BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G33840.1 Length=693 Score E Sequences producing significant alignments: (Bits) Value Ahg473540 jgi|Araly1|473540|fgenesh2_kg.1__3494__AT1G33840.1 837 0.0 Ahg950666 jgi|Araly1|950666|scaffold_802553.1 58.4 7e-08 Ahg347325 jgi|Araly1|347325|fgenesh1_pg.C_scaffold_5000717 58.4 7e-08 Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063 58.4 7e-08 > Ahg473540 jgi|Araly1|473540|fgenesh2_kg.1__3494__AT1G33840.1 Length=608 Score = 837 bits (453), Expect = 0.0 Identities = 518/549 (94%), Gaps = 6/549 (1%) Strand=Plus/Plus Query 76 GTGATAGTGGATCCAAAGTACTGCTC-TCTGCACCCTGTAGATTTGGCGATCGTACGGAA 134 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 63 GTGATAGTAGATCCAAAGTACTGCTCTTC-GCACCCTGTAGATTTGGCGATCGTACGGAA 121 Query 135 GGTGTTGAAGATAACGGACGGTAACTTCGTGATAACGAATGCGGAAGGAAACTTGTTGTT 194 | | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 122 GATAATGAAGATAACGGACGGTAACTTCGTGATAAAGAATGGGGAAGGAAACTTGTTGTT 181 Query 195 CAAGGTGAAGGATCCtttttttAGTCTTCACGAGAAGAGGATCTTGATGGATGGTTTTGG 254 ||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||| ||| Sbjct 182 CAAGGTGAATGATCCTTTCTTTAGTATTCACGAGAAGAGGATCTTGGTGGATGGTTATGG 241 Query 255 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCTAGTGTT 314 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 242 AACTAAGGTCTTGACTTTGAAAGGGAAGATAATGACCATGCATGACAGGTGGCGAGTGTT 301 Query 315 TAGAGGAGGGAGTACGGAGGAG-GTTGATCTGCTATACACGGTGAAAAGATCAAACATGG 373 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 302 TAGAGGAGGGAGTACGGAGGAGAGT-GATCTGCTATACACGGTGAAAAGATCAAACATGA 360 Query 374 TTCAGATAACCACCAAACTTGATGTGTTTTTGGCTGATAACATAGAGCAGAAGAAATGTG 433 ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 361 TTCAGCTAACCACCAAACTTGATGTGTTTTTGGCTGACAACATAGAGGAGAAGAAATGTG 420 Query 434 ATTACAGACTCGAAGGGGTTTGGCTCGAGACTTCTTGTTTTGTCTACGCTGGCGATTCTG 493 |||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 421 ATTACAGAGTCGAAGGTGTTTGGCTCGAGAGTTCTTGTTTTGTCTACGCCGGCGATTCTG 480 Query 494 ACATCATTCTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTCTCTTTGGAAAGG 553 |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 481 ACATCATTGTTGCCCAAATGCGCGAGAAGAAAACGATGCAGAGCGTTTTCTTGGGAAAGG 540 Query 554 A-CAATTTCTGCCTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 612 | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATCA-TTTCTGCGTCACTGTTAATCCAAATGTTGATTATGCCTTCATTGCCTCTCTCATT 599 Query 613 GTCATCCTT 621 || |||||| Sbjct 600 GTTATCCTT 608 > Ahg950666 jgi|Araly1|950666|scaffold_802553.1 Length=688 Score = 58.4 bits (31), Expect = 7e-08 Identities = 37/40 (93%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693 |||| | || |||||||||||||||||||||||||||||| Sbjct 510 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 549 > Ahg347325 jgi|Araly1|347325|fgenesh1_pg.C_scaffold_5000717 Length=1290 Score = 58.4 bits (31), Expect = 7e-08 Identities = 37/40 (93%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693 |||| | || |||||||||||||||||||||||||||||| Sbjct 1042 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 1081 > Ahg342300 jgi|Araly1|342300|fgenesh1_pg.C_scaffold_3002063 Length=1479 Score = 58.4 bits (31), Expect = 7e-08 Identities = 37/40 (93%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 654 AAGTTTATGGAAGAGGGACATAACAGATTTCATCTGTTAG 693 |||| | || |||||||||||||||||||||||||||||| Sbjct 1042 AAGTATGTGAAAGAGGGACATAACAGATTTCATCTGTTAG 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25466108556 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5