BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33890.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336460 jgi|Araly1|336460|fgenesh1_pg.C_scaffold_1003025 1393 0.0
> Ahg336460 jgi|Araly1|336460|fgenesh1_pg.C_scaffold_1003025
Length=993
Score = 1393 bits (754), Expect = 0.0
Identities = 888/952 (93%), Gaps = 12/952 (1%)
Strand=Plus/Plus
Query 1 ATGAATCATTCGGAACAGGCTTCAGCGTACAAAGCGGTAAAAAACATAGTTTTGGT-GGG 59
|||||||||| ||||||| |||||||||||||||| || ||||||||||||||||| |||
Sbjct 1 ATGAATCATTGGGAACAGCCTTCAGCGTACAAAGCAGTCAAAAACATAGTTTTGGTCGGG 60
Query 60 ACGTACCGGAAACGGAAAAAGCGCCACTGGAAACTCTCTCATCGGGAAAGACGTGTTCGT 119
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 61 -CGTACCGGAAATGGAAAAAGCGCCACTGGAAACTCCCTCATTGGGAAAGACGTGTTTGT 119
Query 120 CTCAGAAGCGAAAGCAACAGGTGTTACCAAAACATGTCAGACATATAAAGCGGTGACACC 179
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 120 CTCAGAAGCGAAAGCAACAGGTGTTACCCAAACATGTCAGACATATAAAGCGGTAACACC 179
Query 180 AGGTGGCTCGAGGATCAATGTGATTGACACTCCCGGTCTGTTCGATTTATCGGTGTCCGC 239
|| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 180 AGCTGGCTCGAGGATCAACGTGATTGACACTCCCGGTCTATTCGATTTGTCGGTGTCTGC 239
Query 240 TGAATTTATCAGTAAAGAAATCATCAATTGCCTTAGGCTTGCGGAAGGAGGATTACATGT 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TGAATTTATCAGTAAAGAAATCATCAATTGCCTTAGGCTGGCGGAAGGAGGATTACATGT 299
Query 300 TGTTGTGTTAGTTCTATCCGTGAGAACTCGGATAACTCAAGAGGAAGAGAATACACTTAG 359
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 300 TGTAGTGTTAGTTCTATCCGTGAGAACTCGGATTACTCAAGAGGAAGAGAACACACTTAG 359
Query 360 CACCTTGCAGGTCCTTTTCGGGAA-TGAAATCCTTGACTATTTGATCGTTCTATTCACCG 418
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 360 TACCTTGCTGGTCCTTTTC-GGAACTGAAATCCTTGACTATTTGATCGTTCTATTCACGG 418
Query 419 GCGGTGATGAGTTGGAAGCAAACAACCAAACACTGGATGATTATTTTCATCAAGGTTGCC 478
| ||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 419 GAGGTGATGCGTTGGAAGAAAACAATCAAACACTGGACGATTATTTTCATCAAGGTTGCC 478
Query 479 CCTACTTTCTTAAGACAGTTCTTGGTTTATGTGACGATAGAAAGGTCATGTTTAATAATA 538
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 CCGACTTTCTTAAGACAGTTCTTGGTTTATGTGGCGATAGAAAGGTCATGTTTAATAATA 538
Query 539 TGACTAAGGATAAACACAAGAAGGTGGAGCAAGTCCAGCAGTTTCTTGCCCTTGTCGCAA 598
||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 539 TGACTAAGGATAAACGCAAGAAGCTCGAGCAAGTCCAGCAGTTTCTTGCCCTTGTCGCAA 598
Query 599 AGGTTGAAGAGCGCAATGA-AGGAAAACCGTTTAGAGGAAAAATGTACC-TAGAAATAAA 656
|||||||||||| |||||| |||||| ||||||| ||| |||||||||| | ||||||||
Sbjct 599 AGGTTGAAGAGCACAATGATAGGAAA-CCGTTTAAAGGGAAAATGTACCGT-GAAATAAA 656
Query 657 GGAAGAGACTGAATGGCTTAAA-AAGCAGAAGAAGGCAGTTGAAGCTAGTAACCTTGGAG 715
|||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 657 GGAAGAGACTAAATGGCTTAAAGAA-CAGAAGAAGGCAGTGGAAGCTAGGAACCTTGGAG 715
Query 716 AAGCAGAGTTAGCAAAAATGAAGAAGGAGCTACAAATGGAACATGACACGAGGATGAGCC 775
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 716 AAGCAGAGTTAGCGAAAATGAAGAAGGAGATACAAATGGAATATGACACGAGGATGAGCC 775
Query 776 AAATGGAAGATATGGTGAAAAATATGCTAAAAGAGACTTCTGCTGCGCACGAAAGAATGG 835
|||||||||| |||||||| |||| |||||||||||||||||||||||| || |||||||
Sbjct 776 AAATGGAAGAGATGGTGAAGAATACGCTAAAAGAGACTTCTGCTGCGCATGAGAGAATGG 835
Query 836 TTTCTATGCTAAATGAGAATCTCGAGAACGCACATAGAGAAAACATAGATCTGCGCAAAG 895
||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 836 TTTTTATGCTAAATGAGAATCTCGAGAAGGCACAAAGACAAAACATAGATCTGCGCAAAG 895
Query 896 CA-CATGATCATGAGCAAAAGAAGCGGATGATGATTCAGCTTGGTTTGGGAG 946
| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 896 -AGCATGATCATGAGCAAAAGAAGCGGATGCTGATTCAGCTTGGTTTTGGAG 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5