BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34000.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922501 jgi|Araly1|922501|scaffold_103782.1 856 0.0
> Ahg922501 jgi|Araly1|922501|scaffold_103782.1
Length=566
Score = 856 bits (463), Expect = 0.0
Identities = 534/567 (94%), Gaps = 10/567 (2%)
Strand=Plus/Plus
Query 46 CAATTCAACT-AACaaaaaaaTGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 104
|||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATTCAACTAAACGAAAAGATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 60
Query 105 ATCCATCATC-T--TCATC-T--TCTTCTTCGACAGCTTCGTCGTCTTTTAGATTCTCAA 158
|||||||||| | || || | |||||||| ||||||||||||||||||||||||||||
Sbjct 61 ATCCATCATCTTCCTCTTCTTCATCTTCTTCAACAGCTTCGTCGTCTTTTAGATTCTCAA 120
Query 159 CAACGACTAAGCCATGTGTCTTCATCATCAGATGCTCTCAGACAGAAGGTCCTTTAAGAA 218
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CGACGACTAAGCCATGTGTATTCATCATCAGATGTTCTCAGACAGAAGGTCCTTTAAGAA 180
Query 219 GACCATCGGCTCCTCCTACTCTCCGGGAGCCTCAAAAACCTGTTCCTCCATCACAGCCAT 278
| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 181 GGCCCTCGGCTCCTCCTACTCTCCGGGAGCCGCAAAAACCTGTTCCTCCATCGCAGCCGT 240
Query 279 CTTCCT-CTCCTCCTCCTTCTCCGCCGCCGCAGAAAGCTGTAGCTGTTGATGGGAAGAGT 337
||| || ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 CTT-CTGCTCCTCCTCCTCCTCCCCCGCCGCAGAAAGCTGTGGCTGTTGATGGGAAGAGT 299
Query 338 GTAACTACAGTGGAGTTTCAGAGACAAAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 397
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 GTAACTACGGTGGAGTTTCAGAGACAGAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 359
Query 398 AAAAAGCTTGAAGCTGCTGGTCAAGGTCCCTTTTTTGGTTTCCAACCCAAAAATGAGATC 457
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 AAGAAGCTTGAAGCTGCTGGTCAAGGTCCTTTTTTTGGTTTCCAACCCAAAAATGAGATC 419
Query 458 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGTATGCTCACAGAGTATGCAACA 517
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGAATGCTCACAGAGTATGCAACA 479
Query 518 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCAAATTTCGGCATTCTAGACTTG 577
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 480 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCGAATTTCGGCATTGTAGACTTG 539
Query 578 GAATAATAAGAGTGTTGTTGTTATATA 604
||||||||||||||||||| | |||||
Sbjct 540 GAATAATAAGAGTGTTGTTAT-ATATA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5