BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33830.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913208 jgi|Araly1|913208|Al_scaffold_0001_3462 1014 0.0
Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687 278 5e-74
> Ahg913208 jgi|Araly1|913208|Al_scaffold_0001_3462
Length=663
Score = 1014 bits (549), Expect = 0.0
Identities = 615/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCAGGAATGCCCCGTTACAAACTTACTTCTCCTAGGTCGTAG-CGAAAATGG 59
||||||||||||||||| ||||||||||||||| ||||| |||||||| | || ||||||
Sbjct 1 ATGGCTGAGCAGGAATGGCCCGTTACAAACTTAATTCTCTTAGGTCGT-GCCGGAAATGG 59
Query 60 AAAAAGCAGCACCGGGAACACCATCATCGGTGAAAAATATTTCGAAGTAAATTTGT-TTG 118
|||||||||||||||||||||||| |||| | |||||||||||||||||||||| | |||
Sbjct 60 AAAAAGCAGCACCGGGAACACCATTATCGATCAAAAATATTTCGAAGTAAATTT-TCTTG 118
Query 119 GAAG-AGATATGGACCAGAGATGTAAGATGTTCAGAGCTTTAATAGAAGATGGCCCAATA 177
| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 119 G-AGAAGATATGGACCAGAGATGTAAGATGTTCAGAGCTGTAATAAAAGATGGCCCAATA 177
Query 178 ATCAATGTGATTGACACTCCTGGTTTGCTCGAGTCATCCGTGTCAGGAGACTATCTCAGT 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 ATCAATGTGATTGACACTCCTGGTTTGCTCGAGTCATCCGTGTCCGGAGACTATCTCAGT 237
Query 238 AAGGAAATAATGAATTGCTTAACTATGGCGGAAGAAGGAATACATGCTGTATTGTTTGTT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 AAGGAAATAATGAATTGCTTAACTATGGCGGAAGAAGGAATACATGCTGTGTTGTTTGTT 297
Query 298 CTGTCTATAACGAATCGAATTTCACAGCGGGAGGAGTTCACATTTAATACATTGCAGCAG 357
||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||
Sbjct 298 CTGTCTATAACGAATCGGATTTCACAGCGGGAGGAGTTTACATTTAACATATTGCAGCAC 357
Query 358 ATATTTGATGATAAAATCCTTGACTATTTCATTGTGGTGTTCACTGGTGGTGATGAGTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ATATTTGATGATAAAATCCTTGACTATTTCATTGTGGTGTTCACTGGTGGTGACGAGTTG 417
Query 418 GAAGCAGACAACCAGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGCAGACAACCAGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACG 477
Query 478 AGAGTTCTCAAACTATGTGGAGGACGAAAGGTCCTGTTTAACAACAAGACAAAGGATAAA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 AGAGTTCTCAAACTATGTGGAGGACGAAAGGTACTGTTTAACAACAAGACAAAGGATAAA 537
Query 538 GGCAAGAGGAATAAGCAACTTAACCAGCTTCT-AGCACATGTCACGGATATAAGACAGCA 596
|||||||||| |||||||||||| ||||| || ||| |||||||||||||| ||| ||||
Sbjct 538 GGCAAGAGGACTAAGCAACTTAAGCAGCT-CTTAGCCCATGTCACGGATATTAGAAAGCA 596
Query 597 AAATGGTGGGATACCGTATACAGAAAATATGCACCGTAAGATCAAG 642
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAATGGTGGGATACCGTATACAGAAAATATGCACCGTAAGATCAAG 642
> Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687
Length=768
Score = 278 bits (150), Expect = 5e-74
Identities = 381/491 (78%), Gaps = 22/491 (4%)
Strand=Plus/Plus
Query 138 ATGTAAGATGTTCAGAGCTTTAATAGAAGATGGCCCAATAATCAATGTGATTGACACTCC 197
|||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 42 ATGTAAGATGTTTAGAGCTGCAATACAAGATGGTCCAATAATCAATGTGATTGACACTCC 101
Query 198 TGGTTTGCTC-GAGTCATCCGTGTCAGG-AGACTATCTCAGTAAGGAAATAATGAATTGC 255
|||| | || || ||||| ||||| | | ||||| | |||| ||| || | ||||||
Sbjct 102 TGGTCT-CTTTGATTCATCAGTGTCTGCTA-ACTATATTAGTAGGGAGATCGTCAATTGC 159
Query 256 TTAACTATGGCGGAAGAAGGAATACATGC-TGTATTGTTTGTTCTGTCTATAACGAATCG 314
||||||||||| |||| |||||| ||||| | | |||| ||| | ||| ||||||
Sbjct 160 TTAACTATGGCAGAAGGAGGAATTCATGCCT-TCCTGTTCGTTTTATCTGCCGGGAATCG 218
Query 315 AATTTCACA-GCGGGAGGAGTTCACATTTAATACATTGCAGCAGATATTT-GAT-GATAA 371
||| |||| | | || ||| |||| || |||| |||||| ||| ||| || | |||
Sbjct 219 GATTACACAAGAAGAAG-AGTCCACACTTGATACCTTGCAGTTGAT-TTTCGACAG-TAA 275
Query 372 AATCCTTGACTAT-TTCATTGTGGTGTTCACTGGTGGTGATGAGTTGGAAGCAGACAACC 430
||| ||||||||| || ||||| ||||||||||| ||||| | | |||||| || | |
Sbjct 276 AATTCTTGACTATATT-ATTGTTGTGTTCACTGGGGGTGACAAACTAGAAGCAAACGAGC 334
Query 431 AGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACGAGAGTTCT-CAAA 489
|| |||||||||||||| ||||||||||| || | ||||| || |||||||| | |
Sbjct 335 TGAAATTGGACGATTATTTTCGTGAAGGTTGTCCAGGGTTTTTAACAAGAGTTCTTCGA- 393
Query 490 CTATGTGGAGGACGAAAGGTCCTGTTTAACAACAAGACAAAGGATAAAGGCAAGAG-GAA 548
|| ||||| || ||||| ||| ||||||| |||| ||| ||||||| || ||||| |
Sbjct 394 CTGTGTGGTGGTCGAAAAGTCTTGTTTAATAACATGACTAAGGATATAGTCAAGAACGC- 452
Query 549 TAAGCAACTTAACCAGCTTCTAGCACATGTC-ACGGATATAAGACAGCAA-AATGGTGGG 606
||||||| | || || ||||| || |||||| | | |||| || || || |||||||||
Sbjct 453 TAAGCAAGTCAAGCAACTTCTGGCCCATGTCGAAGC-TATAGGAAAG-AATAATGGTGGG 510
Query 607 ATACCGTATAC 617
| |||||||||
Sbjct 511 AAACCGTATAC 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5