BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34030.1
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473557 jgi|Araly1|473557|fgenesh2_kg.1__3511__AT1G34030.1 904 0.0
Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1 669 0.0
> Ahg473557 jgi|Araly1|473557|fgenesh2_kg.1__3511__AT1G34030.1
Length=564
Score = 904 bits (489), Expect = 0.0
Identities = 541/566 (96%), Gaps = 4/566 (1%)
Strand=Plus/Plus
Query 25 AGAGAAAGCTTGAAGACGGCGAGAGCTCCATCTTTTCTCAGGCATC-TCTTATCTTCAAA 83
||||||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||
Sbjct 1 AGAGAAAGCTTGAAGACGGCGAGAGCTCCATCTTTTCACAGGCA-CTTCTTCTCTACAAT 59
Query 84 TCACAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTTTGCGTGTGCTCAACACTA 143
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 TCACAATGTCTCTGGTAGCAAATGAGGAGTTCCAGCACATTTTGCGTGTGCTCAACACTA 119
Query 144 ACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGAAGGA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 ACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGGAGGC 179
Query 204 GATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAGT 263
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 GATTGGCCAACATTGTTTGCAAAAAAGCCGATGTCGACATGAACAAGAGGGCTGGTGAGT 239
Query 264 TATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCAAGACAGTTCAAGA 323
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCGAGACAGTTCAAGA 299
Query 324 TTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGGGAAGTACTCTCAAGTTG 383
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 300 TTCCAGACTGGTTTTTGAACAGACAGAAAGACTACAAGGACGGCAAGTACTCTCAAGTTG 359
Query 384 TCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCGTCTCAAGAAAATCAGAA 443
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 TCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAACGTCTCAAGAAAATCAGAA 419
Query 444 ACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAA 503
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 420 ACCACCGTGGTCTGAGACATTACTGGGGTCTCCGAGTCCGTGGACAACACACCAAGACCA 479
Query 504 CTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAGCCAATGTTGCTAGTT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAGCCAATGTTGCTAGTT 539
Query 564 GCAGCTGGATTGGATCT-TTGATAAG 588
| ||||||||||| | | ||||||||
Sbjct 540 GAAGCTGGATTGGTT-TATTGATAAG 564
> Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1
Length=693
Score = 669 bits (362), Expect = 0.0
Identities = 478/533 (90%), Gaps = 11/533 (2%)
Strand=Plus/Plus
Query 68 ATCTCTTATCTTCAAATCACAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATT-TT 126
||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 86 ATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTT 145
Query 127 GCGTGTGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTAT 186
|||||| | ||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 146 -CGTGTGTTGAACACAAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTAT 204
Query 187 CAAAGGTATTGGAAGGAGATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAA 246
|||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 205 CAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAA 264
Query 247 CAAGAGGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAA 306
||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 265 CAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAA 324
Query 307 CCCAAGACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGG 366
|||| | ||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 325 CCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGG 384
Query 367 GAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCG 426
||||| |||||||||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 385 CAAGTATTCTCAAGTTGTCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACG 444
Query 427 TCTCAAGAAAATCAGAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGG 486
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 445 TCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGAGAGG 504
Query 487 ACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTA 546
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 505 ACAACACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTA 564
Query 547 A-GC-----C-AATGTTGCTAGTTGCAGCTGGATTGGAT-CTTTGATAAGGAC 591
| || | |||||||||| || | |||| ||||||| ||| ||||||||
Sbjct 565 AAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTGGATACTTC-ATAAGGAC 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28287204414
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5