BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33970.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473550 jgi|Araly1|473550|fgenesh2_kg.1__3504__AT1G33970.4 1554 0.0
> Ahg473550 jgi|Araly1|473550|fgenesh2_kg.1__3504__AT1G33970.4
Length=1185
Score = 1554 bits (841), Expect = 0.0
Identities = 1001/1079 (93%), Gaps = 8/1079 (1%)
Strand=Plus/Plus
Query 63 ATAAGGGTATATGAGTTTGTTGGACATGGGTGGAGATATGATGGAAGATGATTGGGAATT 122
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 38 ATAAGGGTATATGAGTTTGTTGAAGATGGGTGGCGATATGATGGAAGATGATTGGGAATT 97
Query 123 TGCGTCATCATCAAACCCTAAAAGAACCCTAGTTCTTGTGGGCCGTACTGGAAACGGAAA 182
||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 98 TGCTTCATCGTCAAACCCTAAACGAACCCTAGTTCTTGTGGGCCGTACTGGTAACGGAAA 157
Query 183 GAGTGCGACAGGTAACAGTATCCTTGGGAGGAAAGCTTTTAGGTCAAGAGCTAGAACTGT 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GAGTGCGACAGGGAACAGTATCCTTGGGAGGAAAGCTTTTAGGTCAAGAGCTAGAACTGT 217
Query 243 AGGAGTGACAAGCACGTGCGAGTCACAGAGAGTTGTTCAAGAAGATGGTGATATCATTAA 302
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGGAGTGACGAGCACGTGCGAGTCACAGAGAGTTGTTCAAGAAGATGGTGATATCATTAA 277
Query 303 TGTTGTTGATACTCCTGGTTTGTTTGATTTGTCTACTGCAGCTGATTTTATTGGTAAAGA 362
||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 278 TGTGGTTGATACTCCTGGTTTGTTTGATTTGTCCACTGCAGCCGATTTTATCGGTAAAGA 337
Query 363 GATTGTGAGGTGTATAAGTTTGGCAGAAGATGGGATTCATGCGATCTTGTTGGTATTCTC 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AATTGTGAGGTGTATAAGTTTGGCAGAAGATGGGATTCATGCGATCTTGTTGGTATTCTC 397
Query 423 TGTGAGGCGGCTTGCTGAAGAGGAGCAAACTGTGCTTAGTTTCTTGCAAGCGCTATTCGG 482
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 398 TGTGAGGCGGCTTGCTGAAGAGGAGCAAACTATTCTTAGTTTCTTGCAAGCACTATTCGG 457
Query 483 CAGTAAGATCGCTGACTATATGATCGTTGTTTTTACCGGTGGCGATGAGTTGGAAGAGAA 542
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 458 CAGTAAAATCGCTGATTATATGATCGTTGTTTTTACCGGTGGGGATGAGTTGGAAGAGAA 517
Query 543 TGAGGAGACATTGGAGGAGTATTTGGCTGACTATTGCCCTGAGTTTCTTAAAGAAATTCT 602
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 518 TGAGGAGACATTGGAGGAGTATTTGGCTGACTTTTGCCCTGAGTTTCTGAAAGAAATTCT 577
Query 603 TGGGATATGTGACAATCGGTTGGTGTTGTTTAATAACAAGACTACTGATAAGGTGAAGAA 662
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 578 TGGGATATGTGACAATCGGGTGGTCTTGTTTAATAACAAGACTACTGATAAGGTGAAGAA 637
Query 663 AGCTGAGCAAGTTCAGAAGCTTCTCTCACTTGTTGAATCTGTTGTTAAACAGAA-CAATG 721
|||||||||||||||||||||||||| ||||||||||| |||| |||| ||| ||| |
Sbjct 638 AGCTGAGCAAGTTCAGAAGCTTCTCTTGCTTGTTGAATCCATTGTCAAAC-GAAACAACG 696
Query 722 GAAAACCGTATTCAGATGAGTTGTTCCATGAGCTACAGGAAGAGGCTATCAAGCTAAGGG 781
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 697 GAAAACCGTATACAGATGAGTTGTTCCATGAGCTACAGGAAGAGGCTATTAAGCTAAGGG 756
Query 782 ACCAGAAAAAGGAGGTTGA-GTTACTTCAGGGTTACTCTAATAATGAGATAGATGAGTTC 840
|||||||||||||||||| | || |||||||||| |||| ||||||| |||||||
Sbjct 757 GCCAGAAAAAGGAGGTTGAAGCG-CTGAAGGGTTACTCAAATATTGAGATATCTGAGTTC 815
Query 841 AAGAAGCAAATCGATATGTCCTATGATAGGCAGCTTAGCCGCATCACCGAGATGGTGGAG 900
|||||||| || |||||||||||||| |||| |||||||||||||| |||||||| |||
Sbjct 816 AAGAAGCAGATTGATATGTCCTATGACCGGCAACTTAGCCGCATCACAGAGATGGTTGAG 875
Query 901 ACTAAGCTGAGAGACACTGCTAAGAGACTAGAGCAGCAACTAGGTGAAGAGCAAGCTGCA 960
|||||||||||||| || || ||||| || ||||||||||| |||||||||||||| |||
Sbjct 876 ACTAAGCTGAGAGAAACAGCCAAGAGGCTGGAGCAGCAACTGGGTGAAGAGCAAGCCGCA 935
Query 961 AGACTTGAAGCGGAGAAGAGGGCAAACGAAGTTCAGAAGCGGTCGAGCGATGAGATTAAG 1020
||| |||||||||| |||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 936 AGAATTGAAGCGGAAAAGAAGGTAAACGAAGTTCAGAAACGGTCGAGCGATGAGATTAAG 995
Query 1021 AAGCTCAGAGAGAATCTGGAGAGGGCGGAAAAAGAGACGAAGGAACTTCAGAAAAAACTG 1080
|||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 996 AAGCTCAGGGAGAATCTGGAGAGGGCTGAAAAAGAGACAAAGGAGCTCCAGAAAAAACTG 1055
Query 1081 GGAAAGTGCATCAATCTATGATATGTTGAGATGTTGTAGCTCCAGTGAAATCTGATAAG 1139
||||||||||||||||| |||| | ||||| | | |||| |||||||||||||||||
Sbjct 1056 GGAAAGTGCATCAATCTGTGAT--GCTGAGAC-T-GAAGCTTCAGTGAAATCTGATAAG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5