BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34110.1
Length=3651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473563 jgi|Araly1|473563|fgenesh2_kg.1__3517__AT1G34110.1 5055 0.0
> Ahg473563 jgi|Araly1|473563|fgenesh2_kg.1__3517__AT1G34110.1
Length=3290
Score = 5055 bits (2737), Expect = 0.0
Identities = 3132/3320 (94%), Gaps = 38/3320 (1%)
Strand=Plus/Plus
Query 335 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTCAAGAGA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTGAAGAGA 60
Query 395 CCATCACCATCACTCTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 454
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATCACCATCACTTTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 120
Query 455 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 180
Query 515 AACCTGTCTTCAATCCCTGacctctcttctctctcctctctacagttcctaaacctctcc 574
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AACCTGTCTTCAATCCCTGACCTCTCTTCTCTCTCCTCTCTGCAGTTCCTAAACCTCTCC 240
Query 575 tccaccaacctctctggcccaatccctcctTCATTTGGAAAACTTACCCACCTAAGGCTT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCACCAACCTCTCTGGCCCAATCCCTCCTTCATTTGGAAAACTTACCCACCTAAGGCTT 300
Query 635 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCGCCTCTCT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCACCTCTCT 360
Query 695 ACTCTCCAGTTCCTTATATTGAACGCCAACAAGCTCTCAGGTTCAATCCCTTCACAGATT 754
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 361 TCTCTCCAGTTCCTTATCTTGAACGCCAACAAGCTCTCTGGCTCAATCCCTTCACAGATT 420
Query 755 TCGAATCTATTTGCCTTGCAAGTGCTTTGTCTTCAAGACAATCTGTTGAATGGTTCGATT 814
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCAAATCTATCTGCCTTGCAAGTGCTTTGTCTTCAGGACAATCTGTTGAATGGTTCGATT 480
Query 815 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGTGGTAACACTAAT 874
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 481 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGAGGTAACCCTAAT 540
Query 875 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 600
Query 935 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 660
Query 995 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 720
Query 1055 TCAGAGCTCAGGAACTTGTATTTGCACATGAACAAGCTCACTGGATCAATCCCAAAGGAA 1114
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TCAGAGCTCAGAAACTTGTATTTGCACATGAACAAGCTCACTGGATCCATCCCAAAGGAA 780
Query 1115 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTATGGGGGAATTCTTTATCTGGGGTC 1174
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTTTGGGGGAATTCTTTATCTGGGGTC 840
Query 1175 ATCCCACCAGAGATTTCCAACTGTTCTTCCCTCGTGGTGTTTGATGTTTCAGCTAACGAT 1234
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 841 ATCCCACCAGAGATCTCCAACTGTTCTTCCCTTGTGGTGTTTGATGTTTCGGCCAACGAT 900
Query 1235 CTAACTGGCGATATTCCTGGAGATTTGGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 1294
|| || || || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 CTGACCGGTGAGATTCCTGGAGATTTAGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 960
Query 1295 TCTGATAATATGTTTACCGGTCAGATTCCTTGGGAGTTAAGCAACTGTTCCAGCCTCATT 1354
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 961 TCTGATAATATGTTCACCGGTCAGATTCCTTGGGAATTAAGTAACTGTTCCAGCCTCATT 1020
Query 1355 GCTCTTCAGCTGGACAAGAACAAGTTATCAGGCTCCATACCCTCACAAATTGGAAACCTC 1414
||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1021 GCTCTGCAGCTGGATAAGAACAAGTTATCAGGCTCCATACCATCCCAAATCGGAAACCTC 1080
Query 1415 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCAATTTCAGGAACAATTCCGTCTTCT 1474
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCTATTTCAGGAACAATTCCGTCTTCT 1140
Query 1475 TTTGGCAACTGCACAGACCTAGTGGCCCTGGACCTCTCTAGGAACAAGCTAACAGGAAGA 1534
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1141 TTTGGCAACTGCACAGACCTAGTTGCCCTTGACCTCTCTAGGAACAAGCTAACAGGAAGA 1200
Query 1535 ATACCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTCCTTCTAGGGAACTCC 1594
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1201 ATCCCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTGCTTCTAGGAAACTCC 1260
Query 1595 TTATCCGGTGGATTACCAAAGAGCGTAGCAAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1654
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1261 TTATCCGGTGGATTACCAAAGAGCGTATCGAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1320
Query 1655 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1380
Query 1715 TTTCTTGATCTCTACATGAACCATTTCTCCGGTGGGCTTCCTTACGAGATCTCTAACATC 1774
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1381 TTTCTTGATCTCTACATGAACCATTTCTCTGGTGGGCTTCCTTATGAGATCTCTAACATC 1440
Query 1775 ACTGTCCTTGAGCTCTTAGATGTCCACAACAACTACATCACCGGAGATATTCCTGCTCAG 1834
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 1441 ACTGTCCTTGAGCTCTTAGATGTGCACAACAACTACATAACTGGAGATATTCCTGCTAAG 1500
Query 1835 TTGGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACAGGAAAC 1894
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1501 TTAGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACCGGAAAC 1560
Query 1895 ATACCGCTGAGTTTTGGGAACCTAAGCTACTTAAACAAGCTGATCCTCAACAACAATCTC 1954
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1561 ATACCGCTGAGTTTTGGTAACTTAAGTTACTTAAACAAGCTGATCCTCAACAACAATCTC 1620
Query 1955 CTCACTGGTCAAATCCCAAAATCTATCAAGAATCTACAAAAGCTTACACTTCTTGATCTT 2014
|||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1621 CTCACTGGCCAAATCCCTAAATCCATCAAGAATCTGCAAAAGCTTACACTTCTTGATCTT 1680
Query 2015 AGCTACAACAGCTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTCACAAGCTTAACT 2074
|||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1681 AGCTTCAACAGTTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTAACAAGCTTGACT 1740
Query 2075 ATAAACCTCGACTTAAGCTACAACACCTTCACTGGAAACATCCCGGAAACCTTCTCCGAC 2134
||||| || || |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1741 ATAAATCTGGATTTAAGCTACAACACCTTCACTGGAGCCATCCCGGAAACCTTCTCCGGC 1800
Query 2135 CTCACACAGCTACAATCACTCGACCTCTCAAGCAAC-TCGCTACACGGCGACATCAAAGT 2193
|||||||||||||||||||| ||||||||| | || | ||| |||||||||||||||||
Sbjct 1801 CTCACACAGCTACAATCACTGGACCTCTCACGAAATAT-GCTTCACGGCGACATCAAAGT 1859
Query 2194 CCTCGGTTCACTCACAAGCCTAGCTTCACTAAACATCTCCTGCAACAACTTCTCAGGTCC 2253
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 1860 CCTCGGTTCACTCACAAGCCTAGCGTCACTCAACATATCCTGCAACAACTTCTCTGGTCC 1919
Query 2254 AATCCCATCAACACCATTCTTCAAAACAATCTCCACAACATCATACCTCCAAAACACAAA 2313
||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1920 AATCCCAGCTACACCGTTCTTCAAAACAATCTCCGCAACTTCATACCTCCAAAACACAAA 1979
Query 2314 CCTCTGCCATTCACTAGACGGCATCACTTGCTCATCACACACCGGACAAAACAACGGAGT 2373
||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1980 CCTCTGCCATTCACTCGACGGCATTACTTGCTCATCACGCAATAGACAAAACAACGGAGT 2039
Query 2374 AAAATCCCCAAAGATCGTAGCTTTAACCGCAGTAATCCTCGCATCAATCACAATCGCAAT 2433
||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||
Sbjct 2040 CAAATCCCCAAAGATCGTAGCTTTAATCGCGGTAATCCTTGCTTCAATCACAATCGCCAT 2099
Query 2434 CCTCGCAGCCTGGCTTCTCATCTTACGAAACAACCACCTCTACAAAACATCTCAAAACTC 2493
||||||||||||||||||| ||||||||||||| |||| |||||| || ||||||| ||
Sbjct 2100 CCTCGCAGCCTGGCTTCTCCTCTTACGAAACAATCACCGCTACAA--CA-CTCAAAAATC 2156
Query 2494 --C-TCTTCCTCTCCATCAACAGCAGAAGATTTCTCATACCCGTGGACATTCATACCATT 2550
| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2157 ATCGTCTTCTTCACCATCAACAGCAGAAGATTTCTCATACCCATGGACATTCATACCCTT 2216
Query 2551 CCAAAAACTCGGTATCACCGTCAACAACATCGTCACTTCCTTAACCGACGAAAACGTAAT 2610
||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||| ||
Sbjct 2217 CCAAAAACTCGGTATCAGCGTCAACAACATCGTCAATTGCTTAACAGACGAAAACGTGAT 2276
Query 2611 CGGAAAAGGATGTTCAGGAATCGTATACAAAGCCGAAATCCCCAACGGAGACATCGTAGC 2670
||| || ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||
Sbjct 2277 CGGCAAGGGATGTTCAGGGATCGTTTACAAAGCCGAAATACCAAACGGAGAGATCGTGGC 2336
Query 2671 AGTGAAGAAACTCTGGAAAACTAAAGACAACAACGAAG-A--AGGAGAATCAACAATAGA 2727
||||||||| || |||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 2337 AGTGAAGAAGCTTTGGAAAACTAAAGACAACGACGAAGGAGGAGGAGAATCAACAATAGA 2396
Query 2728 TTCATTCGCTGCAGAGATTCAGATTCTCGGTAACATCAGACACAGAAACATAGTGAAGCT 2787
||||||||| || |||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 2397 TTCATTCGCAGCGGAGATTCAGATTCTTGGTAGCATCAGACACAGAAACATTGTGAAGCT 2456
Query 2788 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTTCTATACAATTACTTCCCTAACGG 2847
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 2457 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTGCTATACAATTATTTCCCTAATGG 2516
Query 2848 GAATCTACAACAGTTGTTGCAAGGAAATCGAAACTTGGATTGGGAAACACGTTACAAGAT 2907
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2517 GAATCTTCAACAGTTGTTGCAAGGAAATCGGAACTTGGATTGGGAAACACGTTACAAGAT 2576
Query 2908 TGCGATTGGAGCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2967
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 TGCTATTGGATCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2636
Query 2968 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 3027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 2696
Query 3028 TGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAACGCCATGTCTCG 3087
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2697 GGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAATGCTATGTCTCG 2756
Query 3088 TGTTGCTGGTTCTTATGGATACATCGCACCAGAATACGGATACACGATGAATATAACAGA 3147
|||||||| | |||| | || ||| | | |||||| ||||||||
Sbjct 2757 TGTTGCTG------A---ATAC---G-----GA-TAC--A--C--GATGAACATAACAGA 2792
Query 3148 GAAGAGTGACGTGTACAGCTACGGCGTCGTTTTATTAGAGATTCTAAGTGGCCGGAGCGC 3207
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2793 GAAGAGTGACGTATACAGCTACGGCGTCGTTTTATTAGAGATTCTTAGTGGCCGGAGCGC 2852
Query 3208 CGTGGAGCCACAAATCGGCGACGGGCTTCACATAGTGGAATGGGTGAAGAAGAAGATGGG 3267
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2853 CGTGGAGCCACAAATCGGCGACGGACTTCACATAGTAGAATGGGTGAAGAAGAAGATGGG 2912
Query 3268 AACCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAGGGATTACCAGATCAGAT 3327
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2913 AAGCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAAGGATTACCAGATCAGAT 2972
Query 3328 AGTTCAAGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3387
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2973 AGTTCACGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3032
Query 3388 GGAGAGACCAACGATGAAGGAAGTTGTGACGTTGTTAATGGAGGTTAAGTGTAGTCCTGA 3447
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 3033 GGAGAGACCAACGATGAAAGAAGTTGTGACATTGTTAATGGAGGTTAAGTGTAGTCCTGA 3092
Query 3448 AGAATGGGGTAAAACATCTCAGCCTCTTATCAAGCCTTCTTCTTCATAACCTATGGTGCT 3507
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 3093 AGAATGGGGTAAAACATCTCAGCCTCTTATAAAGCCTTCTTCTTCATAACCAATGGTGAT 3152
Query 3508 TGTGTTT-CTTGTTCTTGttttttttttttAGGTCAAATTTGGTTGAGTGGTTTTGATTT 3566
||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 3153 TGTGTTTTCTTGTTCTTGTTTTTTGATTT-AGGTCAAATTTGGTTGAGAGGTTTTGATTT 3211
Query 3567 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTGAGCTCTTTGGAATCAA 3626
||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 3212 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTCAGAT-TTTGGAATCAT 3270
Query 3627 TTAGAATTGGTTACAACTTT 3646
||||||||||||||||||||
Sbjct 3271 TTAGAATTGGTTACAACTTT 3290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137920644552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5