BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34180.2
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473571 jgi|Araly1|473571|fgenesh2_kg.1__3525__AT1G34180.1 2139 0.0
Ahg336483 jgi|Araly1|336483|fgenesh1_pg.C_scaffold_1003048 636 0.0
> Ahg473571 jgi|Araly1|473571|fgenesh2_kg.1__3525__AT1G34180.1
Length=1984
Score = 2139 bits (1158), Expect = 0.0
Identities = 1506/1666 (90%), Gaps = 56/1666 (3%)
Strand=Plus/Plus
Query 224 GTCTATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTTTTTCACTCCAAGGAATAGGA 283
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 317 GTCTATCGATGTTGAAGACGGGAGATCGACAGTGGTTCTTTTTCACTCCAAGGAATAGGA 376
Query 284 AGTATCCTAACGCAGCTAGGTCAAGTAGAGGTACTGCAACTGGTTATTGGAAGGCGACAG 343
||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| || |
Sbjct 377 AGTATCCAAACGCAGCTAGGTCAAGCAGAGGTACTGCTACTGGGTATTGGAAGGCAACGG 436
Query 344 GAAAGGATCGAGTCATTGAGTACAATTCAAGATCTGTTGGACTCAAGAAGACTCTTGTTT 403
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 437 GAAAGGATCGAGTCATTGAGTACAATTCCAGATCGGTTGGACTCAAGAAGACTCTTGTTT 496
Query 404 TCTATAGAGGTCGTGCTCCTAATGGTGAGAGAACTGACTGGGTGATGCATGAGTACACTA 463
||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 497 TCTATAGAGGTCGGGCTCCTAATGGTGAGCGAACTGACTGGGTGATGCACGAGTACACGA 556
Query 464 TGGATGAAGAAGAGCTAGGGAGATGTAAGAACGCTAAGGAGTATTATGCTCTTTATAAGC 523
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 557 TGGATGAAGAAGAGCTCGGGAGATGTAAGAACGCCAAGGAGTATTATGCTCTTTATAAGC 616
Query 524 TTTATAAGAAGAGTGGGGCTGGTCCTAAGAATGGTGAACAGTATGGTGCTCCGTTCCAAG 583
| || ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 617 TGTACAAGAAAAGTGGGGCTGGTCCCAAAAATGGTGAACAGTATGGTGCTCCGTTTCAAG 676
Query 584 AAGAAGAATGGGTTGATAGTGATAGTGAAGATGCAGATAGTGTCGCTGTACCGGATTATC 643
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 677 AAGAAGAATGGGTTGATAGTGATAGTGAAGATGCAGATAATGTTGCTGTACCGGATTATC 736
Query 644 CCGTGGTCCGTTATGAGAATGGTCCTTGTGTGGATGATACTAAATTTTGCAATCCTGTCA 703
| ||||| ||||||||||| ||| | ||| |||| ||| |||||||| |||||||||||
Sbjct 737 CTGTGGTTCGTTATGAGAACAGTCGTCGTGCGGATAATATTAAATTTTCCAATCCTGTCA 796
Query 704 AACTTCAGTTAGAGGATATTGAGAAGCTTCTCAATGAAATCCCAGATGCACCCGGGGTTA 763
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 797 ATCTTCAGTTAGAGGATATCGAGAAGCTTCTCAATGAAGTCCCAGATGCACCCGGGGTTA 856
Query 764 AC-CAAAGACAGTTTGATGAGTTTGTTGGTGTTCCACAGGGTAATAGTGCAGAAGTGATA 822
|| ||| |||| || ||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 857 ACTCAA-GACAATTCAATGAGTTTGTTGGTGCTCCGCAGGGTAATAGCGCAGAAGTGATA 915
Query 823 CAGAGCACATTGCTGAATAATTCTTCTGGAGAGTATATTGACCCTCGGACGAAT-GGAAT 881
| ||||||||||||||||||||||||||||||| | ||||||| |||| ||| ||| |
Sbjct 916 GAAAGCACATTGCTGAATAATTCTTCTGGAGAGTTTCTTGACCCCCGGAA-AATTGGAGT 974
Query 882 GTTCTTGCCAAATGGCCAGCTATACAACAGGGACTCGAGTTTTCAGTCCCATTTGAA-T- 939
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |
Sbjct 975 GTTCTTGCCAAATGGCCAGCCATACAACAGGCACTCGAGTTTTCAGTCCCAACTGAAGTC 1034
Query 940 -------TCATTTGAGGCTACCTCTGGTATGGCACCTCTTCTAGATAATGAGAAGGAGGA 992
||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1035 AGCAAACTCATTTGAGGCTACCTCTGGTATGGCACCTCTTCTAGATTTTGAGAAGGAGGA 1094
Query 993 G---TACATTGAAATGAATGATCTTCTGATCCCTGAGCTCGGTGCTTCT-TCAACAGAGA 1048
| |||||||||||| ||||||||||||||||||| ||||| |||||| | ||| ||||
Sbjct 1095 GGACTACATTGAAATGGATGATCTTCTGATCCCTGAACTCGGAGCTTCTCT-AACTGAGA 1153
Query 1049 AATCCACAGAGTTCTTGA-ACCATGGTGAATTTGGTGATGTTAATGAATACGACCAATTG 1107
|||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||
Sbjct 1154 AATCCACAGAGTTCTTGAGAC-ACGGTGAATTTGGTGATGTTAATGAATATGACCAATTG 1212
Query 1108 TTCAATGACAT--------------AT--C--TGTTTTTCAGGGAACTTCTACAGATCTG 1149
||| ||||||| || | |||||||||||||||||||||| |||||
Sbjct 1213 TTCCATGACATTCTCGTGTCTTTGGATGACCCTGTTTTTCAGGGAACTTCTACAAATCTG 1272
Query 1150 TCTTGTCTGAGTAATTTTACTAATAACACATCAGGCCAAAGACAGCAATTACTTTA-TGA 1208
|||| ||||||||||||||||||||||||||||| ||| |||||||||| || ||| | |
Sbjct 1273 TCTTCTCTGAGTAATTTTACTAATAACACATCAGACCAGAGACAGCAAT-ACCTTAATCA 1331
Query 1209 ACAGTTCCAGTACCAGACACCTGAGAACCAGCTTAATAACTACATGCATCCTAGTACCAC 1268
|||||| ||||||||| | |||||||||||||| ||||||| |||| |||||||||||||
Sbjct 1332 ACAGTTTCAGTACCAGGCCCCTGAGAACCAGCTGAATAACTTCATGTATCCTAGTACCAC 1391
Query 1269 TCTTAATCAGTTCACTGACAATATGTGGTTTAAAGATGATCAGGCTGCTCTCTATGTTCA 1328
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1392 TATTAATCAGTTCACTGACAATATGTGGTTTAAAGATGATCAGGCTGCTCTCTTTGTTCA 1451
Query 1329 ACCACCACAATCTTCTTCTGGAGCATTCACTTCACAGTCAACAGGTGTGATGCCTGAGTC 1388
||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1452 ACCAC-A-A-TCTTCTTCTGGAGCATTCGCTTCACAGTCAACAGGTGTGATGCCTGAGTC 1508
Query 1389 TATGAATCCCACTATGAGTGTAAATCCCCAATACAAGGAAGGACAAAATGGTGGTGGAAC 1448
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1509 TATGAATCCCACTATGAGTGTAAATCCCCAAGACAAGGAAGGCCAAAATGGTGGTGGAAC 1568
Query 1449 AAGGAGCCAGTTCTCATCAGCTCTGTGGGAATTATTGGAATCAATACCATCAACACCAGC 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AAGGAGCCAGTTCTCATCAGCTCTGTGGGAATTATTGGAATCAATACCATCAACACCAGC 1628
Query 1509 CTCTGCCTGTGAGGGTCCTCTTAACCAGACCTTTGTGCGTATGTCTAGCTTCAGCCGCAT 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1629 CTCTGCCTGTGAGGGTCCTCTTAACCAGACCTTTGTGCGTATGTCTAGCTTCAGCCGGAT 1688
Query 1569 CAGGTTCAATGGAACGTCAGTGACTAGTAGAAAAGTCACTGTAGCAAAGAAGCGTATCAG 1628
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1689 CAGGTTCAATGGAACGTCAGTGGCTAGTAGAAAAGTCACTTTAGCAAAGAAGCGTATCAG 1748
Query 1629 TAACAGAGGTTTTCTTCTGTTATCAATTATGGGTGCTTTGTGTGCTATCTTCTGGGTGTT 1688
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1749 TAACAGAGGTTTTCTTCTGTTATCAATTATGGGTGCTTTGTGTGCCATCTTCTGGGTGTT 1808
Query 1689 CAAAGCCACCGTTGGAGTTATGGGAAGACCTCTCTTGTCGTGACCTAGACTCTTGAATCT 1748
|| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1809 CATAGCCACAGTTGGAGTTTTGGGAAGACCTGTCTTGTCGTGACCTAGACTCTTGTTTCA 1868
Query 1749 TGATTCAGCATAAGTTAGCCTGATCCACATCTTTGATTATGTATAGAGTTTGAAAGAGTT 1808
||| | | ||| ||| |||||| |||||||| ||||||||||||||| || ||
Sbjct 1869 GGATAAATTAGAAGAAAGCATGATCCTCATCTTTGGTTATGTATAGAGTTT-AA----TT 1923
Query 1809 TAATTCTTAACAAAAGA-TTTCTTTTTTC--CTGGATTCTCTGATG 1851
||||||||| | ||| ||||||| |||||||||||||||
Sbjct 1924 -----CTTAACAAATGGCTTTTTTTTTTCTTCTGGATTCTCTGATG 1964
Score = 311 bits (168), Expect = 1e-83
Identities = 182/189 (96%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGATTCTTCTCGTGATTCGTGTTTCAAAGCTGGTAAGTTTAGTGCTCCAGGTTTT 60
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 130 ATGGTTGATTCTTCTCCTGATTCGTGTTTCAAAGCTGGTAAGTTTAGCGCTCCAGGTTTT 189
Query 61 CGATTTCACCCTACTGATGAAGAGCTTGTGGTTTATTATCTTAAGAGGAAGATCTGTTGT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CGATTTCACCCGACTGATGAAGAGCTTGTGGTTTATTATCTTAAGAGGAAGATCTGTTGT 249
Query 121 AAAAAACTTCGAGTCAATGCCATTGGTGTCGTTGATGTTTACAAAGTCGATCCTTCTGAA 180
| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 AGAAAACTTAGAGTCAACGCCATTGGTGTCGTTGATGTCTACAAAGTCGATCCTTCTGAA 309
Query 181 TTGCCTGGT 189
|||||||||
Sbjct 310 TTGCCTGGT 318
> Ahg336483 jgi|Araly1|336483|fgenesh1_pg.C_scaffold_1003048
Length=1644
Score = 636 bits (344), Expect = 0.0
Identities = 481/546 (88%), Gaps = 14/546 (3%)
Strand=Plus/Plus
Query 224 GTCTATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTTTTTCACTCCAAGGAATAGGA 283
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 188 GTCAATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGGAGTAGGA 247
Query 284 AGTATCCTAACGCAGCTAGGTCAAGTAGAGGTACTGCAACTGGTTATTGGAAGGCGACAG 343
||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||| |
Sbjct 248 AGTATCCGAACGCAGCTAGGTCAAGTAGAGGAACTGAAACTGGGTATTGGAAGGCGACGG 307
Query 344 GAAAGGATCGAGTCATTGAGTACAATTCAAGATCTGTTGGACTCAAGAAGACTCTTGTTT 403
| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 308 GGAAGGATCGAGTTATTGAGTATAATTCAAGATCGGTTGGACTCAAGAAGACTCTTGTTT 367
Query 404 TCTATAGAGGTCGTGCTCCTAATGGTGAGAGAACTGACTGGGTGATGCATGAGTACACTA 463
||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| || |
Sbjct 368 TCTATAGAGGTCGGGCTCCTAATGGTGAGCGGACTGATTGGGTGATGCATGAGTATACGA 427
Query 464 TGGATGAAGAAGAGCTAGGGAGATGTAAGAACGCTAAGGAGTATTATGCTCTTTATAAGC 523
|||||||||| || |||||||||||||||||| || |||| || |||||||||||||||
Sbjct 428 TGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGATTACTATGCTCTTTATAAGT 487
Query 524 T-TTATAAGAAGAGTGGGGCTGGTCCTAAGAATGGTGAACAGTATGGTGCTCCGTTCCAA 582
| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 488 TGTT-TAAGAAAAGTGGGGCTGGTCCTAAAAATGGTGAACAGTATGGTGCTCCGTTCCAA 546
Query 583 GAAGAAGAATGGGTTGAT-AGTGATAGTGAAGATGCAGATA-G-TGTCGCTGTACCGGAT 639
||||| |||||||||||| | ||||| |||||||| ||| | | | | |||||||||||
Sbjct 547 GAAGAGGAATGGGTTGATGA-TGATAATGAAGATG-AGA-ACGCTATTGCTGTACCGGAG 603
Query 640 TATCCCGTGGTCCGTTATGA-GAATGGTCCTTGTGTGGATGATACTAAA-TTTTGCAATC 697
| || ||||| |||||||| || | || | ||||||||| | | | |||| |||||
Sbjct 604 CAACCTGTGGTTCGTTATGAAGA-TACTCGTCGTGTGGATGGGAGGAGACTTTT-CAATC 661
Query 698 CTGTCAAACTTCAGTTAGAGGATATTGA-GAAGCTTCTCAATGAAATCCCAGATGCACCC 756
|||| | |||||||||||||||||||| || ||||||||||| ||||||| |||||||
Sbjct 662 CTGTTAGTCTTCAGTTAGAGGATATTGATGA-GCTTCTCAATGGAATCCCAAATGCACCT 720
Query 757 GGGGTT 762
||||||
Sbjct 721 GGGGTT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5