BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33980.2
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473553 jgi|Araly1|473553|fgenesh2_kg.1__3507__AT1G33980.1 2913 0.0
> Ahg473553 jgi|Araly1|473553|fgenesh2_kg.1__3507__AT1G33980.1
Length=2062
Score = 2913 bits (1577), Expect = 0.0
Identities = 1949/2117 (92%), Gaps = 71/2117 (3%)
Strand=Plus/Plus
Query 1 GGGAAGAGAGGAAACAAAAATTAGGGCAAAATTAGCGTATTGATGTGTTTCACTTttctt 60
||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 GGGGAGAGAGGAAACAAAAATTAGGGCAAAATT-GCGTCTTGATGTGTTTCA-------- 51
Query 61 cttcttcttcttcATCGTGTTCGTGTTTGATTTGCGACTTTCTCCAAGGAAAATTTAGGG 120
||| ||| | || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 52 ---CTT-TTC-T--TC---TTCGTGTTTGATTTGCGACTTTCTCTAAGGAAAATTTAGGG 101
Query 121 TTTTCGATGAAGGAACCTTTGCAGAAGAAGAAGGTGGTTGTTCGTCACTTGCCGCCTTCT 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TTTTTGATGAAGGAACCTTTGCAGAAGAAGAAGGTGGTTGTTCGTCACTTGCCGCCTTCT 161
Query 181 CTTTCACAGTCCGATCTCTTATCTCAAATTGATCCTCGTTTCGCTGATCGTTACAATTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 162 CTTTCACAGTCCGATCTCTTATCTCAAATTGATCCTCGTTTCGCTGATCGTTATAATTGG 221
Query 241 GTTTCGTTTCGTCCTGGGAAGTCCAGGTTAGGCTATAAAAATCAGAAGTATTCACGGGCC 300
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 222 GTTTCGTTTCGTCCTGGGAAGTCC-----A-GCTATAAAAATCAGAAGTATTCACGGGCC 275
Query 301 TATGTAAGTTTCAAGGCACCAGAAGATGTTTATGAGTTCGCTGCATTTTTCAACGGGCAT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TACGTAAGTTTCAAGGCACCAGAAGATGTTTATGAGTTCGCTGCATTTTTCAACGGGCAT 335
Query 361 GTGTTTGTTAATGAAAAGGGTGCTCAGTTTAAGGCTATAGTTGAATATGCACCTTCTCAG 420
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 336 GTGTTTGTTAATGAAAAGGGTGCTCAGTTTAAGGCTGTAGTTGAATATGCGCCTTCTCAG 395
Query 421 CGTGTTCCGAAACCGAGTGATAAGAAAGATCCTCGTGAAGGGTCTATTAGTAAAGATCCT 480
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGTGTGCCGAAACCGTGTGATAAGAAAGATCCTCGTGAAGGGTCTATTAGTAAAGATCCT 455
Query 481 GATTATCTTGAGTTTCTTAAGGTGATTGCACAACCTGTTGAGAATCTTCCTAGTGCTGAA 540
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 456 GATTATCTGGAGTTCCTTAAGGTGATTGCTCAACCTGTTGAGAATCTTCCTAGTGCTGAA 515
Query 541 ATCCAGTTGGAAAGAAGAGAAGCTGAGCAGTCTGGTGCTTCAAAAGCGGCTCCCATTGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 ATCCAGTTGGAAAGAAGAGAAGCTGAGCAGTCTGGTGCTTCAAAAGCGGCTCCCATTGTT 575
Query 601 ACACCTCTTATGGAATTCATACGTCAAAAACGTGCCACTGTGATGGGACCCCAGGGTTTA 660
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 576 ACCCCTCTTATGGAATTCATACGTCAAAAACGTGCTACTGTGATGGGATCCCAGGGTTTA 635
Query 661 TCTGATATTCGAAGAGGAGGTAGAAGAACCAGAGTAGTCTCTGCAAACAAGCCGAGTCCA 720
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 636 TCAGATGTTCGAAGAGGAGGTAGAAGAGCCAGAGTAGTCTCTGCAAACAAGCCGAGTTCA 695
Query 721 AGGCCCTCGAAACGTAACTCTGAAAAGAAAAAGTATGTGGAAAAAGAAAGTTCAAAGAAT 780
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 696 AGGCCCTCAAAACGAAACTCTGAAAAGAAAAAGTATGTGGAAAAAGACAGTTCAAAGAAC 755
Query 781 GTGCCCCGGAAGACTACAGCAGACGTCAGCAGCTCTAAGCCAGATTATCGTCAGTCAAAT 840
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GTGCCTCGGAAGAGTACAGCAGACGTCAGCAGCTCTAAGCCAGATTATCGTCAGTCAAAT 815
Query 841 TCAAGTGGAAAGGAA-CTACCAGGAAATGAAACTGCCGCTATCATTGATAGCTCTCCCCC 899
||||||||||| ||| || | |||| || | ||| || |||| |||||||||| |||
Sbjct 816 TCAAGTGGAAATGAAACTGGTAATAAATCAA-CAGCCCCTGTCATCGATAGCTCTCTCCC 874
Query 900 TGGGATAGCATTGACTATGGATTCTGGGAAGAAAAAGATTTTGCTCCTGA-GATCAAAAG 958
||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 875 AGGGATCGCATTGACTATGGATTCTGGGAAGAAAAAGATTTTGCTCCTGAAG-TCAAAAG 933
Query 959 ACCGAGACAATCCTGATAACCCTCCACCACAACCGGAACAGCATATAGACACTAATCTTT 1018
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 934 ACCGAGACAATCCTGATAACCCTCCACCACAACCGGAACAGCATATTGAAACTATTCTTT 993
Query 1019 CTAGAAACTCCACGGATTCAAGACAAAACCAGAAGAGTGATGTTGGTGGGAGGTTGATCA 1078
|| |||||||||||| ||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 994 CTGGAAACTCCACGGCTTCAAGACAGAATCAGAAGAGTGATGTTGGTGGGAGATTGATCA 1053
Query 1079 AGGGAATACTTCTGAGAAA-TGACTCTCGACCGAGCCAGTCTTCCACTTTTGTGCAGTCT 1137
||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||| ||
Sbjct 1054 AGGGAATACTTCTGA-AAAGTGACTCACGACCGAGCCAGTCTTCCACTTTTGTCCAGCCT 1112
Query 1138 GAGCAAAGAGTGGAACCCTCAGAAGCAGAAAACTACAAACGACCTTCTCGACCAGCCAAC 1197
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1113 GAGCAAAGAGTGGAACCCTCAGAAGCTGAAAACTACAAACGACCTCCTCGGCCAGCCAAC 1172
Query 1198 ACTCGAGCAGGGAAAGATTATCATACTTCTGGTACCATCAGTGAGAAGCAAGAGAGGCGT 1257
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1173 ACTCGAGCAGGGAAAGATTATCATGCTTCTGGTACCATCAGTGAGAAGCAAGAGAGACGT 1232
Query 1258 ACAAGAAACAAGGATAGACCTGATCGTGTTATGTGGGCTCCTC---GTCGTGATGG-T-- 1311
|||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
Sbjct 1233 ACAAGAAACAAGGACAGACCTGATCGTGTTGTGTGGGCTCCTCTTCGTCGTGATGGCTCC 1292
Query 1312 A------GTGAGGATCAACCACTATCTTCAGCAGGAAACAATGGAGAAGTGAAAGACAGG 1365
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AATATCAGTGAGGATCAACCACTATCTTCAGCAGGAAACAATGGAGAAGTGAAAGACAGG 1352
Query 1366 ATGTTCTCTCAAAGATCGGGAGAAGTGGTGAACTCCTCTGGTGGTCACACTCTTGAGAAT 1425
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1353 ATGTTCTCTCAAAGATCTGGAGAAGTGGTGAACTCCTCTGGTGGACACACTCTTGAGAAT 1412
Query 1426 GGTTCTGCCAGACATTCTAGTCGCCGTGTTGGAGGTCGCAATAGAAAAGAAGAGGTGGTG 1485
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1413 GGTTCTGCCAGACATTCTAGTCGTCGTGTTGGAGGTCGCAATAGAAAAGAAGAGTTGATG 1472
Query 1486 ATTGGCGAGGGTAAAACCTCCCGGAGAGGAAGTGGTGGTGGTCCCAGTTCACATGAGAAG 1545
| ||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct 1473 ACTGGTGAGGGTAAAACCTCCCGGAGAGGTGGTGGTGGTGGTCCCAATTCACAAGAGAAG 1532
Query 1546 CAAATGTGGATCCAAAAACCATCATCCGGTACTTGATATATTCTCTTAACATA-TGGCTA 1604
||||||||||| ||||||||||||| ||||||||||||||| | |||||| ||||||
Sbjct 1533 CAAATGTGGATTCAAAAACCATCATTGGGTACTTGATATATTA-CATAACATTGTGGCTA 1591
Query 1605 AATATATGAGCCATTCCACTGGATTTTGTCCTTCAATGGGAATCTATAGATCTCAATCGA 1664
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1592 AATATATGAGCCATTCCAATGGATTTTGTCCTTGAACGGGAATCTATAGATCTCAATCGA 1651
Query 1665 AATGGGGAAGTAACATTATCAACATCACTTGGGTTTTGGAGACTTTTGGTCCAACGTTGT 1724
|||||||| |||||| ||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1652 AATGGGGA-GTAACACTATCAACATCACTCGGGTTTTGGAGACTTTTGGTCCAATGTCGT 1710
Query 1725 AAGTCGTAGTATTGCACATAAAAGAGGCCGTTCTCAAAGTTAGGAATCAGCTCAAGATTT 1784
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1711 AAGTCGTAGTATTGCACATAAAAGAGGCCGTTCTCAAAGT-AGGAATCAGCTCAAGATTT 1769
Query 1785 ATGAGAAGTGAGATAAGAAAAACTCGTTTGCTACTGCCTTTTGAAGGCCCTAGCGGTTCA 1844
|||||| | |||| ||||||| | || | | ||| | | | | ||||
Sbjct 1770 ATGAGA-GAGAGACAAGAAAA----GA---CT-C-G--TTT-G----C----G-G-TTCA 1806
Query 1845 CGGTACCTGCATCCCCCCTTTTGGCTTGTGCGGTGTCACAGACAAGTGAGTGAGAAGTGA 1904
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1807 CGGTACCTGCATCCCCCCTTTTGGCTTGTGCGGTGTTACAGACAAGTGAGTGAGAAGTGA 1866
Query 1905 GAACTTACTCTCGAGTCTGAGTAATGAAAATAAAGTCAAAAGTGTATAGGGAGCGGGAAG 1964
|||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1867 GAACTTACTCCCAAGTCTGAGTAATGAAAATAAAGTTAAA-GTGTATAGGGAGCGGGAAA 1925
Query 1965 CACAGTGTGTCGGGTTTTATTTTGGGTTCCTGAGAGGCCTTAGAACTTGATTGCACGCTT 2024
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1926 TACAGTGTGTCGGGTTTTATTTTGGGTTCCTGAGAGGCCTTAGAACGTGATTGCACGATT 1985
Query 2025 TTAACCATATAAGAGTTTGATTACTTTGAAGTTAATTTCTTGCTAAGTAATATTTTCTTG 2084
|||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1986 TTAACCATATAATAGTTTGATTACTGTGAAGTTAATTTCTGGCTAAGTAATATTTTCTTG 2045
Query 2085 TGGAAGTTAGTTTATTT 2101
|||||||| ||||||||
Sbjct 2046 TGGAAGTTGGTTTATTT 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79989514500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5