BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34100.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913238 jgi|Araly1|913238|Al_scaffold_0001_3492 776 0.0
> Ahg913238 jgi|Araly1|913238|Al_scaffold_0001_3492
Length=1059
Score = 776 bits (420), Expect = 0.0
Identities = 488/522 (93%), Gaps = 0/522 (0%)
Strand=Plus/Plus
Query 1 GATTTGTTGTTCAACAGAAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 60
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATCTGTTGTTCAATAGGAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 282
Query 61 CACGGTCCTAAGCTTCTTGGCCGGTTTTCTGGCGGTCGAATCGAGGAGTTTATTAATGCC 120
||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||
Sbjct 283 CACGGTCCTAAGCTTCTTGGCCGGTTTGCTGGCGGTAGAATTGAGGAATTTATTAATGCC 342
Query 121 CGGACGTTATCAGCAGCAAATCTACGTGACGCGGAAGTACCTACTCGTGTTGCGGCTAAG 180
||||| ||||| || || ||||||||||| ||||| | || |||||||||| || |||
Sbjct 343 CGGACTTTATCGGCGGCGGATCTACGTGACATGGAAGCATCTGCTCGTGTTGCAGCCAAG 402
Query 181 CTAAGAGAGTTTCATGGTATCAACATCCCTGGTGATAGAAATGTGCTCATTTGGGATAGG 240
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 403 CTAAGAGAGTTTCATGGTATAAATATCCCTGGTGATAAAAATGTGCTCATTTGGGATAGG 462
Query 241 ATGAGGAATTGGCTTAGACAAGCCAAAAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 463 ATGAGGAATTGGCTTAGACAAGCCAAGAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 522
Query 301 GGTCTAGACAAGATTGAAGATGAGATATACTTGCTGGAACATGAGCTGCAGGATAAGTGT 360
||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 523 GGTCTAGACAAGATTGAAGCTGAGATAAACTTACTAGAACATGAGCTGCAGGATAAGTGT 582
Query 361 AAGCAGCAGGAGATAGGGTTTTGTCACAATGATTTGCAATATGGTAACATTATGATTGAT 420
|||||| ||||||| || |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 583 AAGCAGAAGGAGATTGGATTTTGTCACAATGATTTGCAGTATGGTAACATTATGCTTGAT 642
Query 421 GAAGATACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCAGTTGCA 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 643 GAAGACACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCGGTTGCA 702
Query 481 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 744
Score = 392 bits (212), Expect = 2e-108
Identities = 254/275 (92%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 530 CAGGAGAAGAGGAACGAAGGAGGTTCATCCATAACTACCTCAGCTCTTCAGGCGAAGAAC 589
||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 785 CAGGAGAAGAGGAACGAAGTCGATTCATCCATAACTATCTCAGCTCTTCAGGCGAGGAAC 844
Query 590 CAAAAGAAGATGACATAAAACAGCTCTTGAAGGATGCTGAGAAGTACACATTAGCAAGCC 649
|||| ||||| |||||||||||||||||| | ||| ||||||||||||| ||||||| |
Sbjct 845 CAAAGGAAGAAGACATAAAACAGCTCTTGGATAATGTTGAGAAGTACACACTAGCAAGTC 904
Query 650 ATCTGTTTTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGACTTCGATT 709
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 905 ATCTCTTCTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGAGTTCGATT 964
Query 710 ACGCCGAGTACTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAC 769
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 ACGCCGAGTATTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAT 1024
Query 770 TCTTCTCCCAAATGTATATTTCAAACACCAAATGA 804
||| ||| ||||||||| |||||||||||||||||
Sbjct 1025 TCTCCTCTCAAATGTATGTTTCAAACACCAAATGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5