BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34140.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313927 jgi|Araly1|313927|fgenesh1_pm.C_scaffold_1002707 1310 0.0
> Ahg313927 jgi|Araly1|313927|fgenesh1_pm.C_scaffold_1002707
Length=1212
Score = 1310 bits (709), Expect = 0.0
Identities = 867/945 (92%), Gaps = 4/945 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTGCTGAATTATTGTAAGTTAAAGGGAAAACCTATGAGGATAATGTTTTCAGAA 60
|||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATGCTGAATTTTTACAAGTTAAAGGGAAAACCTATGAGGATAATGTTTTCAGAA 60
Query 61 CGTGATCCTAGCAACAGAATGAGTGGAC-GAGGTAACGTGTTTGTCAAGAATCTAGACGA 119
|||||||||||||| || |||| || | |||||||||||||||||||||||||||||||
Sbjct 61 CGTGATCCTAGCAAGAGGTTGAGCGG-CAGAGGTAACGTGTTTGTCAAGAATCTAGACGA 119
Query 120 ATCTATCGACAACAAGCAACTTTGCGATATGTTCTCTGCATTTGGCAAAGTTCTCTCTTG 179
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 120 ATCTATCGACAACAAGCAACTTAGCGACATGTTCTCTGCATTTGGCAAAGTTCTCTCTTG 179
Query 180 CAAAGTGGCTCGTGATGCTTCTGGAGTTTCCAAAGGATATGGGTTCGTCCAGTTTTACTC 239
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CAAAGTGGTTCGTGATGCTTCTGGAGTTTCGAAAGGATATGGGTTCGTCCAGTTTTACTC 239
Query 240 AGACCTTTCAGTCTACACCGCATGCAATTTTCACAATGGCACGCTCATCCGCAATCAACA 299
||| ||||||||| | | |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 240 AGAGCTTTCAGTCAATATCGCATGCAATGTTCGCAATGGCACGCTCATCCGCAATCAACA 299
Query 300 TATTCATGTTTGTCCATTCGTTAGCCGTGGTCAATGGGATAAATCTCGGGTTTTCACTAA 359
|||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 300 TATTCACGTTTCTCCATTCGTTAGCCGTCGTCAATGGGATGAATCTCGGGTTTTCACTAA 359
Query 360 TGTTTATGTTAAAAACTTGGTGGAGACTGCGACGGATGCTGATTTGAAGAGGCTCTTTGG 419
||||||||| |||||||||| ||||||| |||| |||| ||||||||||| | | ||||
Sbjct 360 TGTTTATGTCAAAAACTTGGCGGAGACTACGACAGATGATGATTTGAAGATGATTTTTGA 419
Query 420 GGAGTTTGGGGAGATAACTAGCGCGGTGGTGATGAAAGATGGAGAAGGTAAGTCTAGAAG 479
|||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 420 AGAGTTTGGAGAGATTACTAGTGCGGTGGTGATGAAAGACAAAGAAGGTAAGTCTAGAAT 479
Query 480 GTTCGGGTTTGTGAACTTCGAGAAGGCTGAGGCCGCGGTTACTGCGATAGAGAAGATGAA 539
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 480 GTTCGGGTTTGTGAACTTCGAGAAGGCTGAGGCCGCGGTTACTGCAATAGACAAGATGAA 539
Query 540 CGGGGTAGTAGTTGATGAAAAGGAGTTGCATGTTGGAAGAGCTCAGAGGAAAACTAATAG 599
|||| |||||||||||||||| |||||||||||||| || ||||||||||||| |||||
Sbjct 540 CGGGATAGTAGTTGATGAAAAAGAGTTGCATGTTGGGAGGGCTCAGAGGAAAAAGAATAG 599
Query 600 AACTGAGGATTTGAAAGCTAAATTTGAA-CTAGAAAAGATAATACGGGATATGAAAACAC 658
|| | | |||||||||| | | ||| || ||||||||||||| |||||||||||||||||
Sbjct 600 AATTCAAGATTTGAAAG-TCATTTTTAAACTAGAAAAGATAAAACGGGATATGAAAACAC 658
Query 659 GTAAAGGGATGAATCTTTATGTGAAGAATCTTGATGATTCTGTTGATAACACAAAGCTTG 718
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 GTAAAGGGACGAATCTTTATGTGAAGAATCTTGATTATTCTGTTGATAACACAAAGCTTC 718
Query 719 AAGAATTATTCTCAGAGTTTGGGACCATCACTTCTTGCAAGGTCATGGTCCATTCCAATG 778
||||||| |||||||||||||| || |||| ||| |||||||||||||||||| |||||
Sbjct 719 AAGAATTGTTCTCAGAGTTTGGAACTATCATTTCCTGCAAGGTCATGGTCCATCCCAATC 778
Query 779 GTATTAGCAAAGGTGTTGGGTTTGTTGAGTTCTCAACGAGCGAAGAAGCTTCGAAAGCGA 838
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 779 GTATTAGCAAAGGTGTTGGGTTTGTTGAGTTTTCAACGAGCGAAGAAGCTTCTAAAGCTA 838
Query 839 TGCTCAAGATGAATGGGAAAATGGTGGGAAATAAACCTATCTATGTTTCTTTGGCACAAT 898
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 839 TGCTTAAGATGAATGGGAAAGTGGTGGGAAATAAACCAATCTATGTTTCTTTGGCCCAAT 898
Query 899 GCAAAGAGCAACATAAGCTTCATTTACAAACTCAATTTAATAACC 943
| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 899 GTAAAGAGGAACATAAGCTTCATTTACATACTCAATTTAATAACC 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5