BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G33990.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922500 jgi|Araly1|922500|scaffold_103781.1 1746 0.0
Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1 1029 0.0
> Ahg922500 jgi|Araly1|922500|scaffold_103781.1
Length=1088
Score = 1746 bits (945), Expect = 0.0
Identities = 1039/1085 (96%), Gaps = 3/1085 (0%)
Strand=Plus/Plus
Query 319 TTCTGGGTTCTTGATTTGGAAAGATGGGTAACAAGATAATCTCAATGATGAAGAAAGATA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTCTGGGTTCTTGATTTGGAAAGATGGGTAACAAGATAATCTCAATGATGAAGAAAGATA 61
Query 379 GCAAAGATGGAGGAGGAGGAGGATCTAAGAGCAAGAGAATGAATCGGTCTCAGAGGAAAT 438
|||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 62 GCAAAGAT---GGAGGAGGAGGATCTAAGAGCAAAAGAATGAATCGGTCACAAAGGAAAT 118
Query 439 TACTTGCTGATGAAGAGATGTTGCATCGTCGAGCTCTTTCCATGGCGATTCATCAAGCTC 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TACTTGCTGATGAAGAGATGTTGCATCGTCGAGCTCTTTCCATGGCGATTCATCAAGCTC 178
Query 499 AGCTTTCTCAGAGATTTGATGGATCTATGTCTAGACGGGTCGGGTCTACTAGTACTAGGA 558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 179 AGCTTTCTCAGAGATTTGATGGATCTATGTCTAGACGAGTCGGGTCTACTAGTACCAGAA 238
Query 559 AACGTACTCTCTCTGACCCGTTTTCTAATGGCAAGCAGGTACCTGATTTTTCAGAGAGCT 618
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AACGAACTCTCTCTGACCCGTTTTCTAATGGCAAGCAGGTACCTGATTTTTCAGAGAGCT 298
Query 619 TGATAGTGAAGAAATTTGTTCTGGTGCACGGTGAAGGATTTGGGGCATGGTGTTGGTACA 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGATAGTGAAGAAATTTGTTCTGGTGCACGGTGAAGGATTTGGGGCATGGTGTTGGTACA 358
Query 679 AAATGGTTGCTTCATTGGAAGAGTCAGGACTGTCTCCTGTTACAGTTGACCTCACTGGGT 738
| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 AGATGGTTGCTTCACTGGAAGAGTCAGGACTGTCTCCTACTACAGTTGACCTCACTGGGT 418
Query 739 GTGGATTTAATATGACTGACACAAATACTGTCTCTACCTTGGAGGAATATTCAAAACCGT 798
|||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||
Sbjct 419 GTGGATTTAATATGACGGACACAAACAGTGTCTCTACCTTGGAGGAATATTCAAGACCGT 478
Query 799 TGATCGATCTCCTCGAAAATCTCCCCGAAGAAGAGAAGGTTATTCTAGTGGGTCACAGTA 858
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 479 TGATCGAGCTCCTTGAAAATCTCCCTGAAGAAGAGAAGGTTATTCTAGTGGGTCATAGTA 538
Query 859 CTGGAGGTGCTTCCATTTCATATGCGTTAGAGAGGTTTCCAGAGAAAATCTCTAAAGCTA 918
||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 539 CTGGAGGTGCTTCAATTTCATATGCGTTAGAGCGGTTTCCAGAGAAAATCTCAAAAGCTA 598
Query 919 TATTCGTATGTGCAACAATGGTTTCTGATGGCCAAAGACCTTTTGATGTTTTCTCTGAAG 978
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 TATTTGTATGTGCAACCATGGTTTCTGATGGCCAAAGACCCTTTGATGTTTTCTCTGAAG 658
Query 979 AGCTTGGTTCCGCAGAGCGGTTCATGAAAGAGTCGCAGTTCTTGATTTATGGGAACGGTA 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 659 AGCTTGGTTCCGCAGAGCGGTTCATGAAAGAGTCGCAGTTCTTGATTTATGGGAATGGAA 718
Query 1039 AAGACAAGCCTCCTACGGGGTTCATGTTTGAGAAGCCACATATGAAAGGCTTGTATTTCA 1098
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 AAAACAAGCCTCCTACGGGGTTCATGTTTGAGAAGCCACACATGAAAGGCTTGTATTTCA 778
Query 1099 ATCAATCACCCAACAAGGATATAGCATTGGCGATGATCTCAATGAGACCTGTACCACTCG 1158
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 779 ATCAATCACCCAACAAGGATATAGCATTGGCAATGATCTCAATGCGACCTGTACCACTCG 838
Query 1159 GACCAATGATGGAGAAAGTATCTCTAACCGCAGAAAGATATGGGAAAGGGAGAAGATTCT 1218
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 839 GACCAATGATGGAGAAGGTATCTCTGACCGCAGAAAGATACGGGAAAGGGAGAAGATTCT 898
Query 1219 ACGTCCAGACGCTAGATGACCGTGCACTTTCACCAGATGTTCAAGAGAAGTTAGTGAGAG 1278
| |||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 899 ATGTCCAGACACTAGATGACCGTGCGCTCTCACCAGATGTTCAAGAGAAGGTAGTGAGAG 958
Query 1279 AGAACAGCCCTGAAGGAGTCTTCAAGATCAAAGGAAGTGATCATTGCCCTTTCTTCTCAA 1338
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 AGAACAGCCCTGAAGGAGTCTTCAAGATCAAAGGAAGTGATCATTGTCCTTTCTTCTCAA 1018
Query 1339 AGCCTCAATCTCTCCACAAAATCCTTCTGGAGATTGCACAGATTCCTTAACAAAGCTCTG 1398
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1019 AGCCTCAATCTCTCCACAAAATTCTTCTCGAGATTGCACAGATTCCTTAACAAAGATCTG 1078
Query 1399 AGATT 1403
|||||
Sbjct 1079 AGATT 1083
> Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1
Length=1266
Score = 1029 bits (557), Expect = 0.0
Identities = 916/1085 (84%), Gaps = 42/1085 (4%)
Strand=Plus/Plus
Query 331 GATTTGGAAAGATGGGTAACAAGA-TAATCT-CAATGATGAAGAAAGA--TAG-CA-AAG 384
|||||| ||| ||||||||| ||| |||||| | |||| ||||||||| | | | ||
Sbjct 172 GATTTGTAAAAATGGGTAAC-AGAGTAATCTGC-ATGAAGAAGAAAGATGTTGTTATCAG 229
Query 385 ATGGAGGAGGAGGA-GGATCTAAG-AGCAAGAGAATGAATCGGTCTCAGAGGAAATTACT 442
| | |||||| || ||||| || ||||||||| ||||| | || || ||||| || ||
Sbjct 230 A-AGTGGAGGA-GATGGATC-CAGAAGCAAGAGAGTGAATTGTTCACAAAGGAAGTTGCT 286
Query 443 TGCTGATGAAGAG-ATGTTGCATCGTCGAGCTCTT-TCCATGGCGATTCATCAAGCTCAG 500
||||||||||||| || |||||||| | |||| || || ||||| |||||||||||||||
Sbjct 287 TGCTGATGAAGAGAAT-TTGCATCGACAAGCT-TTGTCTATGGCTATTCATCAAGCTCAG 344
Query 501 CTTTCTCAGAGATTTGATGGATCTATGTCTAGACGGGTCGGGTCTACTAG-TACTAGGAA 559
|||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||
Sbjct 345 GTTTCTCAGAGATTTGATGGATCTATGTCTAGACGTATCGGGTCTACTAGCT-CTAG-AA 402
Query 560 -ACGTACTCTCTCTGACCCGTTTTCTAATGGCAAGCAGGTACCTGA-TTTTTCAGAGAGC 617
| | || ||||||||||| ||| ||||| ||| ||||||||||| ||||| ||| ||
Sbjct 403 GAGGAACACTCTCTGACCCATTTGCTAATAACAAACAGGTACCTGAGTTTTTG-GAGGGC 461
Query 618 TTGATAG-TGAAGAAATTTGTTCTGGTGCACGGTGAAGGATTTGGGGCATGGTGTTGGTA 676
|||| || | |||||||| ||| |||| || |||||||| ||||||||||||||||||||
Sbjct 462 TTGA-AGGTTAAGAAATTCGTTTTGGTTCATGGTGAAGGGTTTGGGGCATGGTGTTGGTA 520
Query 677 CAAAA-TGGTTGCTTCATTGGAAGAGTCAGGACTGTCTCCTGTTACAGTTGACCTCACTG 735
||||| | |||||| |||||||||||| ||||| | ||||||||||||||| || |||
Sbjct 521 CAAAAATA-TTGCTTTATTGGAAGAGTCTGGACTATATCCTGTTACAGTTGATCTGGCTG 579
Query 736 GGTGTGGATTTAATATGACTGACACAAATA-CTGTCTCTACCTTGGAGGAATATTCAAAA 794
| | ||||||||||||||||||| | |||| | || || || || || ||||||||||||
Sbjct 580 GTTCTGGATTTAATATGACTGACGCCAATAGC-GTTTCCACGTTAGAAGAATATTCAAAA 638
Query 795 CCGTTGATCGATCTCCT-CGAAAATCTCCCCGAAGAAGAGAAGGTTATTCTAGTGGGTCA 853
||||||||||| ||||| | ||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 639 CCGTTGATCGAGCTCCTTC-AAAATCTTCCCGAGGAAGAAAAGGTTATTCTGGTGGGTCA 697
Query 854 CAGTACTGGAGGTGCTTCCATTTCATATGCGTTAGAGAGGTTTCCAGAGAAAATCTCTAA 913
||||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||
Sbjct 698 CAGTACTGGAGGTGCATGTGTTTCCTATGCGTTAGAGCGGTATCCAGAGAAAATCTCAAA 757
Query 914 AGCTATATTCGTATGTGCAACAATGGTTTCTGATGGCCAAAGACCTTTTGATGT-TTTCT 972
|||||||||| |||||||||| |||||| ||||||| |||||||| |||||||| |||
Sbjct 758 AGCTATATTCATATGTGCAACTATGGTTACTGATGGACAAAGACCCTTTGATGTCTTTG- 816
Query 973 CTGAAGAGCTTGGTTCCGCAGAGCGGTTCATGAAAGAGTCGCAGTTCTTGATTTATGGGA 1032
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 817 CTGATGAGCTTGGTTCTGCAGAACGGTTCATGAAAGAGTCGCAGTTCTTGATCTATGGGA 876
Query 1033 ACGGTAAAGACAAGCCTC-CTACGGGGTTCATGTTTGAGAAGCCACATATGAAAGGCTTG 1091
|||| ||||||||||| | |||||||||||||||||||||| | ||| ||||||||||||
Sbjct 877 ACGGCAAAGACAAGCC-CGCTACGGGGTTCATGTTTGAGAAACAACACATGAAAGGCTTG 935
Query 1092 TATTTCAATCAATCACCCAACAAGGATATAGCATTGGCGATGATCTCAATGAGACCTGTA 1151
|| |||||||| |||||||| ||||| || |||||| ||| ||| || ||| ||||||||
Sbjct 936 TACTTCAATCAGTCACCCAATAAGGACATTGCATTGTCGACGATATCGATGCGACCTGTA 995
Query 1152 CCACTCGGACCAATGATGGAGAAAG-TATCTCTAACCGCAGAAAGATATGGGAAAGGGAG 1210
||| | || || ||||||||||| | | || || | |||||||| ||||||||||| |
Sbjct 996 CCATTAGGTCCCATGATGGAGAA-GCTGTCGCTTAGTGCAGAAAGGTATGGGAAAGGTCG 1054
Query 1211 AAGATTCTACGTCCAGACGCTAGATGACCGTG-CACTTTCACCAGATGTTCAAGAGAAGT 1269
||||||||| || |||||||| |||||| || | |||||||| || |||||||||||
Sbjct 1055 AAGATTCTATGTTCAGACGCTCGATGACT-TGGCTCTTTCACCGGACGTTCAAGAGAAAC 1113
Query 1270 TAGTGAGAGAGAACAGCCCTGAAGGAGTCTTCAAGATCAAAGGAAGTGATCATTGCCCTT 1329
| || |||||||| || ||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 1114 TGGTCAGAGAGAATAGTCCTGAAGCAGTTTTTAAGATCAAAGGAAGTGATCATTGCCCTT 1173
Query 1330 TCTTCTC-AAAGCCTCAATCTCTCCACAAAATCCTTCTGGAGATTGCACAGATTCCTTAA 1388
||||||| ||| ||||| ||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 1174 TCTTCTCTAAA-CCTCAGTCTCTTCACAAGATCCTTCTTGAGATAGCTCAGATTCCTTAA 1232
Query 1389 CAAAG 1393
||||
Sbjct 1233 -AAAG 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5