BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34110.1 Length=3651 Score E Sequences producing significant alignments: (Bits) Value Ahg473563 jgi|Araly1|473563|fgenesh2_kg.1__3517__AT1G34110.1 5055 0.0 > Ahg473563 jgi|Araly1|473563|fgenesh2_kg.1__3517__AT1G34110.1 Length=3290 Score = 5055 bits (2737), Expect = 0.0 Identities = 3132/3320 (94%), Gaps = 38/3320 (1%) Strand=Plus/Plus Query 335 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTCAAGAGA 394 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGCCCAACCCACTCTTTCTCTTTCATCAGATGGCCAAGCTCTTCTCTCTCTGAAGAGA 60 Query 395 CCATCACCATCACTCTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 454 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCATCACCATCACTTTTCTCTTCTTGGGACCCACAAGACCAGACACCATGTTCATGGTAT 120 Query 455 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGCATTACATGTTCTGCAGACAACAGAGTCATCTCTGTCTCTATCCCCGACACTTTCCTT 180 Query 515 AACCTGTCTTCAATCCCTGacctctcttctctctcctctctacagttcctaaacctctcc 574 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 AACCTGTCTTCAATCCCTGACCTCTCTTCTCTCTCCTCTCTGCAGTTCCTAAACCTCTCC 240 Query 575 tccaccaacctctctggcccaatccctcctTCATTTGGAAAACTTACCCACCTAAGGCTT 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCACCAACCTCTCTGGCCCAATCCCTCCTTCATTTGGAAAACTTACCCACCTAAGGCTT 300 Query 635 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCGCCTCTCT 694 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 CTCGACCTTTCTTCAAACTCTCTCTCTGGTCCAATCCCATCAGAGCTTGGTCACCTCTCT 360 Query 695 ACTCTCCAGTTCCTTATATTGAACGCCAACAAGCTCTCAGGTTCAATCCCTTCACAGATT 754 |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 361 TCTCTCCAGTTCCTTATCTTGAACGCCAACAAGCTCTCTGGCTCAATCCCTTCACAGATT 420 Query 755 TCGAATCTATTTGCCTTGCAAGTGCTTTGTCTTCAAGACAATCTGTTGAATGGTTCGATT 814 || ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 TCAAATCTATCTGCCTTGCAAGTGCTTTGTCTTCAGGACAATCTGTTGAATGGTTCGATT 480 Query 815 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGTGGTAACACTAAT 874 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 481 CCTTCAAGTTTTGGCTCTTTGGTCTCTCTTCAGCAGTTCAGACTTGGAGGTAACCCTAAT 540 Query 875 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTCGGAGGTCCTATCCCTGCTCAGCTAGGGTTTCTGAAAAATTTGACAACTCTAGGGTTT 600 Query 935 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCAGCAAGTGGTTTGTCAGGTTCAATCCCTTCCACATTTGGGAATTTGGTAAATTTGCAA 660 Query 995 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACTTTGGCTCTGTATGACACTGAGATCTCTGGTACCATTCCTCCTCAACTGGGTTTGTGC 720 Query 1055 TCAGAGCTCAGGAACTTGTATTTGCACATGAACAAGCTCACTGGATCAATCCCAAAGGAA 1114 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 721 TCAGAGCTCAGAAACTTGTATTTGCACATGAACAAGCTCACTGGATCCATCCCAAAGGAA 780 Query 1115 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTATGGGGGAATTCTTTATCTGGGGTC 1174 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 781 CTGGGTAAGCTCCAGAAGATCACTAGCTTGCTTCTTTGGGGGAATTCTTTATCTGGGGTC 840 Query 1175 ATCCCACCAGAGATTTCCAACTGTTCTTCCCTCGTGGTGTTTGATGTTTCAGCTAACGAT 1234 |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 841 ATCCCACCAGAGATCTCCAACTGTTCTTCCCTTGTGGTGTTTGATGTTTCGGCCAACGAT 900 Query 1235 CTAACTGGCGATATTCCTGGAGATTTGGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 1294 || || || || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 901 CTGACCGGTGAGATTCCTGGAGATTTAGGGAAGCTTGTTTGGTTGGAGCAGCTTCAGTTG 960 Query 1295 TCTGATAATATGTTTACCGGTCAGATTCCTTGGGAGTTAAGCAACTGTTCCAGCCTCATT 1354 |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 961 TCTGATAATATGTTCACCGGTCAGATTCCTTGGGAATTAAGTAACTGTTCCAGCCTCATT 1020 Query 1355 GCTCTTCAGCTGGACAAGAACAAGTTATCAGGCTCCATACCCTCACAAATTGGAAACCTC 1414 ||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 1021 GCTCTGCAGCTGGATAAGAACAAGTTATCAGGCTCCATACCATCCCAAATCGGAAACCTC 1080 Query 1415 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCAATTTCAGGAACAATTCCGTCTTCT 1474 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1081 AAGTCTCTGCAGAGCTTTTTCTTGTGGGAGAACTCTATTTCAGGAACAATTCCGTCTTCT 1140 Query 1475 TTTGGCAACTGCACAGACCTAGTGGCCCTGGACCTCTCTAGGAACAAGCTAACAGGAAGA 1534 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1141 TTTGGCAACTGCACAGACCTAGTTGCCCTTGACCTCTCTAGGAACAAGCTAACAGGAAGA 1200 Query 1535 ATACCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTCCTTCTAGGGAACTCC 1594 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1201 ATCCCAGAAGAGCTCTTCAGTTTAAAGAGGCTCAGCAAACTTCTGCTTCTAGGAAACTCC 1260 Query 1595 TTATCCGGTGGATTACCAAAGAGCGTAGCAAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1654 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1261 TTATCCGGTGGATTACCAAAGAGCGTATCGAAATGCCAGTCGCTTGTGAGGCTAAGAGTC 1320 Query 1655 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 GGAGAGAACCAACTCTCAGGTCAAATCCCTAAAGAGATAGGCGAGTTACAGAACCTGGTG 1380 Query 1715 TTTCTTGATCTCTACATGAACCATTTCTCCGGTGGGCTTCCTTACGAGATCTCTAACATC 1774 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1381 TTTCTTGATCTCTACATGAACCATTTCTCTGGTGGGCTTCCTTATGAGATCTCTAACATC 1440 Query 1775 ACTGTCCTTGAGCTCTTAGATGTCCACAACAACTACATCACCGGAGATATTCCTGCTCAG 1834 ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 1441 ACTGTCCTTGAGCTCTTAGATGTGCACAACAACTACATAACTGGAGATATTCCTGCTAAG 1500 Query 1835 TTGGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACAGGAAAC 1894 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1501 TTAGGGAACCTTGTGAATCTAGAGCAGCTTGATTTGAGCAGAAACAGCTTCACCGGAAAC 1560 Query 1895 ATACCGCTGAGTTTTGGGAACCTAAGCTACTTAAACAAGCTGATCCTCAACAACAATCTC 1954 ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1561 ATACCGCTGAGTTTTGGTAACTTAAGTTACTTAAACAAGCTGATCCTCAACAACAATCTC 1620 Query 1955 CTCACTGGTCAAATCCCAAAATCTATCAAGAATCTACAAAAGCTTACACTTCTTGATCTT 2014 |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1621 CTCACTGGCCAAATCCCTAAATCCATCAAGAATCTGCAAAAGCTTACACTTCTTGATCTT 1680 Query 2015 AGCTACAACAGCTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTCACAAGCTTAACT 2074 |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1681 AGCTTCAACAGTTTATCCGGTGAAATCCCACAAGAACTCGGTCAAGTAACAAGCTTGACT 1740 Query 2075 ATAAACCTCGACTTAAGCTACAACACCTTCACTGGAAACATCCCGGAAACCTTCTCCGAC 2134 ||||| || || |||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1741 ATAAATCTGGATTTAAGCTACAACACCTTCACTGGAGCCATCCCGGAAACCTTCTCCGGC 1800 Query 2135 CTCACACAGCTACAATCACTCGACCTCTCAAGCAAC-TCGCTACACGGCGACATCAAAGT 2193 |||||||||||||||||||| ||||||||| | || | ||| ||||||||||||||||| Sbjct 1801 CTCACACAGCTACAATCACTGGACCTCTCACGAAATAT-GCTTCACGGCGACATCAAAGT 1859 Query 2194 CCTCGGTTCACTCACAAGCCTAGCTTCACTAAACATCTCCTGCAACAACTTCTCAGGTCC 2253 |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 1860 CCTCGGTTCACTCACAAGCCTAGCGTCACTCAACATATCCTGCAACAACTTCTCTGGTCC 1919 Query 2254 AATCCCATCAACACCATTCTTCAAAACAATCTCCACAACATCATACCTCCAAAACACAAA 2313 ||||||| | ||||| |||||||||||||||||| |||| |||||||||||||||||||| Sbjct 1920 AATCCCAGCTACACCGTTCTTCAAAACAATCTCCGCAACTTCATACCTCCAAAACACAAA 1979 Query 2314 CCTCTGCCATTCACTAGACGGCATCACTTGCTCATCACACACCGGACAAAACAACGGAGT 2373 ||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||| Sbjct 1980 CCTCTGCCATTCACTCGACGGCATTACTTGCTCATCACGCAATAGACAAAACAACGGAGT 2039 Query 2374 AAAATCCCCAAAGATCGTAGCTTTAACCGCAGTAATCCTCGCATCAATCACAATCGCAAT 2433 ||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| || Sbjct 2040 CAAATCCCCAAAGATCGTAGCTTTAATCGCGGTAATCCTTGCTTCAATCACAATCGCCAT 2099 Query 2434 CCTCGCAGCCTGGCTTCTCATCTTACGAAACAACCACCTCTACAAAACATCTCAAAACTC 2493 ||||||||||||||||||| ||||||||||||| |||| |||||| || ||||||| || Sbjct 2100 CCTCGCAGCCTGGCTTCTCCTCTTACGAAACAATCACCGCTACAA--CA-CTCAAAAATC 2156 Query 2494 --C-TCTTCCTCTCCATCAACAGCAGAAGATTTCTCATACCCGTGGACATTCATACCATT 2550 | ||||| || ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 2157 ATCGTCTTCTTCACCATCAACAGCAGAAGATTTCTCATACCCATGGACATTCATACCCTT 2216 Query 2551 CCAAAAACTCGGTATCACCGTCAACAACATCGTCACTTCCTTAACCGACGAAAACGTAAT 2610 ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||||| || Sbjct 2217 CCAAAAACTCGGTATCAGCGTCAACAACATCGTCAATTGCTTAACAGACGAAAACGTGAT 2276 Query 2611 CGGAAAAGGATGTTCAGGAATCGTATACAAAGCCGAAATCCCCAACGGAGACATCGTAGC 2670 ||| || ||||||||||| ||||| |||||||||||||| || |||||||| ||||| || Sbjct 2277 CGGCAAGGGATGTTCAGGGATCGTTTACAAAGCCGAAATACCAAACGGAGAGATCGTGGC 2336 Query 2671 AGTGAAGAAACTCTGGAAAACTAAAGACAACAACGAAG-A--AGGAGAATCAACAATAGA 2727 ||||||||| || |||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 2337 AGTGAAGAAGCTTTGGAAAACTAAAGACAACGACGAAGGAGGAGGAGAATCAACAATAGA 2396 Query 2728 TTCATTCGCTGCAGAGATTCAGATTCTCGGTAACATCAGACACAGAAACATAGTGAAGCT 2787 ||||||||| || |||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct 2397 TTCATTCGCAGCGGAGATTCAGATTCTTGGTAGCATCAGACACAGAAACATTGTGAAGCT 2456 Query 2788 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTTCTATACAATTACTTCCCTAACGG 2847 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 2457 ATTAGGTTACTGTTCGAACAAATCAGTGAAGCTGCTGCTATACAATTATTTCCCTAATGG 2516 Query 2848 GAATCTACAACAGTTGTTGCAAGGAAATCGAAACTTGGATTGGGAAACACGTTACAAGAT 2907 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2517 GAATCTTCAACAGTTGTTGCAAGGAAATCGGAACTTGGATTGGGAAACACGTTACAAGAT 2576 Query 2908 TGCGATTGGAGCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2967 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2577 TGCTATTGGATCTGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCGGCGATTTT 2636 Query 2968 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 3027 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2637 GCATAGAGATGTCAAGTGTAATAATATTCTTCTGGATTCGAAATATGAAGCGATTCTTGC 2696 Query 3028 TGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAACGCCATGTCTCG 3087 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2697 GGATTTTGGACTTGCGAAGCTGATGATGAATTCGCCGAATTATCATAATGCTATGTCTCG 2756 Query 3088 TGTTGCTGGTTCTTATGGATACATCGCACCAGAATACGGATACACGATGAATATAACAGA 3147 |||||||| | |||| | || ||| | | |||||| |||||||| Sbjct 2757 TGTTGCTG------A---ATAC---G-----GA-TAC--A--C--GATGAACATAACAGA 2792 Query 3148 GAAGAGTGACGTGTACAGCTACGGCGTCGTTTTATTAGAGATTCTAAGTGGCCGGAGCGC 3207 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2793 GAAGAGTGACGTATACAGCTACGGCGTCGTTTTATTAGAGATTCTTAGTGGCCGGAGCGC 2852 Query 3208 CGTGGAGCCACAAATCGGCGACGGGCTTCACATAGTGGAATGGGTGAAGAAGAAGATGGG 3267 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2853 CGTGGAGCCACAAATCGGCGACGGACTTCACATAGTAGAATGGGTGAAGAAGAAGATGGG 2912 Query 3268 AACCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAGGGATTACCAGATCAGAT 3327 || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2913 AAGCTTTGAACCAGCTTTATCAGTACTTGACGTGAAGCTTCAAGGATTACCAGATCAGAT 2972 Query 3328 AGTTCAAGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3387 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2973 AGTTCACGAGATGCTTCAGACATTAGGAATCGCCATGTTCTGTGTGAATCCGTCGCCTGT 3032 Query 3388 GGAGAGACCAACGATGAAGGAAGTTGTGACGTTGTTAATGGAGGTTAAGTGTAGTCCTGA 3447 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 3033 GGAGAGACCAACGATGAAAGAAGTTGTGACATTGTTAATGGAGGTTAAGTGTAGTCCTGA 3092 Query 3448 AGAATGGGGTAAAACATCTCAGCCTCTTATCAAGCCTTCTTCTTCATAACCTATGGTGCT 3507 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| | Sbjct 3093 AGAATGGGGTAAAACATCTCAGCCTCTTATAAAGCCTTCTTCTTCATAACCAATGGTGAT 3152 Query 3508 TGTGTTT-CTTGTTCTTGttttttttttttAGGTCAAATTTGGTTGAGTGGTTTTGATTT 3566 ||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||| Sbjct 3153 TGTGTTTTCTTGTTCTTGTTTTTTGATTT-AGGTCAAATTTGGTTGAGAGGTTTTGATTT 3211 Query 3567 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTGAGCTCTTTGGAATCAA 3626 ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 3212 CTTGTACATAAAGTATCATTGTTAGTTGAACTTGGAAACATTTCAGAT-TTTGGAATCAT 3270 Query 3627 TTAGAATTGGTTACAACTTT 3646 |||||||||||||||||||| Sbjct 3271 TTAGAATTGGTTACAACTTT 3290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 137920644552 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5