BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34065.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313922 jgi|Araly1|313922|fgenesh1_pm.C_scaffold_1002702 1502 0.0
> Ahg313922 jgi|Araly1|313922|fgenesh1_pm.C_scaffold_1002702
Length=966
Score = 1502 bits (813), Expect = 0.0
Identities = 915/966 (95%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 73 ATGGATAGTGACATTGTTTCCAGTAGCATAGATCGATCTCAGACAGCAATGCCTGATGCT 132
||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| |
Sbjct 1 ATGGATAGTGACATTGTTTCCAGTAGCGTTGATCAATCTCGGACAGCAATGCCTGATTCA 60
Query 133 TTAGCATTCAAGAGTATCAATGATCCTATCAAGAACCAGATCAATAGTTGTGCTGCAATC 192
|| ||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 61 TTGGCATTTAAGAGTATCAATGATCCTATCAAGAACAAGATCAATGGTTGTGCTACAATC 120
Query 193 TGTGTTAAGCAAGATGATCCATGCCATTTCTTGCGTGTCCTTTATGAGTCTCTGATAACA 252
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGTTAAACAAGATGATCCATGCCATTTCTTGCGTGTCCTTTATGAGTCTCTGATAACA 180
Query 253 GGAGGGTTAGCTGGTGTTGTGGTGGAAGCTGCTTTGTATCCAATTGATACAATCAAAACT 312
|||||||| |||||||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 181 GGAGGGTTGGCTGGTGTTGTGGTGGAAGCTGCTCTATACCCAATTGATACGATCAAAACT 240
Query 313 CGAATACAGGTAGCTCGGGATGGTGGAAAGATAATATGGAAGGGATTATACTCTGGTCTT 372
||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 241 CGAGTACAGGTAGCTCGGGATGGAGGAAAGATAATATGGAAGGGACTATACTCTGGTCTT 300
Query 373 GGTGGAAATCTTGTCGGTGTCTTACCTGCTTCGGCTCTATTTTTTGGTGTATATGAACCA 432
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 301 GGTGGAAATCTTGTCGGTGTCTTACCTGCGTCGGCTCTATTTTTCGGTGTATATGAACCA 360
Query 433 ACCAAACAGAAGCTGCTAAAGGTTTTACCAGATAATCTTAGTGCGGTTGCACATTTGGCT 492
||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 361 ACCAAACAGAAGCTGCTGAAGGTTTTGCCTGAGAATCTTAGTGCGGTTGCACATTTGGCT 420
Query 493 GCAGGTGCGTTAGGAGGTGCTGTTTCATCTATTGTTCGGGTACCAACAGAAGTTGTGAAA 552
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 421 GCAGGTGCTTTAGGAGGTGCTGTTTCATCTATTGTTCGAGTACCTACAGAAGTTGTCAAA 480
Query 553 CAGCGGATGCAGACTGGTCAATTTGTTTCGGCCCCTGACGCTGTTCGCCTTATTATAGCC 612
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 481 CAGCGGATGCAAACTGGTCAATTTGCTTCGGCCCCTGATGCTGTTCGCCTTATTATAGCC 540
Query 613 AAGGAGGGCTTTGGAGGCATGTATGCGGGTTATGGATCCTTCTTATTGCGAGATTTGCCT 672
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 541 AAGGAGGGCTTTGGAGGCATGTATGCGGGTTATGGATCTTTCCTGTTGCGAGATTTGCCT 600
Query 673 TTTGACGCGCTCCAGTTTTGTGTTTATGAGCAATTACGAATTGGATACAAGTTGGCTGCA 732
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 601 TTTGATGCGCTCCAGTTTTGTGTATATGAGCAATTACGGATTGGATACAAGTTGGCTGCG 660
Query 733 AGAAGAGATCTAAATGATCCAGAGAATGCGATGATTGGTGCTTTTGCTGGTGCTGTCACT 792
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 661 AGAAGAGATCTAAATGATCCAGAGAATGCAATGCTTGGTGCTTTTGCTGGTGCTGTCACT 720
Query 793 GGAGTTTTGACCACTCCTCTTGATGTTATCAAAACCAGATTAATGGTTCAGGGCTCAGGA 852
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 721 GGAGTTTTGACCACTCCTCTAGACGTTATCAAAACCAGATTAATGGTTCAGGGCGCAGGA 780
Query 853 ACTCAGTATAAAGGAGTTTCGGATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCA 912
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 781 ACTCAGTATAAAGGAGTCTCAGATTGCATTAAGACGATAATAAGAGAAGAAGGGTCATCA 840
Query 913 GCTTTGTGGAAGGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTC 972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GCTTTGTGGAAGGGAATGGGTCCAAGGGTATTATGGATAGGTATTGGAGGTTCAATTTTC 900
Query 973 TTTGGTGTTTTGGAAAAGACAAAGCAGATTCTTTCAGAGAGAAGCCAAAAGAGTCACAAT 1032
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 TTTGGTGTATTGGAAAAGACAAAGCAGATTCTTTCAGAAAGAAGCCAAAAGAGTCACAAT 960
Query 1033 GCTTAA 1038
||||||
Sbjct 961 GCTTAA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5