BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34160.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313929 jgi|Araly1|313929|fgenesh1_pm.C_scaffold_1002709 2261 0.0
> Ahg313929 jgi|Araly1|313929|fgenesh1_pm.C_scaffold_1002709
Length=1689
Score = 2261 bits (1224), Expect = 0.0
Identities = 1486/1611 (92%), Gaps = 24/1611 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTGTTTACATGGAGACGATGATACAAAAATGCGTCAGCTTCTCCCAAATCAAA 60
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGGCTCGTGTTTACATGGAGACGATGATACAAAATTGCGTCACCTTCTCCCAAATCAAA 60
Query 61 CAACTCCAATCTCACTTCCTCACCGCCGGCCATTTCCAATCTTCCTTTCTCCGTTCTCGT 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACTCCAATCTCATTTTCTCACCGCCGGCCATTTCCAATCTTCCTTTCTCCGTTCTCGT 120
Query 121 CTTCTCGAACGCTGCGCAATCTCACCATTCGGAGACCTTTCCTTCGCCGTACAAATTTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 121 CTTCTCGAACGCTGCGCAATCTCACCATTCGGCGACCTTTCCTTCGCCGTAAAAATCTTC 180
Query 181 CGGT-ACATCCCTAAACCTTTAACCAATGATTGGAACGCAATCATCCGCGGATTCGCCGG 239
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 C-GTCACATCCCTAAACCTTTAACCAATGATTGGAACGCAATCATCCGCGGATTCGCCGG 239
Query 240 AAGTTCTCATCCTTCACTTGCGTTTTCATGGTATCGTTCCATGTTGCAGCAATCTTCGTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 240 AAGTTCTCATCCTTCACTTGCGTTTTCATGGTATCGTTCCATGTTGCAGCGATCGTCGTC 299
Query 300 ATCGTCGGCTATATGTAGAGTCGATGCTTTGACTTGTTCTTTTACTCTTAAAGCTTGTGC 359
| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 A---TCGGCTTTGTGTAGAGTCGATGCTTTGACTTGTTCTTTCACTCTTAAAGCTTGTGC 356
Query 360 ACGTGCGCTTTGTTCTTCCGCTATGGATCA-ACTTCATTGTCAGATTAACCGTCGGGGAT 418
||||||||||||||||||||||||| ||| | ||||||||||||||| ||||| ||||
Sbjct 357 TCGTGCGCTTTGTTCTTCCGCTATGGTTCAGA-TTCATTGTCAGATTAGTCGTCGTGGAT 415
Query 419 TATCCGCTGATTCGCTTCTTTGTACTACGTTGCTTGATGCTTACTCTAAAAACGGAGATT 478
| ||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 416 TCTCCGCTGATGCGCTTCTCTGTACTACGTTGCTTGATGCTTACTCTAAAAATGGGGATT 475
Query 479 TAATTAGTGCGTAT-AAGTTGTTCGATGAAATGCCTGTGAGAGATGTTGCGTCGTGGAAC 537
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGATTAGTGCG-CTGAAGTTGTTCGATGAAATGCCTGTGAGAGATGTTGCGTCGTGGAAT 534
Query 538 GCGTTGATCGCGGGGTTAGTGTCTGGTAATCGAGCGAGTGAGGCGATGGAGTTGTATAAG 597
|||||||| |||||||||||| | || |||||||| | ||||||| |||||||||||||
Sbjct 535 GCGTTGATTGCGGGGTTAGTGGCGGGGAATCGAGCAAATGAGGCGTTGGAGTTGTATAAA 594
Query 598 AGAATGGAAACGGAAGGAATTAGAAGAAGTGAAGTAACTGTTGTTGCTGCTTTAGGAGCT 657
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 595 AGAATGGAAATGGAAGGGATTCGAAGAAGTGAAGTAACTGTTGTTGCTGCTTTGGGAGCT 654
Query 658 TGTTCTCATTTGGGTGATGTTAAGGAAGGTGAAAATATCTTCCATGGATAC-----AG-T 711
||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
Sbjct 655 TGTTCTCATTTGGGTGATGTTAAGGAAGGTGAAAAGATCCTCCATGGATACAATAAAGAT 714
Query 712 ---AA-----CG-ATAATGTGATTGTTAGTAACGCGGCTATTGATATGTATTCGAAATGC 762
|| | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 GCAAAGTTGGAGCATAATGTGATTGTTAGTAACGCGGTTATTGATATGTATTCGAAATGC 774
Query 763 GGGTTTGTTGATAAAGCTTATCAAGTGTTTGAACAATTCACTGGTAAGAAGAGTGTTGTT 822
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 775 GGGTTTGTTGATAAAGCTTTTCAAGTGTTTGAACAATTCACGGGTAAGAAGAGTGTTGTA 834
Query 823 ACATGGAACACTATGATTACAGGGTTTGCAGTGCATGGAGAAGCACATAGAGCGTTGGAG 882
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 835 ACATGGAACACTATGATCACGGGGTTTGCAGTGCACGGAGAAGCACACAGAGCGTTGGAG 894
Query 883 ATTTTTGACAAGTTGGAGGATAATGGTATTAAGCCTGATGATGTCTCGTACTTAGCTGCT 942
||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 ATTTTCGAGAAGTTGGAGCATAATGGCATTAAGCCTGATGATGTCTCGTACTTAGCTGCT 954
Query 943 TTAACTGCGTGTAGACATGCGGGGTTAGTGGAGTATGGTTTGTCTGTATTCAATAATATG 1002
|||| ||||||||||| | || ||||||||||||||| | ||| ||||||| || |||
Sbjct 955 CTAACCGCGTGTAGACACACAGGATTAGTGGAGTATGGTATATCTATATTCAACAACATG 1014
Query 1003 GCTTGTAAGGGCGTTGAGCGTAACATGAAGCACTATGGTTGTGTGGTTGATCTGTTAAGC 1062
|||||||| || ||||||| |||||||||||| || |||||||| |||||||||||||||
Sbjct 1015 GCTTGTAACGGAGTTGAGCCTAACATGAAGCATTACGGTTGTGTAGTTGATCTGTTAAGC 1074
Query 1063 CGTGCAGGAAGGTTGAGAGAAGCTCACGATATCATATGTTCAATGTCGATGATTCCGGAT 1122
|||||||||||| |||||||||||||||| || |||||||| ||||||||| ||||||||
Sbjct 1075 CGTGCAGGAAGGCTGAGAGAAGCTCACGACATTATATGTTCGATGTCGATGGTTCCGGAT 1134
Query 1123 CCTGTTTTGTGGCAGAGCCTTCTTGGAGCTTCGGAGATTTATAGTGATGTTGAAATGGCT 1182
|||||||||||||||||||||||||||||||| |||||| | | | |||| |||||||||
Sbjct 1135 CCTGTTTTGTGGCAGAGCCTTCTTGGAGCTTCAGAGATTCACAATAATGTCGAAATGGCT 1194
Query 1183 GAGATTGCTTCTAGGGAAATAAAGGAAATGGGAGTTAACAATGATGGTGATTTTGTGTTG 1242
||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1195 GAGATAGCTTCTAGGAAAATAAAGGAAATGGGTGTTAACAATGACGGTGATTTTGTGTTG 1254
Query 1243 CTATCGAATGTTTATGCTGCGCAGGGACGGTGGAAAGATGTAGGACGAGTGAGAGATGAT 1302
||||| || |||||||| || |||||||||||||| || ||||||| |||||||||||||
Sbjct 1255 CTATCAAACGTTTATGCAGCTCAGGGACGGTGGAAGGACGTAGGACTAGTGAGAGATGAT 1314
Query 1303 ATGGAAAGCAAACAAGTGAAGAAAATTCCAGGTCTTAGCTACATAGAAGCCAAAGGAACG 1362
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1315 ATGGAAAGCAAACAAGTGAAGAAAGTTCCGGGTATTAGCTACATAGAAGCCAAAGGAACG 1374
Query 1363 ATTCATGAATTCTACAACAGTGACAAGAGCCATGAACAGTGGAGAGAGATTTATGAGAAG 1422
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ATTCATCAATTCCACAACAGTGACAAGAGCCATGAACAGTGGAGAGAGATTTATGAGAAG 1434
Query 1423 ATCGATGAGATCAGGTTCAAGATAAGAGAGGATGGTTACGTGGCGCAGACAGGACTTGTG 1482
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1435 ATCGACGAGATCAGGTTCAAGATAAGGGAGGATGGTTACGTGGCGCAGACGGGACTTGTG 1494
Query 1483 TTGCACGACATAGGAGAGGAAGAGAAAGAGAACGCTTTGTGCTATCACAGCGAGAAATTG 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTGCACGACATAGGAGAGGAAGAGAAAGAGAACGCTTTGTGCTATCACAGCGAGAAATTG 1554
Query 1543 GCGGTGGCCTACGGACTGATGATGATGGATGGTGCGGACGAGGAGAGTCCG 1593
|||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1555 GCGGTGGCCTACGGACTGATGATGATAGATGGCGCGGACGAGGAGAGTCCG 1605
Score = 152 bits (82), Expect = 8e-36
Identities = 84/85 (99%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1693 GTTCGGTTTCATAGGTTCAAAGATGGTTCTTGCTCTTGCAGAGATTTTTGGTAACGTTAC 1752
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GTTCGATTTCATAGGTTCAAAGATGGTTCTTGCTCTTGCAGAGATTTTTGGTAACGTTAC 1664
Query 1753 AAAATTAAGAGGGTGGCAATTTTAA 1777
|||||||||||||||||||||||||
Sbjct 1665 AAAATTAAGAGGGTGGCAATTTTAA 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5