BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34040.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473558 jgi|Araly1|473558|fgenesh2_kg.1__3512__AT1G34040.1 1927 0.0
Ahg473561 jgi|Araly1|473561|fgenesh2_kg.1__3515__AT1G34060.1 1349 0.0
> Ahg473558 jgi|Araly1|473558|fgenesh2_kg.1__3512__AT1G34040.1
Length=1383
Score = 1927 bits (1043), Expect = 0.0
Identities = 1275/1386 (92%), Gaps = 19/1386 (1%)
Strand=Plus/Plus
Query 1 ATGATACATAACAAGCTACTCA-TTGCAGGGTCGATCATCTTGAATCTTGTTTTCACCAT 59
||||| |||||||||||||| | |||||| |||||| |||||||||||| | |||||| |
Sbjct 1 ATGATGCATAACAAGCTACT-AGTTGCAGTGTCGATAATCTTGAATCTTCTATTCACCGT 59
Query 60 TCATATTCTTTATAATAATACAAGCACATGGAGTCCAACGTGGACCAATAGAGCCGCCTT 119
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TCATATTCTTTATAATAATTCAACCACATGGAGTCCAACGTGGACCGATAGAGCCGCCTC 119
Query 120 GGAGGCAGAAGCTGCAGCCTCTGTTTCATGCTCAGGCCATGGCAGATCTTACGTGGACGG 179
||||||||||| |||||| |||||||| |||||||||||||||||| |||| ||||||||
Sbjct 120 GGAGGCAGAAGATGCAGCTTCTGTTTCTTGCTCAGGCCATGGCAGAGCTTATGTGGACGG 179
Query 180 TCTTGGTGTCCTTGACGGCCATAAA---CCTTGTGAGTGTC-ACGATTGCTACACAGGCA 235
||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct 180 TCTTGGTGTCCTTGACGGCCATAAACCTCCTTGTGAGTG-CAATAATTGCTACACAGGCA 238
Query 236 AAGATTGCTCCGTTC-TTCTCA-AAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTT 293
||||||||||| ||| || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 239 AAGATTGCTCC-TTCTTTGT-ACCAGATTGTCCTGTCGATGCTGACTCAGGAGACCCTTT 296
Query 294 GTTCTTGGAGCCTTTCTGGATTCGAAAGGCAGAGGAAAGTGCGGTTGTTGAGTCAGGATG 353
||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 297 GTTTTTGGAGCCTTTCTGGATTCGAAACGCAGAGGGAAGTGCGGTTGTTGAGTCAGGATG 356
Query 354 GCACAGGATGAGTTATACTTTTAACGGATATGGCTTGTTTATGTCGGCAGAGCTTGAGAA 413
|||||||||||||||| | | | |||| |||||||| ||| ||||||||||||||||||
Sbjct 357 GCACAGGATGAGTTATTCCTATCACGGCTATGGCTTATTTGTGTCGGCAGAGCTTGAGAG 416
Query 414 GATCATTAGAAAGTTACATAATGTAGTGGGAAATGCAGTTACTGATAACAGATTCATAAT 473
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 417 GATCATTAGAAAGCTACATAATGTGGTGGGAAATGCAGTTACTGATAACAGATTCATTAT 476
Query 474 CTTTGGAGCTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCTCAAACAAA 533
||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 CTTCGGAACTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATGCCTTGTCCCAAACAAA 536
Query 534 -T--TCAT--T-ATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATTTGTACAA 587
| |||| | |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 537 TTCATCATCATCATCTCCTTCAAGACTTGTGACTTCTGTTCCATACTACAATATGAACAA 596
Query 588 ACAACAAGCAGATTTCTTTAATTCTACCAATCTCAAGTTTGAAGGAGATGCGTCTGCGTG 647
| | |||||||| |||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 597 AGACCAAGCAGAGTTCTTTAATTCTGCCGATCTCAAGTTTGAAGGAGATGCGTCCGCGTG 656
Query 648 GAAGAGGAGCGAGCGCAATGATGATATTAAACAAGTTATAGAGATAGTGACATCTCCGAA 707
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 657 GAAGAGGAGCGAGCGCAATGATAATATGACACAAGTTATAGAGATAGTGACATCTCCGAA 716
Query 708 TAATCCAGATGGGAAGCTGAAAAGAGCGGTTCTTGATGGTCCTAATGTGAAATACATTCA 767
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 TAATCCAGATGGGAAGCTTAAAAGAGCGGTTCTTGATGGTCCTAATGTCAAATACATTCA 776
Query 768 TGATTATGCTTACTACTGGCCTTATTTTTCACCTATTACACGTCAAGCTGATGAAGATTT 827
|||||||||||| |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 777 TGATTATGCTTATTACTGGCCTTATTTTTCACCTATTACACATCCTGTTGATGAAGATTT 836
Query 828 GAGCTTGTTCAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGGCTGGGCATT 887
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 GAGCCTGTTTAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGACTGGGCATT 896
Query 888 AGTAAAAGAGAAAACTGTTTATGAAAAAATGAAAATATATATAAGTCTAAGTAGTATGGG 947
||||||||| ||| ||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 897 AGTAAAAGACAAAGCTGTTTATGAAAAAATGAAAACATATATAATTCTAAGTACTATGGG 956
Query 948 AGTTTCAAGAGACACACAGCTTCGTGCTTTGCAGTTGCTTAAAGTAGTGATTGGTGATGG 1007
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 957 AGTTTCAAAAGACACACAGCTTCATGCTTTGCAGTTGCTTAAAGTAGTGATTGGCGATGG 1016
Query 1008 AGGCAATGAAATATTCCGTTTTGGTTATGGAACCTTGaaaaaaaGATGGGAGATTTTGAA 1067
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGGGATGAAATATTCAGTTTTGGTTATGGAACCTTGAAAAAAAGATGGGAGATTTTGAA 1076
Query 1068 CAAGATTTTTTCCATGTCTACGCGTTTTTCGCTCGAAACTATCAAACCTGAGTATTGCAA 1127
|||||| ||||||||||| ||||||||||||||| | |||||||||||| ||||||||||
Sbjct 1077 CAAGATCTTTTCCATGTCCACGCGTTTTTCGCTCCAGACTATCAAACCTCAGTATTGCAA 1136
Query 1128 CTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACC 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGAAGTGTGAGAGACC 1196
Query 1188 AGAAGACACAGACTGCTATGAGATTTTCAAAGCGGCGAAGATAACAGGACGTAATGGGGA 1247
|||||||| | |||||||||||||||||| ||||| ||||||||| ||||| ||||| |
Sbjct 1197 AGAAGACAAAAACTGCTATGAGATTTTCAGAGCGGTGAAGATAACTGGACGCAATGGC-A 1255
Query 1248 AA-TGTTTGGATCGGATGAAAGGTTTGTGCGGCTAAGTCTCATCAGATCACAAGACGACT 1306
| |||||||||| || |||||||||||||| | |||||||||||||||||||||||||
Sbjct 1256 ATGTGTTTGGATCAGAAGAAAGGTTTGTGCGATTGAGTCTCATCAGATCACAAGACGACT 1315
Query 1307 TTGATCAGCTTATTGCAATGTTGAAGAAGTTTGTCTCCAAGGAAGCTGTAGTTGTTGACT 1366
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 1316 TTGATCAGCTTATTGCTATATTGAAGAAGTTTGTCTCCAAGGAAGCTGTCGTAGTTGACT 1375
Query 1367 CCATCT 1372
|| |||
Sbjct 1376 CCGTCT 1381
> Ahg473561 jgi|Araly1|473561|fgenesh2_kg.1__3515__AT1G34060.1
Length=1539
Score = 1349 bits (730), Expect = 0.0
Identities = 1187/1402 (85%), Gaps = 54/1402 (4%)
Strand=Plus/Plus
Query 3 GATACATAACAAGCTAC-TCATTGCAGGGTCGATCATCTTGAATCTTGTTTTCACCATTC 61
||| || || ||||||| || || ||| ||| ||| | |||||||| || |||||| |||
Sbjct 71 GATGCAGAAGAAGCTACTTC-TTACAGTGTCAATCTTTTTGAATCTCGTATTCACCGTTC 129
Query 62 ATATTCTTTATAATAATACAAGC-ACATGGAGTCCAACGTGGACCAATAGAGCCGCCTTG 120
||||||||||| ||| | ||| | ||||||| ||| |||||||||| |||||| ||| |
Sbjct 130 ATATTCTTTATTATAGTTCAA-CTACATGGAATCCGACGTGGACCACTAGAGCTGCCGCG 188
Query 121 GAGGCAGAAGCTGCAGCCTCTGTTTCATGCTCAGGCCATGGCAGATCTTACGTGGACGGT 180
|| |||||| ||| ||||||| |||||||||||||||| |||||| ||| ||||| |||
Sbjct 189 GAAGCAGAAACTGTAGCCTCTTTTTCATGCTCAGGCCACGGCAGAGCTTTTGTGGATGGT 248
Query 181 CTTGGTGTCCTTGACGGCCATAAA-C--CTTGTGAGTGTC-ACGATTGCTACACAGGCAA 236
|||||||||||||| ||||| ||| | |||||||||| | || |||||||||| || ||
Sbjct 249 CTTGGTGTCCTTGATGGCCAGAAACCTTCTTGTGAGTG-CAACAATTGCTACACCGGAAA 307
Query 237 AGATTGCTCCGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTT 296
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AGATTGCTCTGTTCTTCTCAAAGATTGTCCTGTCGATGCTAACTCAGGAGACCCTTTGTT 367
Query 297 CTTGGAGCCTTTCTGGATTCGA-AAGGCAGAGGA-AAGTGCGGTTGTT-GAGTCAGGATG 353
|||||||||||||||||| ||| || ||||| || || |||||| || | || |||||
Sbjct 368 CTTGGAGCCTTTCTGGATGCGACAA-GCAGA-GAGCAGCGCGGTT-TTGGTCTCGGGATG 424
Query 354 GCACAGGATGAGTTATACTTTTAACGGATAT-GG-CTTGTTTATGTCGGCAGAGCTTGAG 411
|||||||||||| | ||| |||| | | || || | | | | | || | |||||| |||
Sbjct 425 GCACAGGATGAG-T-TACATTTATC-AAGATGGGACATATGTGTCTC-G-AGAGCTCGAG 479
Query 412 AAGATCATTA-GAAAGTTACATAATGTAGTGGGAAATGCAGTTACTGATAACAGATTCAT 470
||| |||||| |||| | |||| ||| |||||||| || ||||| |||||||||||| |
Sbjct 480 AAGGTCATTAGGAAA-CTGCATAGTGTTGTGGGAAACGCTGTTACAGATAACAGATTCGT 538
Query 471 AATCTTTGGAGCTGGAGCCACACAATTGCTTGCAGCTTCTGTTCATG-CCTTGTCTCAAA 529
|||||||||| ||||| ||||||||||||| ||||| |||| |||| || ||||| |
Sbjct 539 AATCTTTGGATCTGGAACCACACAATTGCTGGCAGCAGCTGTACATGTCC-TGTCTTTGA 597
Query 530 CAAA-T--TCATTATC-T--CCTTCAAGACTTGTGACTTCTGTTCCATACTACAATTTGT 583
|||| | |||||||| | ||| |||| ||| |||||||| ||||||||||| | |||
Sbjct 598 CAAACTCATCATTATCATCACCTGCAAGGCTTTTGACTTCTATTCCATACTACGCTATGT 657
Query 584 ACAAACAACAAGCAGATTTCTTTAATTCTACCA-ATCTCAAGTTTGAAGGAGATGCGTCT 642
| || | ||||| || |||||| |||| | || ||||||||||||||||||||||||||
Sbjct 658 ATAAGGACCAAGCGGAGTTCTTTGATTC-AGCACATCTCAAGTTTGAAGGAGATGCGTCT 716
Query 643 GCGTGGAAG-AGGAGC-GAGCGCAATGATGATATTAAACAAGTTATAGAGATAGTGACAT 700
||||||||| | |||| || ||||||||| ||| | ||||||||||||| |||| ||||
Sbjct 717 GCGTGGAAGCA-GAGCGGA-CGCAATGATAATACCACACAAGTTATAGAGGTAGTAACAT 774
Query 701 CTCCGAATAATCCAGATGGGAAGCTGAAAAGAGCGGTTCTT-GATGGTCCTAATGTG-AA 758
|||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 775 CTCCAAATAATCCAGATGGGAAATTGAAAAGAGCGGTT-TTAGATGGTCCTAATGTGAAA 833
Query 759 ATACATTCATGATTATGCTTACTACTGGCCTTATTTTTCACCTATTACACGTCAAGCTGA 818
||| | ||||||| |||||| |||||||||||||| |||||||||||| || || |||
Sbjct 834 ATA-GTGCATGATTTTGCTTATTACTGGCCTTATTTCACACCTATTACACATCCAGTTGA 892
Query 819 TGAAGATTTGAGCTTGTTCAGTCTCTCCAAGACTACAGGTCATGCTGGCTCAAGATTCGG 878
|||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 893 TGAAAATTTGAGCTTGTTCAGTCTCTCAAAGGCTACAGGTCATGCTGGCTCAAGATTCGG 952
Query 879 CTGGGCATTAGTAAAAGAGAAAACTGTTTATGAAAAAATGAAAATATATATAAGTCTAAG 938
|||| ||| ||||| || ||| || |||||||||||||| | | ||||||| || |||
Sbjct 953 GTGGGGATTGGTAAAGGACAAAGCTATTTATGAAAAAATGGACAGATATATACGTTTAAC 1012
Query 939 TAGTATGGGAGTTT-CAAGAGACACACAGCTTCGTGCTT-TGCAGTTGCTTAAAGTAGTG 996
|||||||||||||| ||| ||| |||||||||| || || | |||||||| ||||||||
Sbjct 1013 TAGTATGGGAGTTTCCAA-AGAAACACAGCTTCATG-TTCTTCAGTTGCTCAAAGTAGT- 1069
Query 997 A-TTGGTGATGGAGGCAATGAAATATTCCGTTTTGGTTATGGAACCT-TGaaaaaaaGAT 1054
| |||| ||| ||||| |||| |||||| |||||| ||||||| || |||| |||||||
Sbjct 1070 AGTTGGCGATAGAGGCGATGATATATTCAATTTTGGCTATGGAA-CTCTGAAGAAAAGAT 1128
Query 1055 GGGAGATTTTGAACAAGATTTTTTCCATGTCTACGCGTTTTTCGCTCGAAACTATCAAAC 1114
||||||| |||||||||| || ||||| || |||||||| |||||| | |||||||| |
Sbjct 1129 GGGAGATACTGAACAAGATCTTGTCCATTTCCACGCGTTTCTCGCTCCAGACTATCAACC 1188
Query 1115 CTGAGTATTGCAACTATTTCAAGAAAGTTAGAGAGTTTACTCCTTCTTATGCATGGGTGA 1174
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1189 CTGAGTACTGCAACTATTTCAAGAAAGTCAGAGAGTTTACTCCTTCTTATGCATGGGTGA 1248
Query 1175 AGTGTGAGAGACCAGAAGACACAGACTGCTATGAGATTTTCAAAGCGGCGAAGATAACAG 1234
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 1249 AGTGTGAGAGACCAGAAGATACAAACTGCTATGAGATTTTCAGAGCGGCGAAGATAACAG 1308
Query 1235 GACGTAATGGGGAAA-TGTTTGGATCGGATGAAAGGTTTGTGCGGCTAAGTCTCATCAGA 1293
|||| ||||| || |||||||||| || ||||||||||| || | ||||||||||||
Sbjct 1309 GACGCAATGGC-AATGTGTTTGGATCAGAAGAAAGGTTTGTTCGATTGAGTCTCATCAGA 1367
Query 1294 TCACAAGACGACTTTGATCAGCTTATTGCA-ATGTTGAAGAAGTTTGTCTCCAAGGAAGC 1352
|||||||| ||||||||||||||||||| | |||||||||||||| |||||| |||||||
Sbjct 1368 TCACAAGATGACTTTGATCAGCTTATTG-ATATGTTGAAGAAGTTAGTCTCCGAGGAAGC 1426
Query 1353 TGTAGTTGTTGACTCCATCTGA 1374
|||| | |||||||||||||
Sbjct 1427 CGTAGGAGCTGACTCCATCTGA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5