BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33910.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913215 jgi|Araly1|913215|Al_scaffold_0001_3469 1437 0.0
Ahg336456 jgi|Araly1|336456|fgenesh1_pg.C_scaffold_1003021 209 2e-53
Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687 152 4e-36
> Ahg913215 jgi|Araly1|913215|Al_scaffold_0001_3469
Length=909
Score = 1437 bits (778), Expect = 0.0
Identities = 867/910 (95%), Gaps = 5/910 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGATCGGGCACAACCGTCAGCGTCAGAGCCAGTGAGAAACATAGTTCTTGTGGGG 60
||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1 ATGAGTGATCGGGAACAACCTTCAGCGTCCGAGCCAGTGAGAAACATAGTTCTTGTAGGG 60
Query 61 CCTACCGGAAACGGGAAAAGCTCCACCGGGAACTCTCTCATCGGAAAAGAAGTGTTCATC 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 61 CCTACCGGAAACGGGAAAAGCTCCACCGGGAACTCGCTCATCGGAAAAGAAGTGTTCACC 120
Query 121 TTGGAAACCGTGGAATGTAAGACATGTAAAGCTAAGACACTAGATGGCCAGATAATCAAT 180
| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 121 TCGGAAACCGTGGAATGTAAGACATGTAAAGCTAAAACACTAGATGGCCTGAAAATCAAT 180
Query 181 GTGATTGACACTCCTGGTCTCTTCGATTTGTCCGTGTCTACGGATTATATGAACAAGGAG 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGATTGACACTCCTGGTCTCTTTGATTTGTCCGTGTCTACGGATTATATGAACAAGGAG 240
Query 241 ATCATCAATTGCCTTACCCTCACGGATGGAGGGTTACATGCTGTGGTGTTAGTACTATCT 300
|||| |||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 241 ATCAGCAATTGCCTTACGCTCACGGAAGGAGGATTACATGCTGTGGTGTTAGTGCTATCT 300
Query 301 GTGGGGACTGACATTTTAAAAGAGGAAGAGGCCGCACTTAACA-AGTTACAGCTCCTTTT 359
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 301 GTGGGGACTGACATTTTAAAAGAGGAAGAGTCCGCACTTAACACA-TTACAGCTCCTTTT 359
Query 360 TGGCAGTAAAATTGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAA 419
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGAAGTAAAATCGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAT 419
Query 420 GGAAAACAAGACACTTGACGACTATTTGTCCAGAGGCTGCCCTGAATTTTTGAAGACAGT 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGAAAACAAGACACTTGACGACTATTTGTCTAGAGGCTGCCCTGAATTTTTGAAGACAGT 479
Query 480 TCTTAGATTGTGTGGCGGAAGAAGGGTTTTGTTTAATAACAAGACTACGGATGAAGTCAA 539
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 480 TCTTAGATTGTGTGGTGGAAGAAGGGTCTTGTTTAATAACAAGACTATGGATGAAGTAAA 539
Query 540 GAAGATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTGAAAATCTCAACGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GAAGATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTGAAAAGCTCAACGG 599
Query 600 TGGGAAAGCGTTGTTTACTGAAGAAAATGATCTAAATGAAAAGAGACAAGGTGAGATGCT 659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 TGGGAAAGCGTTGTTTACTGAAGAAAATGATCTAAATGTAAAGAGACAAGGTGAGATGCT 659
Query 660 TATGGAACAGGAAATGGAGGTACAATCTAAGAAGCCTGAGAACACAGAGGTAGAAGAGAT 719
|||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 660 TATGGAACAGCAAAAGGAGGTGCAATCTAAGAAGCCTGAGAAAACAGAGGTAGAAGAGTT 719
Query 720 GAAGAAGCAGTTAGAAATATCGTATGGCCAACAAATGAACATGATGGCACAGATGGTGGA 779
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GAAGAAGCAGTTAGAAATAACGTATGGCCAACAAATGAGCATGATGGCACAGATGGTGGA 779
Query 780 GGACACGCTAAAGGAGTCATCGGCGTCACATGAGAGAATGTTACTAGCACTGAAAGATAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 780 GGACACGCTAAAGGAGTCATCGGCGTCACATGAGAGAATGTTACTAGCACTGAGAGAGAA 839
Query 840 AGTTGAGAGATCATACTTAGAAAATGAAGACATGCATAATGAGACCAAAAGA-T--GTAA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 840 AGTTGAGAGATCATACTTAGAAAATGAAGACATGCATAATGAGACCAAAAGAGTATGTAA 899
Query 897 CATCCTGTGA 906
||||||||||
Sbjct 900 CATCCTGTGA 909
> Ahg336456 jgi|Araly1|336456|fgenesh1_pg.C_scaffold_1003021
Length=975
Score = 209 bits (113), Expect = 2e-53
Identities = 301/392 (77%), Gaps = 12/392 (3%)
Strand=Plus/Plus
Query 134 AATGTAAGACATGTAAAGCTAAGACACTAGATGGCCAGATAATCAATGTGATTGACACTC 193
|||||||||||| || |||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 173 AATGTAAGACATTTAGAGCTGTGACACCGGATGGCCCGATAATCAATGTGATTGACACTC 232
Query 194 CTGGTCTCTTCGATTTGTCCGTGTCTACGGA-TTATATGAACAAGGAGATCATCAATTGC 252
||||||||||||| || ||||||| | || || ||| | ||||| ||| |||| |||
Sbjct 233 CTGGTCTCTTCGACCTGGCCGTGTCCGCAGAGTT-TATTAGTAAGGAAATCGTCAACTGC 291
Query 253 CTTACCCTCACG-GATGGAGGGTTACATGCTGTGGTGTTAGTACTATCTGTGGGGACT-G 310
|||| || | || | |||| ||||||| || |||||||| ||||| || |||| |
Sbjct 292 CTTATTCTTGCTAGA-GAAGGGCTACATGCCGTCGTGTTAGTTCTATCCATGTCGACTCG 350
Query 311 ACATTTTAAAAGAGGAAGAGGCCGCACTTAACAAGTTACAGCTCCTTTTTGGCAG-TAAA 369
|||| | |||||||||| |||||| | |||||| | || || || | | |
Sbjct 351 G-ATTTCACAAGAGGAAGAAAATGCACTTTGTACGTTACAAATGCTGTTCGGG-GCTTCA 408
Query 370 ATTGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAAG-GAAAACAA 428
|| |||||||||||| ||||| | |||||| | |||||| | |||||| || | || |
Sbjct 409 ATCGTTGACTATTTGATCGTTGTATTCACTTGCGGTGATATGTTGGAAGAGCGGAAT-AT 467
Query 429 GACACTTGACGACTATTTGTCCAGA-GGCTGCCCTGAATTTTTGAAGACAGTTCTTAGAT 487
|||||| || || |||||||||| | || |||||||||||| | |||| |||||| |||
Sbjct 468 GACACTAGAGGATTATTTGTCCA-ATGGTTGCCCTGAATTTCTAAAGAAAGTTCTCAGAC 526
Query 488 TGTGTGGCGGAAGAAGGGTTTTGTTTAATAAC 519
| ||||| || ||||||||| | ||| |||||
Sbjct 527 TATGTGGAGGCAGAAGGGTTGTATTTGATAAC 558
> Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687
Length=768
Score = 152 bits (82), Expect = 4e-36
Identities = 368/502 (73%), Gaps = 36/502 (7%)
Strand=Plus/Plus
Query 127 ACCGTGGAATGTAAGACATGTAAAGCT--AAGACACTAGATGG-CCAGATAATCAATGTG 183
||| |||||||||||| | || |||| || ||| |||||| ||| ||||||||||||
Sbjct 34 ACCATGGAATGTAAGATGTTTAGAGCTGCAATACA--AGATGGTCCA-ATAATCAATGTG 90
Query 184 ATTGACACTCCTGGTCTCTTCGATTTGTCCGTGTCTACGGATTATATGAACAAGGAGATC 243
|||||||||||||||||||| |||| || |||||| | | ||||| | | |||||||
Sbjct 91 ATTGACACTCCTGGTCTCTTTGATTCATCAGTGTCTGCTAACTATATTAGTAGGGAGATC 150
Query 244 ATCAATTGCCTTACCC-TCACGGATGGAGGG-TTACATGC-TGTGGTGTTAGTACTATCT 300
|||||||| ||| | | | || ||||| || ||||| | | |||| || |||||
Sbjct 151 GTCAATTGC-TTAACTATGGCAGAAGGAGGAATT-CATGCCT-TCCTGTTCGTTTTATCT 207
Query 301 GTGGGGACT-GACATTTTAAAAGAGGAAGAGGCCGCACTTAACAAGTTACAGCTCCTTTT 359
| |||| | | ||| | |||| |||||| || ||||| | | || ||| | ||||
Sbjct 208 GCCGGGAATCGG-ATTACACAAGAAGAAGAGTCCACACTTGATACCTTGCAGTTGATTTT 266
Query 360 TGGCAGTAAAATTGTTGACTAT-TTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAA 418
| |||||||||| |||||||| || | ||| | |||||||| ||||| | |||
Sbjct 267 CGACAGTAAAATTCTTGACTATATTATT-GTTGTGTTCACTGGGGGTGACAAACTAGAA- 324
Query 419 AGGAAAACAAG---ACACTTG-ACGACTATTTGTCCAGA-GGCTGCCCTGAATTTTTGAA 473
| ||| | || | | ||| |||| ||||| || || || || || | ||||| ||
Sbjct 325 -GCAAA-CGAGCTGAAA-TTGGACGATTATTT-TCGTGAAGGTTGTCCAGGGTTTTT-AA 379
Query 474 GAC-AGTTCTTAGATTGTGTGGCGGAAGAAGGGTTTTGTTTAATAACAAGACTACGGATG 532
| ||||||| || ||||||| || ||| || ||||||||||||| ||||| ||||
Sbjct 380 CAAGAGTTCTTCGACTGTGTGGTGGTCGAAAAGTCTTGTTTAATAACATGACTAAGGAT- 438
Query 533 A-AGTCAAGAA-GATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTG-AAA 589
| ||||||||| | | ||||||| || || || || |||||||||||||| || | |||
Sbjct 439 ATAGTCAAGAACGCTA-AGCAAGTCAAGCAACTTCTGGCCCATGTCGAAGCTATAGGAAA 497
Query 590 -ATCTCAACGGTGGGAAAGCGT 610
| | || ||||||||| |||
Sbjct 498 GAA-T-AATGGTGGGAAACCGT 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5