BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33930.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336456 jgi|Araly1|336456|fgenesh1_pg.C_scaffold_1003021 1400 0.0
Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687 135 5e-31
> Ahg336456 jgi|Araly1|336456|fgenesh1_pg.C_scaffold_1003021
Length=975
Score = 1400 bits (758), Expect = 0.0
Identities = 892/955 (93%), Gaps = 15/955 (2%)
Strand=Plus/Plus
Query 69 TGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTCAAAAACGTAGTTCTGGTAGGCCG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 TGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTCAAAAACGTAGTTCTGGTAGGCCG 83
Query 129 TACTGGGAATGGAAAAAGCGCCACTGGAAATTCCATCATCGGAAGAAAGGTTTTCGAGTC 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TACTGGGAATGGAAAAAGCGCCACTGGAAATTCCATCATCGGAAGAAAGGTTTTCGAGTC 143
Query 189 AAAATATCAAGCTGTTGGTGTTACCACAAGATGTAAGACATTTAGAGCTGTGACACCGGA 248
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 144 AAAATATCAAGCTGTTGGTGTTACCACAAAATGTAAGACATTTAGAGCTGTGACACCGGA 203
Query 249 TGGCCCCATAATCAATGTGATTGACACTCCTGGTCTCTTCGACCTGGCCGTGTCCGCTGA 308
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 204 TGGCCCGATAATCAATGTGATTGACACTCCTGGTCTCTTCGACCTGGCCGTGTCCGCAGA 263
Query 309 GTTTATTAGTAAGGAAATCGTCAACTGCCTTATTCTTGCTAGAGAAGGGCTACATGCTGT 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 264 GTTTATTAGTAAGGAAATCGTCAACTGCCTTATTCTTGCTAGAGAAGGGCTACATGCCGT 323
Query 369 GGTGTTAGTTCTATCCTTGTCGACTCGGATTTCACAAGAGGAAGAAAACGCACTTTGTAC 428
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 324 CGTGTTAGTTCTATCCATGTCGACTCGGATTTCACAAGAGGAAGAAAATGCACTTTGTAC 383
Query 429 GTTACAGATGTTGTTCGGGGGTAAAATCGTTGACTATTTGATCGTTGTATTCACTTGTGG 488
|||||| ||| ||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 384 GTTACAAATGCTGTTCGGGGCTTCAATCGTTGACTATTTGATCGTTGTATTCACTTGCGG 443
Query 489 TGATATGTTGGAAGATCGAAATATGACTTTAGAAGATTATTTGTCCAATGGTTGCCCTGA 548
||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||
Sbjct 444 TGATATGTTGGAAGAGCGGAATATGACACTAGAGGATTATTTGTCCAATGGTTGCCCTGA 503
Query 549 ATTTCTAAAGAATGTTCTCAGACTATGTGGAGGCAGAAGGGTTGTATTTGATAACCGAAC 608
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ATTTCTAAAGAAAGTTCTCAGACTATGTGGAGGCAGAAGGGTTGTATTTGATAACCGAAC 563
Query 609 GAAAGATGAAG-GTGTGAAGGCTAAGCAAGTCCA-GCAGCTTCTGGTCCATGTCGCAGCG 666
| ||||||||| | |||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 564 GGAAGATGAAGAG-GTGAAGGCTAAGCAAGTCCATG-AGCTTCTCGTCCATGTCGCAGCG 621
Query 667 ATTGAAAAG-GAAACTGGTGGGAATCCCTTTACGGACACGATGCACCGTAGGATACAGGA 725
|| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 622 ATCGAAA-GTGAAACTGGTGGGAATCCATTTACGGACACGATGCACCGTAGGATACAGGA 680
Query 726 AGAGGCTGCAAGGGTTAAAAGGGAAGAGAAGGAAATTGAAGaaaaaaaCATTGCAGACGA 785
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 681 AGAGGCTGAAAGGGTTAAAAGGGAAGAGAAGGAAATTGAAGAAAAAAACATTGCAGAGGA 740
Query 786 AGAGAAAGCAGCGTTGAAGAAGCAGTTAGACATGTCGTATAGCCAAAACATGAACATGAT 845
|||||||||| ||||||||| ||| | |||| ||||||||||||||| |||||||||||
Sbjct 741 AGAGAAAGCAAAGTTGAAGAAACAGCTCGACAAGTCGTATAGCCAAAATATGAACATGAT 800
Query 846 GGCATTGATGATGGAGAGGATATTTAAAGAAACAGCAGCGGCGAATGAGAGACAAATGAA 905
|||| ||||||||||||||||||||||||| | || ||||| |||||||||||||||||
Sbjct 801 GGCACAGATGATGGAGAGGATATTTAAAGAATCTGCGGCGGCAAATGAGAGACAAATGAA 860
Query 906 TATGATGAAAGACTTTATGGAAATTTCAATAATAGGAAATGATGCTCATCGTAAAAGAGC 965
||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 861 TATGATGAAGGACTTTATGGAAATTTCAATTATCGGAAAGGATGCTCAGCGTAAAAGAGA 920
Query 966 TGAAGAGAAGCAGG--CAG-AGA-AG--A--AA-CAAGAATGCAACATCCTGTGA 1011
||||||||||| || ||| || || | || || |||||||||||| |||||
Sbjct 921 TGAAGAGAAGCGGGAGCAGCAGGCAGCGAGGAAGCAGGAATGCAACATCTTGTGA 975
Score = 126 bits (68), Expect = 3e-28
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGATCAGAACACAACTGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAAGATCAGAACACAACTGACCGTTGGGAGTTGCCTTCAGCGTCAGAGCCCGTC 60
Query 61 AAAAACGT 68
||||||||
Sbjct 61 AAAAACGT 68
> Ahg313907 jgi|Araly1|313907|fgenesh1_pm.C_scaffold_1002687
Length=768
Score = 135 bits (73), Expect = 5e-31
Identities = 401/552 (73%), Gaps = 52/552 (9%)
Strand=Plus/Plus
Query 205 GGTGTTACCACAAG-ATGTAAGACATTTAGAGCTGTGACACCGGATGGCCCCATAATCAA 263
|||||||||| | |||||||| |||||||||| | || ||||| || ||||||||
Sbjct 28 GGTGTTACCA-TGGAATGTAAGATGTTTAGAGCTGCAATACAAGATGGTCCAATAATCAA 86
Query 264 TGTGATTGACACTCCTGGTCTCTTCGACCTGGCC-GTGTCCGCTGAGTTTATTAGTAAGG 322
|||||||||||||||||||||||| || | | ||||| ||| | | |||||||| ||
Sbjct 87 TGTGATTGACACTCCTGGTCTCTTTGAT-TCATCAGTGTCTGCTAACTATATTAGTAGGG 145
Query 323 AAATCGTCAACTGCCTTATTCT-TG-CTAGA-GAAGGGCTACATGC-TGTGGTGTTAGTT 378
| |||||||| ||| ||| || || | ||| | ||| | ||||| | | |||| |||
Sbjct 146 AGATCGTCAATTGC-TTAA-CTATGGC-AGAAGGAGGAATTCATGCCT-TCCTGTTCGTT 201
Query 379 CTATCCTTGTCG--ACTCGGATTTCACAAGAGGAAGAAAACGCACTTTG-TACGTTACAG 435
|||| | | || | ||||||| ||||||| ||||| | ||||| | ||| || |||
Sbjct 202 TTATC-T-GCCGGGAATCGGATTACACAAGAAGAAGAGTCCACACTT-GATACCTTGCAG 258
Query 436 ATG-TTGTTCGGGGGTAAAAT-CGTTGACTAT-TTGATCGTTGTATTCACTTGTGGTGAT 492
|| || |||| ||||||| | |||||||| || || ||||| |||||| | |||||
Sbjct 259 TTGATT-TTCGACAGTAAAATTC-TTGACTATATT-ATTGTTGTGTTCACTGGGGGTGAC 315
Query 493 ATGTTGGAAG-AT-CGAAATATGACTTTAGAAGATTATTT--GTCCAATGGTTGCCCTGA 548
| | |||| | ||| | || || || |||||||| || || ||||| || |
Sbjct 316 AAACTAGAAGCAAACGAGCT--GAAATTGGACGATTATTTTCGTG-AA-GGTTGTCCAGG 371
Query 549 ATTTCTAA-A-GAATGTTCT-CAGACTATGTGGAGG-C-AGAAGGGTTGTATTTGATAAC 603
||| ||| | || ||||| | |||| ||||| || | | ||| |||| || |||||
Sbjct 372 GTTTTTAACAAGA--GTTCTTC-GACTGTGTGGTGGTCGAAAAGTCTTGT-TTA-ATAAC 426
Query 604 C-GAACGAAAGATGA-AGGTGT-GAAGGCTAAGCAAGTCCAGCAGCTTCTGGTCCATGTC 660
|| | || ||| | || | ||| |||||||||||| |||| ||||||| |||||||
Sbjct 427 ATGA-CTAAGGAT-ATAG-TCAAGAACGCTAAGCAAGTCAAGCAACTTCTGGCCCATGTC 483
Query 661 GCAGCGATTGAAAAGGA-AACTGGTGGGAATCCCTTTACGGAC-ACGATGCACCGTAGGA 718
| ||| || | |||| | || ||||||||| || | ||| || | |||||| | | ||
Sbjct 484 GAAGCTATAGGAAAGAATAA-TGGTGGGAAACCGTATACTAACCA-GATGCATAGCATGA 541
Query 719 TACAGGAAGAGG 730
|| ||||| |||
Sbjct 542 TAAAGGAAAAGG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5