BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33840.1
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473540 jgi|Araly1|473540|fgenesh2_kg.1__3494__AT1G33840.1 837 0.0
Ahg950666 jgi|Araly1|950666|scaffold_802553.1 58.4 7e-08
Ahg347325 jgi|Araly1|347325|fgenesh1_pg.C_scaffold_5000717 58.4 7e-08
Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063 58.4 7e-08
> Ahg473540 jgi|Araly1|473540|fgenesh2_kg.1__3494__AT1G33840.1
Length=608
Score = 837 bits (453), Expect = 0.0
Identities = 518/549 (94%), Gaps = 6/549 (1%)
Strand=Plus/Plus
Query 76 GTGATAGTGGATCCAAAGTACTGCTC-TCTGCACCCTGTAGATTTGGCGATCGTACGGAA 134
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 63 GTGATAGTAGATCCAAAGTACTGCTCTTC-GCACCCTGTAGATTTGGCGATCGTACGGAA 121
Query 135 GGTGTTGAAGATAACGGACGGTAACTTCGTGATAACGAATGCGGAAGGAAACTTGTTGTT 194
| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 122 GATAATGAAGATAACGGACGGTAACTTCGTGATAAAGAATGGGGAAGGAAACTTGTTGTT 181
Query 195 CAAGGTGAAGGATCCtttttttAGTCTTCACGAGAAGAGGATCTTGATGGATGGTTTTGG 254
||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||| |||
Sbjct 182 CAAGGTGAATGATCCTTTCTTTAGTATTCACGAGAAGAGGATCTTGGTGGATGGTTATGG 241
Query 255 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCTAGTGTT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 242 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCGAGTGTT 301
Query 315 TAGAGGAGGGAGTACGGAGGAG-GTTGATCTGCTATACACGGTGAAAAGATCAAACATGG 373
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 302 TAGAGGAGGGAGTACGGAGGAGAGT-GATCTGCTATACACGGTGAAAAGATCAAACATGA 360
Query 374 TTCAGATAACCACCAAACTTGATGTGTTTTTGGCTGATAACATAGAGCAGAAGAAATGTG 433
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 361 TTCAGCTAACCACCAAACTTGATGTGTTTTTGGCTGACAACATAGAGGAGAAGAAATGTG 420
Query 434 ATTACAGACTCGAAGGGGTTTGGCTCGAGACTTCTTGTTTTGTCTACGCTGGCGATTCTG 493
|||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 421 ATTACAGAGTCGAAGGTGTTTGGCTCGAGAGTTCTTGTTTTGTCTACGCCGGCGATTCTG 480
Query 494 ACATCATTCTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTCTCTTTGGAAAGG 553
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 481 ACATCATTGTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTTTCTTGGGAAAGG 540
Query 554 A-CAATTTCTGCCTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 612
| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCA-TTTCTGCGTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 599
Query 613 GTCATCCTT 621
|| ||||||
Sbjct 600 GTTATCCTT 608
> Ahg950666 jgi|Araly1|950666|scaffold_802553.1
Length=688
Score = 58.4 bits (31), Expect = 7e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693
|||| | || ||||||||||||||||||||||||||||||
Sbjct 510 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 549
> Ahg347325 jgi|Araly1|347325|fgenesh1_pg.C_scaffold_5000717
Length=1290
Score = 58.4 bits (31), Expect = 7e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693
|||| | || ||||||||||||||||||||||||||||||
Sbjct 1042 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 1081
> Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063
Length=1479
Score = 58.4 bits (31), Expect = 7e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693
|||| | || ||||||||||||||||||||||||||||||
Sbjct 1042 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25466108556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5