BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34020.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473556 jgi|Araly1|473556|fgenesh2_kg.1__3510__AT1G34020.1 2194 0.0
> Ahg473556 jgi|Araly1|473556|fgenesh2_kg.1__3510__AT1G34020.1
Length=1437
Score = 2194 bits (1188), Expect = 0.0
Identities = 1372/1458 (94%), Gaps = 23/1458 (2%)
Strand=Plus/Plus
Query 6 TACACTCTCTTGTCACTCCACGAGCCCTACGCTTCCCAACCGCCTGCCTTTTTCAGATTA 65
||| ||||||| || |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 TACTCTCTCTTCTCGCTCCACGAGCCCTACGCTTCACAA----CTGCCTTTTTCAGATTA 56
Query 66 CCTCCGGTTTCTACCACTCTCGCCGTCGCCGTCACCGGTACTCCGATCACCTCCGCACGA 125
|||||| ||||||||||||||| | || || | ||||||||| ||||||||||
Sbjct 57 CCTCCGATTTCTACCACTCTCG-C--CG--GT-----G--CTCCGATCATCTCCGCACGA 104
Query 126 TTCATTTCCTATTTGCATTTTTCACCTCTCTAGCGGAAAGTGAGTCTTCTCGAGAATGGG 185
||||||||| |||||| |||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 105 TTCATTTCCGATTTGCGTTTTTCTCCTCTTTAGCGGAAAGTGAGTCTTCTGGAGAATGGG 164
Query 186 AGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAGTTAGTTCAGAAAAATG 245
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 165 AGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAG--A--TCA-AAAAATG 219
Query 246 GCTCCAGTGAGTAAAGCTGATAAGAAGGCAGCCGTAGATGCTGCTGCGTGGATGTTCAAT 305
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 220 GCTCCTGTGAGTAAAGCTGATAAGAAGGCAGCAGTAGATGCTGCTGCGTGGATGTTCAAT 279
Query 306 GTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTAT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTAT 339
Query 366 AGCTTTGCTACAACGTTAACTGGTTTACATTTCGCTACAACGACTCTGATGACGCTTGTT 425
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 340 AGCTTTGCTACAACCTTAACCGGTTTACATTTCGCGACAACGACTCTGATGACGATTGTT 399
Query 426 TTAAGATGTCTTGGTTACATTCAGCCTTCTCATCTTCCGTTTACGGAGCTTTTGAGATTT 485
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TTAAGATGTCTTGGTTATATTCAGCCTTCTCATCTTCCGTTTACGGAGCTTTTGAGATTT 459
Query 486 ATTCTGTTTGCTAATTTCTCCATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTT 545
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATTCTGTTTGCGAATTTCTCGATTGTTGGAATGAATGTCAGTCTTATGTGGAACTCTGTC 519
Query 546 GGTTTTTATCAGATTGCTAAGCTCAGCATGATTCCTGTATCTTGTTTGTTGGAAATGGTT 605
||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 520 GGTTTCTATCAGATTGCCAAGCTCAGTATGATTCCTGTATCCTGTTTGTTGGAAATGGTT 579
Query 606 TTCGATAAGATTCGTTATTCCAGAGATACAAAGCTTAGCATAGGACTGGTTCTTGTGGGT 665
||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 580 TTCGATAAGATTCGTTACTCCAGAGACACAAAGCTTAGCATAGGATTGGTTCTTGTGGGT 639
Query 666 GTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGATTTGTAGCCGCTTTC 725
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 GTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGCTTTGTAGCCGCTTTC 699
Query 726 GTTGCTGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTCAGCGCAAGTAC 785
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTTGCCGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTCAGCGCAAGTAC 759
Query 786 TCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCCGCAACATTACTG 845
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 760 TCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCTGCAACATTGCTG 819
Query 846 GTAGTTGGCCCGTTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACATGTACGATTAC 905
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 820 GTAGTTGGCCCATTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACATGTACGACTAC 879
Query 906 AACTTGGTTTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATTGGAACCAACCTA 965
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 880 AATTTGGTCTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATCGGAACCAACCTA 939
Query 966 AGCCAGTTCATCTGCATCGGAAGATTCACAGCTGTATCGTTCCAAGTGCTGGGACACATG 1025
||||||||||||||||| || |||||||| ||||| ||||||||||| || |||||||||
Sbjct 940 AGCCAGTTCATCTGCATTGGGAGATTCACGGCTGTGTCGTTCCAAGTCCTAGGACACATG 999
Query 1026 AAGACGATCCTGGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGTCTTAACTTG 1085
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1000 AAGACGATCCTAGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGTCTAAACTTG 1059
Query 1086 CACGTGGTTGTTGGAATGATAATTGCAGTACTGGGTATGATCTGGTACGGTAATGCCTCT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CACGTGGTTGTTGGAATGATAATTGCAGTACTGGGTATGATCTGGTACGGTAATGCCTCT 1119
Query 1146 TCGAAGCCAGGAGGCAAAGAGCGACGAAACTATTCTCTTCCAACTACCCGTCAACAGAAA 1205
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1120 TCGAAGCCAGGAGGCAAAGAGCGACGAAACTATTCTCTTCCAACGACCCGTCAACAGAAA 1179
Query 1206 CTCGGAGCTGCTTCGGATTCTGACGACAACGAAGACAAAGCCTAGTAGTAAGTAGTATAT 1265
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1180 CTTGGAGCTGCTTCGGATTCGGACGACAACGAAGACAAAGCCTAGTAGTAAGTAGTAAAT 1239
Query 1266 TATCAGGAACATCACATAGTTACGTCTCTGTTTTGAGTTGtt-tttttATT-AGCTTAAT 1323
||||||||||||||||||||||| |||||||||||| ||||| ||||| || || |||||
Sbjct 1240 TATCAGGAACATCACATAGTTACATCTCTGTTTTGAATTGTTCTTTTTTTTTAGTTTAAT 1299
Query 1324 TTATGATTCTCGTGCTAAATTTTGGTTTGGTACGAAAGAAAGCGAATTTTTTCATACAGA 1383
|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1300 TTATGATTCTCGTGCTAAATTTTGGTTTAGTGCGAAAGAAAGCGATTTTTTTCATACAGA 1359
Query 1384 CGTTTGAGATTTTTGTAATGCATTTTTGCGAAATCAAGTTACATCAACGCACAGCTTTCA 1443
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
Sbjct 1360 CGATTGAGATTTTTGTAATGCATTTTTGCGGAATCAAGTTACCTCAACGCACGGCTTCCC 1419
Query 1444 ATATTGAAATAAGAAATT 1461
|||||| |||||||||||
Sbjct 1420 ATATTGCAATAAGAAATT 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5