BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G34047.2

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922508 jgi|Araly1|922508|scaffold_103789.1                        383    7e-106
  Ahg913230 jgi|Araly1|913230|Al_scaffold_0001_3484                    350    7e-96 


> Ahg922508 jgi|Araly1|922508|scaffold_103789.1
Length=292

 Score =  383 bits (207),  Expect = 7e-106
 Identities = 246/264 (93%), Gaps = 5/264 (2%)
 Strand=Plus/Plus

Query  59   aaagcgaaaacaaaagaaatggcaaagaaCCTCAACACTGTCAGCTTTACCGTTCTCTTG  118
            ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct  3    AAAGCGAAAACAAAAGAAATGGCAAAGAACCTCAACACTGTCAGCGTTACTGCTCTCTTG  62

Query  119  CTTGTCCTCTTGATGGCTTCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTC  178
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   CTTGTCCTATTGATGGCTTCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTC  122

Query  179  TTAGGCGAGTGTGGGGCGGTCCCGTTCCCAGGTACAAATGCTGATTGCACAAGCTGTTGC  238
            ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct  123  TTAGGCGAGTGTGGGGCGGTCCCGTTCACAGGTTCAAATGCTGATTGCAAAAGCTGTTGC  182

Query  239  GTGGGGAATTTCGGGTCTGCAGT-GT--GTGCTGGACGTGTTGAAG-TCGAGGGAGGCGT  294
            | ||| || ||||| |||||||  ||  |||||||||||||||||| | |||||||||||
Sbjct  183  GAGGGAAAATTCGGATCTGCAGCAGTATGTGCTGGACGTGTTGAAGCT-GAGGGAGGCGT  241

Query  295  GAAACACTGCCATTGCTACGGAAC  318
            ||| ||||||||||||||||||||
Sbjct  242  GAATCACTGCCATTGCTACGGAAC  265


> Ahg913230 jgi|Araly1|913230|Al_scaffold_0001_3484
Length=252

 Score =  350 bits (189),  Expect = 7e-96
 Identities = 228/246 (93%), Gaps = 5/246 (2%)
 Strand=Plus/Plus

Query  77   atggcaaagaaCCTCAACACTGTCAGCTTTACCGTTCTCTTGCTTGTCCTCTTGATGGCT  136
            ||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||
Sbjct  1    ATGGCAAAGAACCTCAACACTGTCAGCGTTACTGCTCTCTTGCTTGTCCTATTGATGGCT  60

Query  137  TCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTCTTAGGCGAGTGTGGGGCG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTCTTAGGCGAGTGTGGGGCG  120

Query  197  GTCCCGTTCCCAGGTACAAATGCTGATTGCACAAGCTGTTGCGTGGGGAATTTCGGGTCT  256
            ||||||||| ||||| ||||||||||||||| ||||||||||| ||| || ||||| |||
Sbjct  121  GTCCCGTTCACAGGTTCAAATGCTGATTGCAAAAGCTGTTGCGAGGGAAAATTCGGATCT  180

Query  257  GCAGT-GT--GTGCTGGACGTGTTGAAG-TCGAGGGAGGCGTGAAACACTGCCATTGCTA  312
            ||||  ||  |||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct  181  GCAGCAGTATGTGCTGGACGTGTTGAAGCT-GAGGGAGGCGTGAATCACTGCCATTGCTA  239

Query  313  CGGAAC  318
            ||||||
Sbjct  240  CGGAAC  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18238371542


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5