BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33820.1
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313906 jgi|Araly1|313906|fgenesh1_pm.C_scaffold_1002686 832 0.0
> Ahg313906 jgi|Araly1|313906|fgenesh1_pm.C_scaffold_1002686
Length=555
Score = 832 bits (450), Expect = 0.0
Identities = 522/556 (94%), Gaps = 8/556 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGCAGAAATTACGAGTGGATCATGATCAAACCATGAACATGATGATTCAACCG 60
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1 ATGATGAAGCAGAAATTACGAGTGGATCATGATCAAACCATGAACACGAAGATACAACCG 60
Query 61 ATTATGTTAAAACAAAGTACAACGACACATGAAAGAGAGATGACTCATATCGAAGACACA 120
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 61 AATATGTTAAAACAAAGTACAACAACACATGAAAGAGAGATGAGTCATATCGAAGACACA 120
Query 121 CAAACCATGAAAATGATGGTGGAGAATGCTTTAAAACAAAGTGCTATGGCACATGAAAGA 180
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CAAACCATGAACATGATGCTGGAGAATGCGTTAAAACAAAGTGCTATGGCACATGAAAGG 180
Query 181 GAGATGAGCCAGCTTAAAGACACACTCCTATTGAAAGACACACAAACCATGAACATGGTG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGATGAGTCAGCTTAAAGACACACTCCTATTGAAAGACACACAAACCATGAACATGGTG 240
Query 241 AAACAAATGATGGAGACTGCATTCAAAGAGAATGCGATGGTACATGAAAGAGACATGTGT 300
||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct 241 AAACAAATGATGGAGACTGCATTAAAACAGAGTGCAATGGTACATGAAAGAGACATGTGT 300
Query 301 CAACTAAAAGACACACTCCAGCTGAAAGACACACAAACCATCAACATGATGACGCAAATG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTAAAAGACACACTCCAACTGAAAGACACACAAACCATCAACATGATGACGCAAATG 360
Query 361 AGTGCAGAAACATATGAACGACAGATGCGTCAAAT-GAAAGACATTATTCAACAGAAAGA 419
| ||| || |||||||||||| ||||||||||| | ||||||||| ||||||||||||||
Sbjct 361 AATGCGGAGACATATGAACGAGAGATGCGTCAA-TCGAAAGACATAATTCAACAGAAAGA 419
Query 420 CAGACTAACCATGGAAATGATGGAAAAAATGATGGAAAATGCATTAAAACAGAGTGAAAT 479
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TAGATTAACCATGGAAATGATGGAAAAAATGATGGAAAATGCATTAAAACAGAGTGAGAT 479
Query 480 AGCACATGAAAGAGGAATGCATCATCAATCCCCCCGAAAGGGTAAG---AC-A--TGTGG 533
|||||||||||||||||||||||||||||||||||||||||| ||| || | ||||
Sbjct 480 AGCACATGAAAGAGGAATGCATCATCAATCCCCCCGAAAGGGAAAGGGTACGACATGTGA 539
Query 534 ATGCAACATTATGTGA 549
||||||||||||||||
Sbjct 540 ATGCAACATTATGTGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20031684225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5