BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33870.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687 1105 0.0
> Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687
Length=768
Score = 1105 bits (598), Expect = 0.0
Identities = 712/766 (93%), Gaps = 12/766 (2%)
Strand=Plus/Plus
Query 1 ATGTTCACTTCGGAACTACAAGCAGGAGGTGTTACCATGGAATGTGTGATGTATAGAACT 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1 ATGTTCGCTTCGGAACTACAAGCAGGAGGTGTTACCATGGAATGTAAGATGTTTAGAGCT 60
Query 61 GCAATAAAAGATGGTCCGATAATCAATGTGATTGACACTCCCGGTCTCTTTGATTCGTCG 120
|||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 61 GCAATACAAGATGGTCCAATAATCAATGTGATTGACACTCCTGGTCTCTTTGATTCATCA 120
Query 121 GTGTCTGCTAACTATATTACTACGGAGATTC-TCAAATGCTTAACTATGGCAGAAGGAGG 179
||||||||||||||||||| || ||||| || |||| |||||||||||||||||||||||
Sbjct 121 GTGTCTGCTAACTATATTAGTAGGGAGA-TCGTCAATTGCTTAACTATGGCAGAAGGAGG 179
Query 180 AATTCATGCCTTCATGTTTGTTTTATCTGCCGGGAATCGGATTACACAGGAAGAAGAGTC 239
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 AATTCATGCCTTCCTGTTCGTTTTATCTGCCGGGAATCGGATTACACAAGAAGAAGAGTC 239
Query 240 CACACTTGATACCTTGCAGTTGATTTTCGATAGTAAAATTCTTGACTATTTTATTGTCGT 299
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 240 CACACTTGATACCTTGCAGTTGATTTTCGACAGTAAAATTCTTGACTATATTATTGTTGT 299
Query 300 GTTCACTGGGGGTGACAAATTAGAAGCAAACGAGCAGACATTGGACGATTATTTTTC-TG 358
||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||| ||
Sbjct 300 GTTCACTGGGGGTGACAAACTAGAAGCAAACGAGCTGAAATTGGACGATTA-TTTTCGTG 358
Query 359 AAGGTTGTCCCA-AATTTTTAACAGGAGTTCTTAGACTGTGTGGTGGTCGAAAGGTCGTG 417
|||||||| ||| ||||||||| |||||||| ||||||||||||||||||| ||| ||
Sbjct 359 AAGGTTGT-CCAGGGTTTTTAACAAGAGTTCTTCGACTGTGTGGTGGTCGAAAAGTCTTG 417
Query 418 TTTAATAACATGACTAAGGATAAAGTCAAGAACGCTAAGCAAGTCAAGCAACTTTTGGCT 477
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 418 TTTAATAACATGACTAAGGATATAGTCAAGAACGCTAAGCAAGTCAAGCAACTTCTGGCC 477
Query 478 CATGTCGAAGCTATTGAAAAGAATAATGGTGGGAAACCGTATACTAACCAGATGCATCGT 537
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 CATGTCGAAGCTATAGGAAAGAATAATGGTGGGAAACCGTATACTAACCAGATGCATAGC 537
Query 538 ATGATAAAGGAAAAGGGTGATAAGCTTAGGGAACAACAAAGGAAGGTTAAGTCTAAAAAA 597
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 538 ATGATAAAGGAAAAGGGTGATAAGTTTAGGGAACAACAAAGGAAAGTTAAGTCT-AAAAA 596
Query 598 C-TTGCATCAGAAATAGAAGTCATGAAGCAG-GATTTAGAACTGGAGCATGACGAAAAAA 655
| ||||| ||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 597 CTTTGCAGCAGAAATAGAAGTGATGAAGC-GTGATTTAGAATTGGAGCATGACGAAAAAA 655
Query 656 TGAGACGGATGACACAACTTTTGGAGAGGAGGCTTAAGCAGAATTCTGAAGCACATGAAA 715
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 TGAGACGGATGACACAACTTTTGGAGAGGAGGCTTAAACAGAATTCTGAAGCACATGAAA 715
Query 716 GAGCGATGCGTGAGATGAGAGAAGCTATGAGA-AATT-ACAAATAA 759
||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 716 GAGCGATGCGTAAGATGAGAGAAGCTATGAGAGAATTCACAAATAA 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5