BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33880.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473542 jgi|Araly1|473542|fgenesh2_kg.1__3496__AT1G33880.1 837 0.0
> Ahg473542 jgi|Araly1|473542|fgenesh2_kg.1__3496__AT1G33880.1
Length=702
Score = 837 bits (453), Expect = 0.0
Identities = 586/649 (90%), Gaps = 14/649 (2%)
Strand=Plus/Plus
Query 29 CTGATGATAAGAAAAAAGGTACGTCAGTGTCTAAGCCGGTTAAAAACATTGTTCTAGTGG 88
||| |||| |||| | || ||||| ||| ||||||||||||||||||| |||||||| |
Sbjct 47 CTGGTGATCAGAACATGGGAACGTCCGTGCCTAAGCCGGTTAAAAACATAGTTCTAGTAG 106
Query 89 GGCGTTCTGTCAATGGAATATGCACCACTGGGAACAATATCCTCGGTCAAAACAAGTTCG 148
|||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 107 GGCGTTCTATCAATGGAATATGCACCACTGGGAACACCATCCTCGGTCAAAAAAAGTTCA 166
Query 149 GCTCCGAAGGTGCTTTCATGCACTGTCAGATGTATAGTACCACGACACCAGATGGTCAAA 208
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 167 CCTCCGAAGGTGCTTTCATGCACTCTCAGATGTATAGTACCACGACACCAGATGGTCAAA 226
Query 209 TGATCAATGTAATTAAAACTCCTGGTATGTTCGATTTGTCTGTGTCCGAAGACTACATAA 268
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 227 TGATCAATGTGATTAAAACTCCTGGTATGTTCGATTTGTCTGTGTCCGAAGACTTCATAA 286
Query 269 GTAAAGAAATAATCAATTGCTTAACTTTAGCAGAAGAAGGCGT-GCATGCTGTGTTGTTT 327
|||||||||||||||||||||||||||| | ||||||||| | | ||||||||||||||
Sbjct 287 GTAAAGAAATAATCAATTGCTTAACTTTGGTGGAAGAAGGCATAG-ATGCTGTGTTGTTT 345
Query 328 GTTCTATCTATGAA-GAATCGGATCACACAAGAGGAAGAGTATGCACTTAATACCCTACA 386
||||||||| | || |||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 346 GTTCTATCTGT-AAGGAATCGAATCTCACAAGAGGAAGAGTATGCACTTAATACCCTGCA 404
Query 387 ACGTATATTTGGGAGTAAAATCCTTGAATATTTGATATTT-TTGCTCATTGACGGGGAAA 445
|| |||||||||||||||||| |||||||| |||| ||| ||||||| | |||||||||
Sbjct 405 GCGCATATTTGGGAGTAAAATCTTTGAATATATGAT-TTTATTGCTCACTAACGGGGAAA 463
Query 446 AGTTTGAGGCGAAGGAGTTCGAAGATTATTTTCCCGAATGTTGTCCTGAATTTCTTATGA 505
|||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 464 AGTTCGAGGCGTTCGAGTTTGAAGATTATTTTCGGGAATGTTGTCCTGAATTTCTTATGA 523
Query 506 GAGTTCTCAGGTTCTGCAATGGCCGAAAGGTCTTGTTTAATAACATGACTAATGATGAAG 565
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAGTTCTCAGATTCTGCAATGGCCGAAAGGTCTTGTTTAATAACATGACTAATGATGAAG 583
Query 566 GCGTCAAGGCTGAACAAGTCAATCAGGTTATGGCCCATGTTGCAGCAATTAGCAAGAAAA 625
|||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 584 GCGTGAAGGCTGAACAAGTCAATCAGATTATGGCCCATGTCGCAGCAATTAGTAAGAAAA 643
Query 626 ATGATGAAAAACCATATACTGAA-GATATGTATCGTAATATAAAGGTAA 673
| | || || |||||| || |||||||||||| ||||||||||||
Sbjct 644 -T-A--AAT--CCGTATACT-AACGATATGTATCGTCATATAAAGGTAA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5