BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G34050.1

Length=1722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg336471 jgi|Araly1|336471|fgenesh1_pg.C_scaffold_1003036           627    1e-178


> Ahg336471 jgi|Araly1|336471|fgenesh1_pg.C_scaffold_1003036
Length=891

 Score =  627 bits (339),  Expect = 1e-178
 Identities = 470/533 (88%), Gaps = 10/533 (2%)
 Strand=Plus/Plus

Query  1090  AACA-TGGGAGTATTATCTGAGTATAAGAAGATGCAGATATTTGAAACGCCTTCAAAG-A  1147
             |||| ||||| ||  ||||||  || | |||||||| || |||||| | || || ||| |
Sbjct  244   AACATTGGGAATA-CATCTGA--AT-ATAAGATGCAAATGTTTGAAGCACC-TCCAAGCA  298

Query  1148  GGGAAAGTAAAATGCATGCAGAAGCATTGCTGAACGCAAGGAACACAATCACAATAGTTG  1207
             | |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||||||||
Sbjct  299   GCGAAAGTAAGATGCATGCAGAAGCATTACAGAACGCAAGAAACACGATAACAATAGTTG  358

Query  1208  CAGTTTTGATTGCCTCGGTTGCCTTCACCTGCGGTATAAATCCTCCTGGTGGTGTCTATC  1267
             ||||||||||||||||||| |||||||| || || |||||||| || || ||||||||||
Sbjct  359   CAGTTTTGATTGCCTCGGTCGCCTTCACTTGTGGCATAAATCCCCCCGGCGGTGTCTATC  418

Query  1268  AAGAAGGACCCTACAAAGGAAAATCAACTGC-GGGAAGAACGTTGGCCTTCCAAGTGTTT  1326
             |||| || || |||||||| ||||||||||| ||| | |||||| |||||| || | |||
Sbjct  419   AAGATGGTCCTTACAAAGGTAAATCAACTGCAGGG-ACAACGTTAGCCTTCAAAATCTTT  477

Query  1327  TCTATAAGCAACAACATCGCATTGTTCACATCCCTTTGCATTGTAATCCTTCTTGTCAGC  1386
             || |||||||||||||||||||||||||||||||| |||||||| || ||||| || |||
Sbjct  478   TCCATAAGCAACAACATCGCATTGTTCACATCCCTATGCATTGTGATTCTTCTAGTAAGC  537

Query  1387  ATTATACCTTACAGGACGAGACCACTCAAGAACTTCTTAAAACTAACACATAGGATACTT  1446
             |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct  538   ATTATACCTTACAGGACGAGGCCACTCATGAACTTCTTAAAACTAACACATAGGATGCTT  597

Query  1447  TGGGTGGCTGTGGCATCCATGGCACTCGCTTATGTTTCCGCAGCTTCCATAATCATACCG  1506
             ||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct  598   TGGGTAGCTGTGGCATCCATGGCACTCGCTTATGTTGCTGCAGCTTCCACAATCATACCG  657

Query  1507  CATGTCGAAGGAAAAAGATGGTTGTTCACAACTGTTCTTTCTATCTCTACCTTGATGCTC  1566
             ||| ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| 
Sbjct  658   CATATCGAAGGAACAAGATGGTTCTTCACAACTGTTCTTTCTATCTCTACCGTGATGCTG  717

Query  1567  GGAGGTCTGTTTGCGTTTATGACCTATAAAGTCATCAGACACTGGTTGAAGAA  1619
             |||||| ||||||||||||||||||||||| |  ||||||||||||||| |||
Sbjct  718   GGAGGTTTGTTTGCGTTTATGACCTATAAACTGTTCAGACACTGGTTGA-GAA  769



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64601055520


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5