BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33811.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473537 jgi|Araly1|473537|fgenesh2_kg.1__3491__AT1G33811.1 1751 0.0
> Ahg473537 jgi|Araly1|473537|fgenesh2_kg.1__3491__AT1G33811.1
Length=1286
Score = 1751 bits (948), Expect = 0.0
Identities = 1055/1107 (95%), Gaps = 5/1107 (0%)
Strand=Plus/Plus
Query 95 GTTTTGT-TTGGTTTTAAAACGACCGTGTCACAGCCACAACAACAGGCACAAGTCCCATG 153
||||||| || | || |||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 65 GTTTTGTATT-G-TTGAAAACGGCTGTGTCACAACCACAACAACAGGCACAAGTCCCATG 122
Query 154 TTTATTCATCTTCGGTGACTCTTTAGTCGACAATGGAAACAACAATAGGTTGCTTTCTCT 213
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 123 TTTATTCATCTTCGGTGACTCCTTAGTCGACAATGGAAACAACAACAGGTTGCTTTCGCT 182
Query 214 TGCGAGGGCTAATTACCGACCTTATGGCATTGACTTTCCCCAAGGTACAACGGGACGGTT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGCGAGGGCTAATTACCGACCTTATGGCATTGACTTTCCCCAAGGTACAACGGGACGGTT 242
Query 274 CACCAACGGTCGCACCTACGTTGATGCACTAGCTCAAATTCTTGGATTTAGGAACT-ATA 332
||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 243 CACCAACGGTCGCACCTACGTTGATGCACTAGCTCAAATTCTTGGATTTCGGG-CTTACA 301
Query 333 TTCCACCATATTCCAGGATTCGTGGCCAGGCTATACTTAGAGGTGCGAATTTCGCATCTG 392
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 TTGCACCATATTCCAGGATTCGTGGCCAGGCTATACTAAGAGGTGCGAATTTCGCATCTG 361
Query 393 GTGCAGCTGGCATTAGAGATGAGACCGGTGACAACTTGGGTGCACATACTTCTATGAACC 452
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 362 GTGCAGCTGGCATTAGAGATGAAACCGGTGACAACTTGGGTGCACATACTTCAATGAACC 421
Query 453 AGCAGGTAGAGCTATACACGACCGCGGTTCAACAGATGCTTCGATACTTCAGAGGAGACA 512
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGCAGGTAGAGCTGTACACGAGCGCGGTTCAACAGATGCTTCGATACTTCAGAGGAGACA 481
Query 513 CAAATGAGCTCCAGAGATACTTAAGCCGTTGTATCTTTTACTCGGGAATGGGAAGTAACG 572
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 482 CAAATGAGCTGCAAAGATACTTAAGCCGTTGTATCTTTTATTCGGGAATGGGAAGTAACG 541
Query 573 ATTATCTCAACAATTACTTCATGCCTGACTTTTACTCAACCAGTACCAATTACAATGACA 632
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 542 ATTATCTCAACAATTACTTCATGCCTGACTTCTACTCAACCAGTACCAATTTCAATGACA 601
Query 633 AAACCTTTGCTGAGTCTCTGATAAAGAACTACACACAACAGCTCACGCGATTGTACCAAT 692
|||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 602 AAACCTTTGCAGAGTCTCTCATAAAGAACTACACGCAACAGCTCACGCGGTTGTACCAAT 661
Query 693 TTGGAGCTCGGAAAGTGATTGTGACTGGAGTGGGACAGATCGGTTGCATACCTTACCAGC 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTGGAGCTCGGAAAGTGATTGTGACTGGAGTGGGACAGATCGGTTGCATACCTTACCAGC 721
Query 753 TCGCCCGCTACAATAATCGTAACAATAGTACTGGCAGATGCAACGAAAAGATTAACAACG 812
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 722 TCGCCCGCTACAATAACCGTAACAATAGTACTGGCAGATGCAACGACAAGATTAACAACG 781
Query 813 CAATTGTGGTGTTTAACACTCAAGTCAAGAAACTAGTGGACCGTTTAAACAAAGGTCAGT 872
||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 782 CAATTGTGGTGTTCAACTCTCAAGTCAAGAAACTAGTGGACCGTTTCAACAAAGGTCAAT 841
Query 873 TGAAGGGAGCAAAGTTTGTTTACCTTGATTCCTACAAGAGTACCTATGATCTCGCCGTCA 932
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 842 TGAAGGGAGCCAAGTTCGTTTATCTTGATTCCTACAAGAGTACCTATGATCTCGCTGTCA 901
Query 933 ATGGAGCCGCTTACGGATTTGAGGTTGTGGACAAAGGTTGTTGTGGGGTGGGGAGGAACA 992
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGGAGCTACTTACGGATTTGAGGTTGTGGACAAAGGTTGTTGTGGGGTGGGGAGGAACA 961
Query 993 ATGGTCAGATAACATGTTTGCCGCTGCAGACCCCGTGCCCTGACCGAACCAAGTATCTCT 1052
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 ATGGTCAGATCACGTGTCTGCCGCTGCAGACCCCGTGCCCTGACCGAACCAAGTATCTCT 1021
Query 1053 TTTGGGACGCGTTTCATCCGACGGAGACTGCTAACATACTGCTGGCGAAATCTAATTTTT 1112
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1022 TTTGGGATGCGTTTCATCCAACGGAGACTGCTAACATATTGCTGGCGAAATCTAATTTTT 1081
Query 1113 ACTCCCGAGCTTACACTTACCCAATCAACATCCAAGAACTAGCCAATCTTTGAAGAAATA 1172
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1082 ACTCCCGAGCTTACACTTACCCCATCAACATTCAAGAACTAGCCAATATTTGAAGAAATA 1141
Query 1173 ATATCTTGATCTCCCATATGAATGCAT 1199
| |||||||||||||||||||||||||
Sbjct 1142 AGATCTTGATCTCCCATATGAATGCAT 1168
Score = 187 bits (101), Expect = 2e-46
Identities = 114/120 (95%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 1237 ATTTCCTATGTGTTAACTTATGTTTCTTTGAAATAACTAATGTTTCTTTGTTTCTGTATT 1296
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 ATTTCCTATGTATTAACTAATGTTTCTTTGAAATAACTAATGTTTCTTTGTTTCTGTATT 1226
Query 1297 GTTCCTCTTACGTAACTCTCAAATATAAGAGAAACATATGACACAAGTGCTCACTTTGAT 1356
|||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1227 GTTCCTCT-ACTTAACTCTCAACTATGAGAGAAACATATGACACAAGTGCTCACTTTGAT 1285
Score = 117 bits (63), Expect = 2e-25
Identities = 74/79 (94%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 4 CTCATTCTTCTTAAAAACCATT-ACA-ATTATTTCACTAAATTATAACTTAATGGGCATT 61
|||||||||||||| | ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1 CTCATTCTTCTTAAGATCCATTAAAACATTATTTCACTAAATTATAACTTAATGGGCATT 60
Query 62 CTCCGTTTTGTATTGTTGA 80
|||||||||||||||||||
Sbjct 61 CTCCGTTTTGTATTGTTGA 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5