BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34010.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313917 jgi|Araly1|313917|fgenesh1_pm.C_scaffold_1002697 767 0.0
> Ahg313917 jgi|Araly1|313917|fgenesh1_pm.C_scaffold_1002697
Length=564
Score = 767 bits (415), Expect = 0.0
Identities = 523/570 (92%), Gaps = 27/570 (5%)
Strand=Plus/Plus
Query 162 ATGTTATTTGCAGCAGAAGGAGGAGGATTCTTCTCTTCATCAGCTTCTGGTTATAGCAAT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTATTTGCAGCAGAAGGAGGAGGATTCTTCTCTTCATCAGCTTCTGGTTATAGCAAT 60
Query 222 GGTTTAGCTCTTCTTCTATTAGGTCAAAAGACTGAACAAAAACCAATCAAAGT-T--TCA 278
||||||||||||||||||||||||||||||| |||||||||||| |||||||| | |||
Sbjct 61 GGTTTAGCTCTTCTTCTATTAGGTCAAAAGAATGAACAAAAACCTATCAAAGTATCATCA 120
Query 279 TCACAATGGAACCATTATCATTTAGTTCTTGAAGATTCTGATACCGGGTTTCGGTTAGAT 338
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 121 TCACAATGGAACCATTATCATTTAGTGGTTGAAGAATCTGATACTGGGTTTCGGTTAGAT 180
Query 339 TCGTCTAAGAATTGGCTCTCTTCTGCTTGCACTTCTCTCATATGTTTTGGTCGAAAATCC 398
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 181 TCGTCTAAGAATTGGCTCTCTTCTGCCTGCACTTCACTTATATGTTTTGGTCGAAAATCC 240
Query 399 GAAAGACTGGAAAG-----C-G--A---G-GGGAAGAA--A-GATG-A--GGCACCGAGT 440
|||||||| ||||| | | | | |||||||| | || | | ||||||||||
Sbjct 241 GAAAGACTTGAAAGTCCATCTGATATTCGAGGGAAGAAGGATGAGGCAGTGGCACCGAGT 300
Query 441 GTGGAGGACTATAATAACTGTGAAGTCACTAATAGGTTTGCACTTAAAAGCAGCTTGAAG 500
||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTGGA-G--TATAAT---TGTGAAGTTACTAATAGGTTTGCACTTAAAAGCAGCTTGAAG 354
Query 501 AAAAGATCGTTTAGTGATGTTGTGATTGGTGATGATGATGTGAGTAGAGATGGTGTGGTG 560
|| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGCGGTCATTTAGCGATGTTGTGATTGGTGATGATGATGTGAGTAGAGATGGTGTGGTG 414
Query 561 GATCATATAGATAGAAGGAAAGTGCAGTGGCCTGATACATGTGGTATTGAGATTGCTGAG 620
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 GATCATACAGATAGAAGGAAAGTGCAGTGGCCTGATACTTGTGGTATTGAGATTGCTGAG 474
Query 621 GTCAGAGAATTTGAGCCTAGTGAAGTTGATGAATCAGAAGATGAGTTTCATCATGGAAGT 680
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 GTCAGAGAATTTGAGCCTAGTGAAGTTGATGAATCAGACGATGAGTTTCATCATGGAAGT 534
Query 681 GGAAAAAGCTGTATGTGCACAATCATGTGA 710
||||||||||||||||||||||||||||||
Sbjct 535 GGAAAAAGCTGTATGTGCACAATCATGTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5