BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34150.1
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473569 jgi|Araly1|473569|fgenesh2_kg.1__3523__AT1G34150.1 2510 0.0
> Ahg473569 jgi|Araly1|473569|fgenesh2_kg.1__3523__AT1G34150.1
Length=1673
Score = 2510 bits (1359), Expect = 0.0
Identities = 1564/1659 (94%), Gaps = 30/1659 (2%)
Strand=Plus/Plus
Query 3 CCGTCGTTGAACTCTTTTCAACCGGCGTCGAATCTCGTTTCGTCGCCGTCTCGTTGGCTC 62
||||||||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 1 CCGTCGTTGAACTCTTTTCAACCGGCGTCGATTCTCGTTTCGT---CG-C-C----G--- 48
Query 63 TTTTCACCGGCGTCGAATCTCGTTTCGTCGCCGTCATTCGTGTATCCATCTTAAAATTCG 122
||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 49 -----ACCGGCGTCGATTCTCGTTTCGTCGCCGTCATTCGTGTATCCGTCTTAAACTCCG 103
Query 123 AGGCTGATTCATGACTATCTCCGACGCAAAATCCGATCCCGGCGGCGATGACCGAGACTC 182
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 104 CCGCTGATTCATGACTATCTCCGACGGAAAATCCGACCCCAGCGGCGATGACCGAGACTC 163
Query 183 TGAAATCGCCAAAGAAACAGAACTAGTGTTTCTCCGTAATCGCGTCAAGGAGTTAGAAGT 242
||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 164 TGAAATCGCTAAAGAAACCGAATTAGTGTTTCTCCGTAATCGCGTGAAGGAGTTAGAAGC 223
Query 243 GGAAAATGCTAAATTGTTGTCTCAGGTTTCAAGCTGCCAATGCCAACAGATGGAAGTGAA 302
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 224 GGAAAATGCTAAGTTGTTGTCTCAGGTTTCAAGCTGCCAATACCAACAGATGGAAGTGAA 283
Query 303 GCATGATCGGTCATTGTCAGATTCCAGTAGCTTAGTTAGGAGAAGGAGAGTTAGAAAAGG 362
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 284 GCATGATCGGTCAGTGTCAGATTCTAGTAGCTTAGTTAGGAGAAGGAGAGTTAGGAAAGG 343
Query 363 AGATAAGAATAGTATACCGAGTCATCTTATCTCAAAGAGATATGTTGCACTCAAAATCAT 422
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 344 AGATAAGAATAGTATACCGAGTCATCTTATCTCGAAGAGATATGTTGCACTAAAAATCAT 403
Query 423 GTATTTTGGTAAGAGATTTTATGGATTTTCGGCTGAAGCACAAATGGAACCAAGTATTGA 482
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 404 GTATTTTGGTAAGAGATTTTACGGTTTTTCGGCTGAAGCACAAATGGAACCAAGTATTGA 463
Query 483 GTCAGAAGTTTTTAAAGCACTTGAAAGGACACGGCTTTTAGTTGGGGACAAGAAAGATTC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GTCAGAAGTTTTTAAAGCACTTGAAAGGACACGGCTTTTAGTTGGGGACAAGAAAGATTC 523
Query 543 TTGTTACTCGAGATGTGGGAGAACAGATAAAGGTGTTTCCTCCACAGGGCAGGTGATTGC 602
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 524 TTGTTACTCGAGATGTGGAAGAACAGATAAAGGTGTTTCGTCCACAGGGCAGGTGATTGC 583
Query 603 TTTGTTTTTAAGATCCAGACTGAAGTCACCTCCTGGAGACTCTAAAGCCCAAGTGAATGG 662
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 584 TTTGTTCTTAAGATCCAGACTGAAGTCACCTCCTGGAGACTCTAAAGCCCAAGTTAATGG 643
Query 663 GAGAACGGGTGAAAGACCAGAATATGATTATGTAAGAGTTCTAAATCGTGCTCTCCCTGA 722
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GAAAACGGGTGAAAGACCAGAATATGATTATGTAAGAGTTCTAAATCGTGCTCTCCCTGA 703
Query 723 TGACATCCGAGTTATTGGATGGTCTCCTGCTCCTATCGACTTTCATGCAAGGTTTAGTTG 782
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 704 TGACATCCGAGTTATTGGATGGTCTCCTGCTCCTGTTGACTTTCATGCAAGGTTTAGTTG 763
Query 783 CTATGCTAGAGAATACAAATATTTTTTCTGGAGGCAGAACCTGAATCTTTCGGCCATGGA 842
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 764 CTATGCTAGAGAATACAAATACTTTTTCTGGAGACAGAACCTGAATCTTTCGGCCATGGA 823
Query 843 CTTTGCCGGGAAGAAGTTCATTGGGGAGCATGATTTCAGAAACTTCTGCAAGATGGATGT 902
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 824 CATTGCCGGGAAGAAGTTCATTGGGGAGCATGATTTCAGGAACTTCTGCAAGATGGACGT 883
Query 903 GGCAAATGTACATTGCTATACACGGCGTGTTACTTTCTTTGAAGTCTCCCCTTGTCAAAA 962
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 884 GGCAAATGTCCATTGCTATACACGACGTGTTACTTTCTTTGAAGTCTCTCCTTGTCAAAA 943
Query 963 TAGTCATGAGGGTGATCAGCTTTGCACATTTACAATGAGAGGCAGTGCTTTCCTGTGGCA 1022
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TAGTCACGAGGGTGATCAGCTTTGCACATTTACAATGAGAGGCAGTGCTTTCCTGTGGCA 1003
Query 1023 CCAGATCCGCTGTATGGTCGCCGTGCTATTCATGATTGGGCAGGGCGTTGAATCAGTTGA 1082
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CCAGATCCGCTGCATGGTCGCCGTGCTATTCATGATTGGGCAGGGCGTTGAATCAGTTGA 1063
Query 1083 TGTGATAGATACATTGTTGGACACAAAGAAAACGCCAAGAAAACCTCAATACCTATTGGC 1142
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1064 TGTGATAGATACATTGTTGGACACGAAGAAAACGCCAAGAAAACCTCAATACCTCTTGGC 1123
Query 1143 CTCAGAGATACCCTTAGTCCTCCGTACATGTGAATTCGAAAATGTTGACTTCATATGTTC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTCAGAGATACCCTTAGTCCTCCGTACATGTGAATTCGAAAATGTTGACTTCATATGTTC 1183
Query 1203 TCCAGGTGCTGCAGAGTCACTGCGGTCTCATTTCAAGAATGAATCATTGACATACCAATT 1262
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1184 TCCAGGCGCTGCAGAGTCACTTCGGTCTCATTTCAAGAATGAATCGTTGACATACCAATT 1243
Query 1263 AGAGTCTGTAATTTATCAGGAGGCTCTCCGAAACTGTTTACCTCTAAGCAACAATGTTTC 1322
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1244 AGAGTCTGTGATTTATCAGGAGGCTCTCCGGAACTGTTTACCTCTAAGCAA---TGTTTC 1300
Query 1323 AACAGAGGAAAGCTCATGCAATGGCGTAGaaaaaaaGAAGAAAAGGGCAGAACACGTTCC 1382
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1301 AACAGAGGAAAGCTCATGCAATGGCGTAGAGAAAAAGAAGAAAAGAGCAGAACACGTTCC 1360
Query 1383 CCTGTTATCTCGACCAACTGAGCCGTCGTATGAAGAACGAACTGCGAAACTGAAACCAAG 1442
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1361 CCTATTATCTCGACCAACTGAGCCGTCGTACGAAGAACGAGCTGCGAAACTGAAACCAAG 1420
Query 1443 GAAAGAAGAAACTTTGGCATGTGTAGTGTAAGGGGGCAATCTCGGCG-----ACCATCAA 1497
|||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1421 GAAACAAGAAACTT-GTCATGTGTAGTGTAAGGGGGCA-TCTCGGCGCGGCGACCATCAA 1478
Query 1498 AAGAATAGAGAGGCTTTGAGTCTGTTGTTTGTAGCAGTTGATTGTTTGCATTGATTACAT 1557
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 1479 AAGAATAGAGAGGCTTTGAGTCTGTTGTTCGTAGCAGTTGATTGTTTGAATTGATTACGT 1538
Query 1558 ATACAGTAATAATATACTAATATATGGTTTTAATATTTCTCTAAGAAATTAAATTT-CTG 1616
||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| | |
Sbjct 1539 ATACAGTAATAAT-TACTAATGTATGGTTTAAATATTTTTCTAAGAAATTAAATTTTC-G 1596
Query 1617 TTAGAGCTGGTCTCTCTAACTTATATTGTATGAAACAAA 1655
|||||||| || ||||||||||||||| ||| |||||||
Sbjct 1597 TTAGAGCTCGTGTCTCTAACTTATATTATATAAAACAAA 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65096228705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5