BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33920.1
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913214 jgi|Araly1|913214|Al_scaffold_0001_3468 715 0.0
> Ahg913214 jgi|Araly1|913214|Al_scaffold_0001_3468
Length=498
Score = 715 bits (387), Expect = 0.0
Identities = 462/499 (93%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 1 ATGCAAT-ATACACTGATAATTTATGGACAGAAACACATGATCTACGCAAGGGATCTTAG 59
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGC-ATCATACAATGATAATTTATGGACAGAAACACATGATCTACGCAAGGGATCTTAG 59
Query 60 CATTGCATGGTCGGACAAAGACGAGTATTGGTCATGGCTGCCTCTCCGGTATGATATATC 119
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 60 CATAGCATGGTCGGACAACGAAGAGTATTGGTCATGGCTTCCTCTCCGGTATGATATATC 119
Query 120 AAGCGAAAAACTCGTTGATGCTGCTGTGCTAGAAGCAGTTTGTTGGCTAGATGTAAATGG 179
|||| || ||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 120 AAGCCAAGAACTCACTGATGCTGCTGTGCTAGAAGCAGTTTGTTGGTTAGATGTGAATGG 179
Query 180 AAAATTTGACACGAGAGAACTGACACTAGAGACAACCTATGAGGTTGTGTATGTCGTGAA 239
||| || ||||||||||||||||||| || |||||| ||||||||||||||||| |||||
Sbjct 180 AAAGTTCGACACGAGAGAACTGACACCAGCGACAACGTATGAGGTTGTGTATGTGGTGAA 239
Query 240 GTTAGAAGATACAGCTTCTGGATGGAACATACCAGTGAATCTGAAGTTGACCTTGCCCGA 299
||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 240 GTTAGAAGATACAGCTTATGGATGGAAAATACCAGTGAATCTGAAGTTAACCTTGCCCGA 299
Query 300 CGGTAAGAAAAGGCCACAAGAGCGAAGCATGTGCTTGAAAGAGCATATAGGGAAACGGTG 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TAGTAAGAAAAGGCCACAAGAGCGAAGCGTGTGCTTGAAAGAGCATATAGGGAAACGGTG 359
Query 360 GATAGATATATCAGCCGGTGAGTTCGTGACATCACCAGATAATGCTGGAGAGATCAGTTT 419
| ||||||||||||| |||||||| || || |||| |||||||| ||||||||||||||
Sbjct 360 GGTAGATATATCAGCTGGTGAGTTTGTAACGTCACTGGATAATGCAGGAGAGATCAGTTT 419
Query 420 CTCCATGTATGAGACCAAATCTTGCTGTTGGAAGAGAGGGCTCTTTGTCAAATGTGTCGA 479
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||
Sbjct 420 CTCCATGTATGAGACCAAATCTGGCTGTTGGAAGAGAGGGCTCTTTGTTAAAGGTGTTGA 479
Query 480 AATTCGTCCGAAAAACTAA 498
|||||||||||||||||||
Sbjct 480 AATTCGTCCGAAAAACTAA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18085749186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5