BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34170.3
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913246 jgi|Araly1|913246|Al_scaffold_0001_3500 785 0.0
Ahg319704 jgi|Araly1|319704|fgenesh1_pm.C_scaffold_3002720 377 1e-103
Ahg473654 jgi|Araly1|473654|fgenesh2_kg.1__3608__AT1G35540.1 342 4e-93
> Ahg913246 jgi|Araly1|913246|Al_scaffold_0001_3500
Length=1878
Score = 785 bits (425), Expect = 0.0
Identities = 697/824 (85%), Gaps = 36/824 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAATAATGGAGAAATGAATGCACAGCCTGAATTA-T---C--AGTTGATATAACC 54
|||||||| |||| |||| ||||||| |||||||||||| | | | |||||| ||||
Sbjct 1 ATGGAAAACAATGAAGAATTGAATGCCCAGCCTGAATTATTAGGCATAATTGATAGAACC 60
Query 55 AAGACTTATATGTATGAGAAATTATGGAACATATGTGCTGGACCTTTGTGTGTTCTTCCG 114
|||| |||||||||||| |||| ||||| |||||||||||||||||||||| ||||||
Sbjct 61 CAGACCTATATGTATGAGCAATTGTGGAAAATATGTGCTGGACCTTTGTGTGATCTTCCA 120
Query 115 AAACCTGGAGAAAAAGTTTATTACTTTCCTCAAGGGCACATCGAGCTCATTG-AGAATTC 173
|||||||||||||| |||||||| ||||||||||||||||| |||||||||| || | ||
Sbjct 121 AAACCTGGAGAAAAGGTTTATTATTTTCCTCAAGGGCACATTGAGCTCATTGAAGCA-TC 179
Query 174 TACAAGAGATGAATTGGATCATATCAGGCCA-ATTTTTGATCTTCCATCTAAGCTTCGAT 232
||||| |||||| |||||||| || |||||| | ||||||||||||||||||||||||||
Sbjct 180 TACAAAAGATGAGTTGGATCAGATAAGGCCACA-TTTTGATCTTCCATCTAAGCTTCGAT 238
Query 233 GTCGTGTTG-TGGCTATTGATCGTAAGGTAGACAAAAATACAGATGAAGTCTATGCTCAG 291
|| |||||| | | |||| | | |||| ||||| ||||||| ||||| ||||| || ||
Sbjct 239 GTTGTGTTGAT-GATATTCAACTTAAGATAGACCAAAATACGGATGACGTCTACGCAGAG 297
Query 292 ATTTCGTTAATGCCTGATACAACAGAAGTTATGAC-CCATAATACTACTATGGATACTCG 350
|||| |||||||| ||||||||||| ||||| || || || |||||||||||||| ||
Sbjct 298 ATTTATTTAATGCCAGATACAACAGACGTTATAACTCC-TATTACTACTATGGATAATCA 356
Query 351 AAGACCAATAGTTTAtttttttAGTAAAATTTTAACGGCGTCTGACGTCAGTTTA-AGTG 409
||||||||| ||||||| |||||||||||||||||| ||||||||| || | | ||
Sbjct 357 AAGACCAATGGTTTATTCTTTTAGTAAAATTTTAACTTCGTCTGACGCCAACACACA-TG 415
Query 410 GTGGATTAAT-TATTCCCAAACA-ATATGCCATTGAGTGTTTTCCTCCGCTGGATATGTC 467
||||||| || ||||| ||| | | |||||| ||| ||| |||||||||||||||||||
Sbjct 416 GTGGATT-ATCTATTCTTAAA-AGACATGCCACTGAATGTCTTCCTCCGCTGGATATGTC 473
Query 468 CCAACCAATATCC-ACACAAAATCTTGTTGC-AAAGGATCTCTATGGTCAAGAATGGAGT 525
||||| || || | || |||||||||| ||| |||||| |||||| ||||||||
Sbjct 474 CCAACGAA-CGCCTATGCAGCATCTTGTTGCGAAA-GATCTCCATGGTCGAGAATGGACA 531
Query 526 TTCAAACATGTC-TTTAGAGGTACACCGCAGAGACATATGTTTACTAGCGGCGGCGGCTG 584
||||| ||| || |||||||||||||||| ||||||| | ||| || | | | |||||
Sbjct 532 TTCAAGCAT-TCTTTTAGAGGTACACCGCGGAGACATCT-TTT--TA-C--CAGTGGCTG 584
Query 585 GAGCGTATTTGCAACAACAAAAAGATTGATTGTTGGGGATA-TATTTGTACTCCTTAGAG 643
|||| ||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 585 GAGCTTATTTGCAACAACAAAAAGATTGATTGTTGGGGATGCT-TTTGTATTCCTTAGAG 643
Query 644 GAGAGAATGGGGAGTTACGATTTGGTATTAGGCGAGCAA-AGCATCAACAAGGCCACATA 702
|||||||||||||| || || |||||||||||||||||| | ||||||| |||||||| |
Sbjct 644 GAGAGAATGGGGAGCTAGGAGTTGGTATTAGGCGAGCAAGA-CATCAACTAGGCCACAAA 702
Query 703 CCTTCATCAGTAATATCAGCAAATTGTATGCAACATGGAGTAATAGCTTCAGTAGTGAAT 762
||||||| |||||||||| || | |||||| || |||||||||| ||||||||||| |||
Sbjct 703 CCTTCATTAGTAATATCAACACAGTGTATGAAAGATGGAGTAATTGCTTCAGTAGTAAAT 762
Query 763 GCTTTTAAAACCAAATGCATGTTCAATGTGGTTTATAAGCCAAG 806
|||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 763 GCTTTTAAAAGCAAATGCAAGTTCATTGTGGTTTATAAGCCAAG 806
Score = 507 bits (274), Expect = 1e-142
Identities = 437/515 (85%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 805 AGGATGCAGTTTGAGGGT-AAGGATTTTTCTGAAAAAAGATACGATGGGACGATTATTGG 863
||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 883 AGGATGCGGTTTGAGGGTCAA-GATTTTTCTGAAAAAAGATACTCTGGGACGATTATTGG 941
Query 864 TGTAAATGACATGTCTCCTCATTGGAAGGATTCAGAATGGCGAAGCCTAAAAGTGCAATG 923
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 942 TGTAAATGACATGTCTCCTCATTGGAAAGATTCGGAATGGCGAAGCCTACAAGTGCAATG 1001
Query 924 GGACGAGCTTTCACCATTTCTAAGACCTAATCAGGTTTCACCTTGGGACATCGAGCATCT 983
|||||||||||||||||||| ||||||| || |||||||||| ||||| || || ||| |
Sbjct 1002 GGACGAGCTTTCACCATTTCCAAGACCTGATAAGGTTTCACCATGGGAAATTGAACATTT 1061
Query 984 AATTCCTTCGTCA-GATATCTCTCAATCAAGTTTGaaaa-agaaaaaaCATTGG-CTTCA 1040
||| ||||||||| | ||| || || ||| | | | ||||||||| | | | |||
Sbjct 1062 AATCCCTTCGTCAAG-TATTTCCCAGCCAACTGT-ACTCCAGAAAAAACGT-GCACGTCA 1118
Query 1041 AT-TGAATGAAATTGGTGCAACATTATCGAATCTTTGGACATGCCAAGAAATTGGACAA- 1098
|| | |||||||| ||| |||||| ||||||||||| |||| |||||||||||||||||
Sbjct 1119 ATGT-AATGAAATCGGTTCAACATCATCGAATCTTTTGACAGGCCAAGAAATTGGACAAT 1177
Query 1099 CGGAGCATGAATTCTCCTATA-AGTGTTCCTGAGTTTAGTTATCCCAATGCAATTGAAGA 1157
|| ||| ||| |||||| | | ||||||||||||||||||| || | ||||| |||||||
Sbjct 1178 CG-AGCTTGAGTTCTCCGA-AGAGTGTTCCTGAGTTTAGTTGTCGCGATGCAGTTGAAGA 1235
Query 1158 TTCAAAGTTTCTTTCTGGTTTGCTACTGAATCACTCACTCCTAGCCATACCTAATGAAAA 1217
||| ||||||| ||||| || |||| ||| | ||| | ||| |||||||||||| |||
Sbjct 1236 TTCCAAGTTTCCTTCTGATTGGCTAATGAGTGACTTAGTCCCAGCCATACCTAAACCAAA 1295
Query 1218 CTATAACAGCGACCAAATGATTCAACCAAGGAAAGAAGATATAACAACTGAAGCAACCAC 1277
| |||||| | ||||| || |||||| || ||||||| | ||||||||||||||||||||
Sbjct 1296 CAATAACAACAACCAATTGGTTCAACAAACGAAAGAAAAGATAACAACTGAAGCAACCAC 1355
Query 1278 TAGTTGCCTCTTGTTTGGAGTTGATCTGACCAAAG 1312
||||||| | ||||||||||||||||| |||||||
Sbjct 1356 TAGTTGCATATTGTTTGGAGTTGATCTTACCAAAG 1390
Score = 368 bits (199), Expect = 7e-101
Identities = 293/337 (87%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 1309 AAA-GTTCATATGCAAGGTGTAGCCATAAGTAGAGCTGTGGATTTAACTGCTATGCATGG 1367
||| ||||| ||||||||||||| ||| | ||||||||||||||||||| | | |||||
Sbjct 1545 AAAGGTTCAGATGCAAGGTGTAGTCATTGGCAGAGCTGTGGATTTAACTGTTTTTCATGG 1604
Query 1368 ATACAATCAGCTGATACAAAAACTGGAAGAACTCTTTGATCTCAAAGACGAGTTACGAA- 1426
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1605 ATACAATCAGTTGATACAAAAACTAGAAGAACTCTTTGATCTCAAAGACGAGTTACGAAG 1664
Query 1427 CTCGCAATCAATGGGAAATAGTTTTTACAAACAATGAAGGAGCTGAGATGCTTGTCGGGG 1486
| ||||||||||||||||||||||||| ||||||||||||| || ||||| | ||||||
Sbjct 1665 C-CGCAATCAATGGGAAATAGTTTTTATAAACAATGAAGGAAATGTGATGCCTCTCGGGG 1723
Query 1487 ATGATCCATGGCCTGAGTTCTGCAATATGGCGAAAAGAATATTCATATGCTCAAAAGAGG 1546
|||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||| |
Sbjct 1724 ATGATCCATGGCCTGAATTCTGCAATATGGCGAAAAAAATATTTATAGGCTCAAAAGAAG 1783
Query 1547 AGATAAAGAAA-ATGAAGTTGAAGAACAAATTCTT-TCAACCTGAATCAAAAGCTTTAAC 1604
||||| | ||| ||||||| ||||||| | || |||| || |||||| || ||||||
Sbjct 1784 AGATAGA-AAAGATGAAGTCCCGGAACAAAGT-TTCTCAAGCTAAATCAACAGTTTTAAC 1841
Query 1605 ATCTTCA---GACGTACCACCAAACGTCACAG-ATAA 1637
|||||| ||||||||||||||||||| || ||||
Sbjct 1842 ATCTTCTTCTGACGTACCACCAAACGTCAAAGCATAA 1878
> Ahg319704 jgi|Araly1|319704|fgenesh1_pm.C_scaffold_3002720
Length=1794
Score = 377 bits (204), Expect = 1e-103
Identities = 604/789 (77%), Gaps = 59/789 (7%)
Strand=Plus/Plus
Query 44 TTGATATAACCAAGACTTATATGTATGAGAAATTATGGAACA-TATGTGCTGGACCTTTG 102
||||| || |||||| |||||||| ||| | |||||||| | | |||||||||||||||
Sbjct 53 TTGATGTATCCAAGAGATATATGTACGAGCAGTTATGGAA-ATTGTGTGCTGGACCTTTG 111
Query 103 TGTGTTCTTCCGAAACCTGGAGAAAAAGTTTATTACTTTCCTCAAGGGCACATCGAGCTC 162
|||| | |||| ||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 112 TGTGATATTCCAAAAATTGGAGAAAAAGTTTATTACTTTCCTCAAGGCCACATAGAGCTT 171
Query 163 ATTGAGA-ATTCTACAAGAGATGAATTGGATCATAT-CAGGCCAATTTTTGATCTTCCAT 220
|||||| || ||||||||| || ||| || | || || ||||||||||||||||| |
Sbjct 172 ATTGAGGCATA-TACAAGAGAAGAGTTGAATAAAATACAA-CCAATTTTTGATCTTCCTT 229
Query 221 CTAAGCTTCGATGTCGTGTTGTGGCTATTGATCGTAAGGTAGACAAAAATACAGATGAAG 280
||||||||| |||||||||| | |||||| | | |||||| || ||||||| ||||| |
Sbjct 230 CTAAGCTTCAATGTCGTGTTATTGCTATTCAGCTTAAGGTGGAAAAAAATAGTGATGA-G 288
Query 281 TCT-ATGCTCAGATTTCGTTAATGCCTGATACAACAGAAGTTATGA-CCCATAATACTAC 338
|| ||||| | ||| | || ||||| ||||| || | ||| | | ||| || | | |
Sbjct 289 ACTTATGCTGAAATTACTTTGATGCCAGATACG-CA-A-GTTGTAATCCC-TACT-C-AG 342
Query 339 TATGGATACTCG--A-AGACCAATAGTTTAtttttttAGTAAAA-TTTTAACGGCGTCTG 394
||| ||| || | || ||| | ||| ||| |||| ||| |||||||||| || |
Sbjct 343 AATG-ATAATCATTATAGGCCATTGGTTAATTCCTTTAC-AAAGGTTTTAACGGCCTCAG 400
Query 395 ACGTCA-GTTTA-AGTGGTGGATTAAT-TATTCCCA-AACAA-TATGCCATTGAGTGTTT 449
| || | | | ||||||||| | | |||||| || || | ||||||||| ||| |
Sbjct 401 ATA-CAAGCGTCCA-TGGTGGATTC-TCTGTTCCCAGAA-AACT-TGCCATTGAATGTCT 455
Query 450 TCCTCCGCTGGATATGTCCCAACCAATATCCA-CACAA-AATCTTGTTGCAA-AGGATCT 506
||||||||||||||||| || || || || ||||| || ||| || | | || ||||
Sbjct 456 CCCTCCGCTGGATATGTCTCAGCCTCTA-CCGGCACAAGAA-CTTCTTACTATAG-ATCT 512
Query 507 CTATGGTCAAG-AATGGAGTTTCAAACAT-GTCTTTAGAGGTACACCGCAGA-GACATAT 563
| |||| || ||||||| |||||||| | || ||||||||||||| || ||||| |
Sbjct 513 CCATGGG-AATCAATGGAGATTCAAACACAG-CTACAGAGGTACACCGC-GAAGACATTT 569
Query 564 GTTTACTAGCGGCGGCGGCTGGAGCGTATTTGCAACAACAAAAAGATTGATTGTTGGGGA 623
||| || | | | | |||| | ||| ||||| |||||| |||| ||| || ||
Sbjct 570 GTTAAC-ATCAG-GT----TGGAATGCATTCACAACATCAAAAAAATTGGTTGCAGGAGA 623
Query 624 TAT-ATTTGTACTCCTTAGAGGAGAGAATGGGGAGTTACGATTTGGTATTAGGCGAGCAA 682
| | ||| ||| ||||||| ||||||| ||| ||||||||| ||||||| || |||||
Sbjct 624 TGTTATT-GTATTCCTTAGGGGAGAGACTGGAGAGTTACGAGTTGGTATCAGACGAGCGG 682
Query 683 -AGCATCAACAAG-GCCACATACCTTCATCAGTAATATCAGCAAATTGTATGCA-ACATG 739
| ||||||||| | |||||| ||||||| |||||||| | || ||||| | |||||
Sbjct 683 GA-CATCAACAAAAGA-ACATACATTCATCACTAATATCAATAGATAGTATG-AGACATG 739
Query 740 GAGTAATAGCTTCAGTAGTGAATGCTTTTAA-AACCAAATGCATGTTCAATGTGGTTTAT 798
||||||| ||||| | |||| |||||||||| |||||| || ||||||| |||||||||
Sbjct 740 GAGTAATTGCTTCCGCAGTGCATGCTTTTAATAACCAA-TGTATGTTCATTGTGGTTTAC 798
Query 799 AAGCCAAGG 807
|||||||||
Sbjct 799 AAGCCAAGG 807
> Ahg473654 jgi|Araly1|473654|fgenesh2_kg.1__3608__AT1G35540.1
Length=1806
Score = 342 bits (185), Expect = 4e-93
Identities = 604/797 (76%), Gaps = 66/797 (8%)
Strand=Plus/Plus
Query 41 CAGTTGATATAACCAAGACTTATATGTATGAGAAATTATGG-AACATATGTGCTGGACCT 99
|||||||| | |||||| |||||||| ||| | |||||| ||| | ||||||||||||
Sbjct 50 CAGTTGATGGATCCAAGAGATATATGTACGAGCAGTTATGGAAAC-TGTGTGCTGGACCT 108
Query 100 TTGTGTGTTCTTCCGAAACCTGGAGAAAAAGTTTATTACTTTCCTCAAGGGCACATCGAG 159
||||||| | |||| ||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 109 TTGTGTGATATTCCAAAAATTGGAGAAAAAGTTTATTACTTTCCTCAAGGCCACATAGAG 168
Query 160 CTCATTGAGA-ATTCTACAAGAGATGAA-TTGGATCA-T-ATCAGGCCAATTTTTGATCT 215
|| ||||| || ||||| |||| || ||| || | | | || |||||| |||||||
Sbjct 169 CTTGTTGAGGCAT-CTACAGGAGAA-AAGTTGAATGAGTTA-CAA-CCAATTGTTGATCT 224
Query 216 TCCATCTAAGCTTCGATGTCGTGTTGTGGCTATTGATCGTAAGGTAGACAA-AAATACAG 274
||| |||||||||| |||||||||| | ||||| | | |||||| || || ||||| |
Sbjct 225 TCCTTCTAAGCTTCAATGTCGTGTTATTACTATTCAGCTTAAGGTGGA-AAGAAATAGTG 283
Query 275 ATGAAGTCT-ATGCTCAGATTTCGTTAATGCC-TGATACAACAGAAGTTATGA-CCCATA 331
|||| | || ||||| |||| | || ||||| | ||||||| ||||| | | ||| ||
Sbjct 284 ATGA-GACTTATGCTGAGATCACTTTGATGCCAT-ATACAACTCAAGTTGTAATCCC-TA 340
Query 332 ATACTACTATGGATACTCGA---AGACCAATAGTTTAtttttttAGTAAAA-TTTTAACG 387
| | | ||| | | || | || ||| ||||| ||| |||| ||| |||||||
Sbjct 341 CT-C-AGAATGAAAA-TCAATTTAGGCCATTAGTTAATTCCTTTAC-AAAGGTTTTAACA 396
Query 388 GCGTCTGACGTCA-GTTTA-AGTGGTGGATTAAT-TATTCCCA-AACAA-TATGCCATTG 442
|| || || || || | ||||||||| | | |||| | || || | ||||||||
Sbjct 397 GCCTCAGATA-CAAGTGCCCA-TGGTGGATTC-TCTGTTCCGAGAA-AACT-TGCCATTG 451
Query 443 AGTGTTTTCCTCCGCTGGATATGTCCCAACCAATATCCA-CACAA-AATCTTGTTGCAA- 499
| ||| ||||||||||||||||||| || || || || ||||| || ||| || | |
Sbjct 452 AATGTCTTCCTCCGCTGGATATGTCTCAGCCTTTA-CCGGCACAAGAA-CTTCTTACTAT 509
Query 500 AGGATCTCTATGGTCAAG-AATGGAGTTTCAAACAT-GTCTTTAGAGGTACACCGCAGA- 556
|| ||||| ||||| || ||||||| |||||||| | || |||||||||||||| ||
Sbjct 510 AG-ATCTCCATGGT-AATCAATGGAGATTCAAACACAG-CTATAGAGGTACACCGC-GAA 565
Query 557 GACATATGTTTACTAGCGGCGGCGGCTGGAGCGTATTTGCAACAAC-AAAAAGATTGATT 615
||||| |||| || | | | | |||| | ||| |||| | ||||| |||| ||
Sbjct 566 GACATTTGTTAACAA-CAG-GT----TGGAATGCATTCATAACATCCAAAAA-ATTGGTT 618
Query 616 GTTGGGGATAT-ATTTGTACTCCTTAGAGGAGAGAATGGGGAGTTACGATTTGGTATTAG 674
| |||||| | ||| ||| ||||||| ||||||| ||| ||||||||| ||||||| ||
Sbjct 619 GCAGGGGATGTTATT-GTATTCCTTAGGGGAGAGACTGGAGAGTTACGAGTTGGTATCAG 677
Query 675 GCGAGCAA-AGCATCAACAAGGCCACATACCTTCATCAGTAATATCAGCA-AATTGTATG 732
||||| | |||||||||| |||||||||||||| |||||||| | || |||||
Sbjct 678 ACGAGCGGGAT-ATCAACAAGGGAACATACCTTCATCAATAATATCAATAGAAA-GTATG 735
Query 733 CA-ACATGGAGTAATAGCTTCAGTAGTGAATGCTTTTAA-AACCAAATGCATGTTCAATG 790
| |||||||||||| ||||| | | | |||||||| | |||||| || ||||||| ||
Sbjct 736 -AGACATGGAGTAATTGCTTCTGCAAAGCATGCTTTTGATAACCAA-TGTATGTTCATTG 793
Query 791 TGGTTTATAAGCCAAGG 807
||||||| |||||||||
Sbjct 794 TGGTTTACAAGCCAAGG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5