BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34190.1
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336483 jgi|Araly1|336483|fgenesh1_pg.C_scaffold_1003048 1519 0.0
Ahg473571 jgi|Araly1|473571|fgenesh2_kg.1__3525__AT1G34180.1 736 0.0
> Ahg336483 jgi|Araly1|336483|fgenesh1_pg.C_scaffold_1003048
Length=1644
Score = 1519 bits (822), Expect = 0.0
Identities = 1022/1113 (92%), Gaps = 35/1113 (3%)
Strand=Plus/Plus
Query 279 ATGGCGGATTCTTCACCCGATTCGTGTTTCAAAGGAGGCAAATTTAGTGCTCCAGGGTTT 338
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGGATTCTTCACCTGATTCGTGTTTCAAAGGAGGCAAATTTAGTGCTCCAGGTTTT 60
Query 339 CGATTTCATCCAACTGATGAAGAGCTTGTGATGTATTATTTGAAGAGGAAGATTTGTAGG 398
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CGATTTCATCCGACTGATGAAGAGCTTGTGATGTATTATCTGAAGAGGAAGATTTGTAGG 120
Query 399 AAGAGGCTTAGAGTTAATGTTATCGGTGTTGTTGATGTTTACAAAATGGATCCTGAGGAA 458
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 121 AAGAGGCTTAGAGTTAATGTTATCGGCGTTGTTGATGTTTATAAAATGGATCCTGAAGAA 180
Query 459 TTGCCTGGTCAATCAATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGG 518
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCCTGGTCAATCGATGTTGAAGACGGGAGATAGACAGTGGTTCTATTTCACTCCAAGG 240
Query 519 AGTAGGAAGTATCCAAACGCAGCTAGGTCTAA-TAGAGGAACTGAAAATGGGTATTGGAA 577
|||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 241 AGTAGGAAGTATCCGAACGCAGCTAGGTC-AAGTAGAGGAACTGAAACTGGGTATTGGAA 299
Query 578 GGCTACAGGGAAGGATCGAGTCATTGAGTATAATTCTAGATCGGTGGGACTTAAAAAGAC 637
||| || |||||||||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 300 GGCGACGGGGAAGGATCGAGTTATTGAGTATAATTCAAGATCGGTTGGACTCAAGAAGAC 359
Query 638 TCTTGTTTTCTATAGAGGCCGGGCTCCTAGTGGTGAGCGGACTGATTGGGTGATGCATGA 697
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TCTTGTTTTCTATAGAGGTCGGGCTCCTAATGGTGAGCGGACTGATTGGGTGATGCATGA 419
Query 698 GTATACGATGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGAGTACTATGCTCT 757
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GTATACGATGGATGAAGATGAACTAGGGAGATGTAAGAACCCTCAGGATTACTATGCTCT 479
Query 758 TTATAAGTTGTTCAAGAAAAGTGGGGCTGGTCCTAAGAATGGTGAACAGTATGGTGCTCC 817
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TTATAAGTTGTTTAAGAAAAGTGGGGCTGGTCCTAAAAATGGTGAACAGTATGGTGCTCC 539
Query 818 GTTTCAAGAAGAGGAATGGGTTGATGATGATAATGAAGATGTGAATGCTATTGCTGTAGC 877
||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 540 GTTCCAAGAAGAGGAATGGGTTGATGATGATAATGAAGATGAGAACGCTATTGCTGTACC 599
Query 878 TGTGCCAGAGCAACCTGTGGTTCGTTATGAGGATGCTCGTCGTGTGGATGAGAGGAGACT 937
| | || |||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 600 -G-G--AG--CAACCTGTGGTTCGTTATGAAGATACTCGTCGTGTGGATGGGAGGAGACT 653
Query 938 TTTTAATCCTGTTATTCTTCAGTTAGAGGATATCGATGAGCTTCTCAATGGAATCCCTAA 997
||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 654 TTTCAATCCTGTTAGTCTTCAGTTAGAGGATATTGATGAGCTTCTCAATGGAATCCCAAA 713
Query 998 TGCACCTGGTGTTCCTCAAAGATGTATTCCTCAGGTGAATAGTGAAGAAGAGCTGCAGAG 1057
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGCACCTGGGGTTCCTCCAAGATGTATTCCTCAGGTGAATAGTGAAGAAGAGCTGCAGAG 773
Query 1058 TACGTTGGTGAATAATTCTGCTAGAGAGTTCTTGCCAAACGGTCAGCAATACAACAGGCC 1117
|| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 774 CACATTGATGAATAATTCTGCTAGAGAGTTCTTGCCAAACGATCAGCCATACAACAGGCC 833
Query 1118 CTCAAGTTTTGACTCATTAGAGACCGCTGAGGTCAC--C---TC--A-G-C-TC------ 1161
||||||||||||||||||||||||||||||||||| | || | | | ||
Sbjct 834 TTCAAGTTTTGACTCATTAGAGACCGCTGAGGTCACGTCAGCTCCCAAGACCTCTGGTAT 893
Query 1162 --C---TCTGGTGTTTGAGAAGGAAGATTTCATTGAAATGGATGATCTTCTTCTGATCCC 1216
| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 894 AGCACCTCTGGTGTTTGAGAAGGAGGATTACATTGAAATGGATGATCTTCT---GATCCC 950
Query 1217 TGAA-TTCGGAGCTTCTTCAACTGAGAAAGCCGCACAGTTCTCGAACCATGGTGAATTCG 1275
|||| || |||||||| ||||| |||||||| | |||||| ||||||||||||| |||||
Sbjct 951 TGAACTT-GGAGCTTCCTCAACCGAGAAAGCTGTACAGTTATCGAACCATGGTGGATTCG 1009
Query 1276 ACGATTTTAATGAGTTTGACCAATTGTTCCATGACGTTTCCATGTCTTTGGATATGGAAC 1335
||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1010 GCGATTTTGACGAGTTTGACCAATTGTTCCATGATGTTTCCATGTCTTTGGATATGGAAC 1069
Query 1336 CTATTGATCAGGGAACTTCTGCAAATCTGTCTT 1368
|||||||||||||| ||||| | |||||||||
Sbjct 1070 CTATTGATCAGGGA-CTTCTACGGATCTGTCTT 1101
Score = 797 bits (431), Expect = 0.0
Identities = 503/538 (93%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 1410 CAACTCCTTTATCAACAGTTCCAGGACCAGACTCCCGAGAACCAGCTGAACAACATCATG 1469
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1108 CAATTCCTTTATCAACAGTTCCAGGACCAGACTCCCGAGAACCAGCTGGACAACATCACG 1167
Query 1470 GATCCTAGTACAACTCTCAATCAAATCACTAGCGATATTTGGTTCGAGGATGATCAGGCC 1529
|||||||||||||| ||| ||||| |||||| |||||| |||||| | |||||||| |||
Sbjct 1168 GATCCTAGTACAACCCTCGATCAATTCACTAACGATATATGGTTCCAAGATGATCAAGCC 1227
Query 1530 ATTCTATTTGATCAACAACAATCCTTTTCTGGAGCATTTGCTTCACCCTCATCAGGTGTG 1589
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1228 ATTCTCTTTGATCAACAACAATCTTTTTCTGGAGCATTTGCTTCACCCTCATCAGGTGTA 1287
Query 1590 ATGCCTGATTCCACCAATCCTACTATGAGTGTGAATGCCCAAGGCCATGAA-ATCCAAAA 1648
||||| ||||| ||||||||| ||||||||||||||||||||||||| ||| | ||||||
Sbjct 1288 ATGCCCGATTCTACCAATCCTTCTATGAGTGTGAATGCCCAAGGCCAGGAACA-CCAAAA 1346
Query 1649 TGGTGGTGGAACAACAAGCCAGTTCTCATCGGCTTTGTGGGCATTAATGGACTCAATACC 1708
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1347 TGGTGGTGGACCAACTAGCCAGTTCTCATCGGCTCTGTGGGCATTAATGGACTCAATACC 1406
Query 1709 TTCAACGCCAGCCTCTGCGTGTGAGGGTCCCCTTAACCGAACCTTTGTACGTATGTCTAG 1768
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1407 TTCAACGCCAGCCTCTGCGTGTGAGGGTCCTCTTAACCGAACCTTTGTACGTATGTCTAG 1466
Query 1769 CTTCAGCCGTATGAGGTTCAATGGAAAGGCTAATGGAACGCCAGTGAGTACTACCATAGC 1828
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1467 TTTCAGCCGTATGAGGTTCAATGGAAAGGCTAATGTAACGCCAGTGACTACTACCATAGC 1526
Query 1829 AAAGAAGGGTATTAGAAACAGAGGTTTTCTTCTATTATCAATCGTGGGTGCTTTGTGTGC 1888
|||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1527 AAAGAAAGGTATCAGAAACAGAGGTTTTCTTCTCTTATCAATCGTGGGTGCCTTGTGTGC 1586
Query 1889 CATCTTCTGGGTGTTGGTAGCCACAGTTCGAGTCTCAGGTAGAA--GTCTTCTCTTGA 1944
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1587 CATCTTCTGGGTGTTCATAGCCACAGTTCGAGTCTCAGGTAGAAACGTCTTCTCTTGA 1644
> Ahg473571 jgi|Araly1|473571|fgenesh2_kg.1__3525__AT1G34180.1
Length=1984
Score = 736 bits (398), Expect = 0.0
Identities = 647/763 (85%), Gaps = 33/763 (4%)
Strand=Plus/Plus
Query 268 TTGTTACGTAGATGGCGGATTCTTCACCCGATTCGTGTTTCAAAGGAGGCAAATTTAGTG 327
|||||||| |||||| |||||||| || |||||||||||||||| || || ||||| |
Sbjct 119 TTGTTACGGAGATGGTTGATTCTTCTCCTGATTCGTGTTTCAAAGCTGGTAAGTTTAGCG 178
Query 328 CTCCAGGGTTTCGATTTCATCCAACTGATGAAGAGCTTGTGATGTATTAT-TTGAAGAGG 386
||||||| ||||||||||| || |||||||||||||||||| | |||||| || ||||||
Sbjct 179 CTCCAGGTTTTCGATTTCACCCGACTGATGAAGAGCTTGTGGTTTATTATCTT-AAGAGG 237
Query 387 AAGA--T-TTGTAGGAAGAGGCTTAGAGTTAATGTTATCGGTGTTGTTGATGTTTACAAA 443
|||| | ||||| ||| | |||||||| || | || ||||| |||||||| ||||||
Sbjct 238 AAGATCTGTTGTA-GAA-A-ACTTAGAGTCAACGCCATTGGTGTCGTTGATGTCTACAAA 294
Query 444 ATGGATCCTGAGGAATTGCCTGGTCAATCAATGTTGAAGACGGGAGATAGACAGTGGTTC 503
| |||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 295 GTCGATCCTTCTGAATTGCCTGGTCTATCGATGTTGAAGACGGGAGATCGACAGTGGTTC 354
Query 504 TATTTCACTCCAAGGAGTAGGAAGTATCCAAACGCAGCTAGGTCTAA-TAGAGGAACTGA 562
| |||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||
Sbjct 355 TTTTTCACTCCAAGGAATAGGAAGTATCCAAACGCAGCTAGGTC-AAGCAGAGGTACTGC 413
Query 563 AAATGGGTATTGGAAGGCTACAGGG-AAGGATCGAGTCATTGAGTATAATTCTAGATCGG 621
| ||||||||||||||| || ||| |||||||||||||||||||| ||||| |||||||
Sbjct 414 TACTGGGTATTGGAAGGCAAC-GGGAAAGGATCGAGTCATTGAGTACAATTCCAGATCGG 472
Query 622 TGGGACTTAAAAAGACTCTTGTTTTCTATAGAGGCCGGGCTCCTAGTGGTGAGCGGACTG 681
| ||||| || ||||||||||||||||||||||| |||||||||| ||||||||| ||||
Sbjct 473 TTGGACTCAAGAAGACTCTTGTTTTCTATAGAGGTCGGGCTCCTAATGGTGAGCGAACTG 532
Query 682 ATTGGGTGATGCATGAGTATACGATGGATGAAGATGAACTAGGGAGATGTAAGAAC-CCT 740
| ||||||||||| ||||| |||||||||||||| || || ||||||||||||||| ||
Sbjct 533 ACTGGGTGATGCACGAGTACACGATGGATGAAGAAGAGCTCGGGAGATGTAAGAACGCC- 591
Query 741 CAGGAGTACTATGCTCTTTATAAGTTGTTCAAGAAAAGTGGGGCTGGTCCTAAGAATGGT 800
||||||| ||||||||||||||| ||| ||||||||||||||||||||| || ||||||
Sbjct 592 AAGGAGTATTATGCTCTTTATAAGCTGTACAAGAAAAGTGGGGCTGGTCCCAAAAATGGT 651
Query 801 GAACAGTATGGTGCTCCGTTTCAAGAAGAGGAATGGGTTGAT-GATGATAATGAAGATGT 859
||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||
Sbjct 652 GAACAGTATGGTGCTCCGTTTCAAGAAGAAGAATGGGTTGATAG-TGATAGTGAAGATGC 710
Query 860 GAATGCTATTGCTGTAGCTGTGCCAGAGCAACCTGTGGTTCGTTATGAGGAT-GCTCGTC 918
| | || || | | ||||| || || | |||||||||||||||||| | | |||||
Sbjct 711 -A--GATAATG-T-T-GCTGTACCGGATTATCCTGTGGTTCGTTATGAGAACAG-TCGTC 763
Query 919 GTGTGGATGAGAGGAGACTTTTT-AATCCTGTTATTCTTCAGTTAGAGGATATCGATGA- 976
||| |||| | | | | |||| |||||||| | ||||||||||||||||||||| ||
Sbjct 764 GTGCGGATAATATTAAA-TTTTCCAATCCTGTCAATCTTCAGTTAGAGGATATCGA-GAA 821
Query 977 GCTTCTCAATGGAA-TCCCTA-ATGCACCTGGTGTTC-CTCAA 1016
||||||||||| || |||| | ||||||| || ||| |||||
Sbjct 822 GCTTCTCAATG-AAGTCCC-AGATGCACCCGGGGTTAACTCAA 862
Score = 658 bits (356), Expect = 0.0
Identities = 635/766 (83%), Gaps = 34/766 (4%)
Strand=Plus/Plus
Query 1170 TTTGAGAAGGA--A-GATTTCATTGAAATGGATGATCTTCTTCTGATCCCTGAATTCGGA 1226
||||||||||| | || | ||||||||||||||| |||||||||||||||| |||||
Sbjct 1081 TTTGAGAAGGAGGAGGACTACATTGAAATGGATGA---TCTTCTGATCCCTGAACTCGGA 1137
Query 1227 GCTTCTTC-AACTGAGAAAGCCGCACAGTTCTCGA-ACCATGGTGAATTCGACGATTTTA 1284
||||| || |||||||||| || || |||||| || | || |||||||| | ||| |||
Sbjct 1138 GCTTC-TCTAACTGAGAAATCCACAGAGTTCTTGAGA-CACGGTGAATTTGGTGATGTTA 1195
Query 1285 ATGAGTTTGACCAATTGTTCCATGACGTTTC-CATGTCTTTGGATATGGAACCTATTGAT 1343
|||| | ||||||||||||||||||| ||| | ||||||||| || || ||| || |
Sbjct 1196 ATGAATATGACCAATTGTTCCATGAC-ATTCTCGTGTCTTTGG--AT-GACCCTGTTTTT 1251
Query 1344 CAGGGAACTTCTGCAAATCTGTCTTCTCTGAGTGATTCTGCTAACT-ACACATCAGACCA 1402
|||||||||||| |||||||||||||||||||| ||| | |||| | |||||||||||||
Sbjct 1252 CAGGGAACTTCTACAAATCTGTCTTCTCTGAGTAATTTTACTAA-TAACACATCAGACCA 1310
Query 1403 AAAACAGCAACT-CCTTTATCAACAGTTCCAGGACCAGACTCCC-GAGAACCAGCTGAAC 1460
| ||||||| | |||| |||||||||| ||| ||||| | ||| ||||||||||||||
Sbjct 1311 GAGACAGCAA-TACCTTAATCAACAGTTTCAGTACCAGGC-CCCTGAGAACCAGCTGAAT 1368
Query 1461 AACATCATGGATCCTAGTACAACTCTCAATCAAATCACTAG-CGATATTTGGTTCGAGGA 1519
||| ||||| |||||||||| ||| | ||||| ||||| | | |||| ||||| | ||
Sbjct 1369 AACTTCATGTATCCTAGTACCACTATTAATCAGTTCACT-GACAATATGTGGTTTAAAGA 1427
Query 1520 TGATCAGGCCATTCTATTTGATCAACAACAATCCTT-TTCTGGAGCATTTGCTTCACCCT 1578
||||||||| ||| |||| ||||| ||||| ||| |||||||||||| ||||||| |
Sbjct 1428 TGATCAGGCTGCTCTCTTTGTTCAACCACAAT-CTTCTTCTGGAGCATTCGCTTCACAGT 1486
Query 1579 CATCAGGTGTGATGCCTGATTCCACCAATCCTACTATGAGTGTGAATGCCCAAGGCCATG 1638
|| |||||||||||||||| || | ||||| ||||||||||| ||| |||||| | | |
Sbjct 1487 CAACAGGTGTGATGCCTGAGTCTATGAATCCCACTATGAGTGTAAATCCCCAAGACAAGG 1546
Query 1639 AAATCCAAAATGGTGGTGGAACAACAAGCCAGTTCTCATCGGCTTTGTGGGCATTAATGG 1698
|| |||||||||||||||||||| |||||||||||||| ||| |||||| |||| |||
Sbjct 1547 AAGGCCAAAATGGTGGTGGAACAAGGAGCCAGTTCTCATCAGCTCTGTGGGAATTATTGG 1606
Query 1699 ACTCAATACCTTCAACGCCAGCCTCTGCGTGTGAGGGTCCCCTTAACCGA-ACCTTTGTA 1757
| |||||||| ||||| ||||||||||| ||||||||||| ||||||| | ||||||||
Sbjct 1607 AATCAATACCATCAACACCAGCCTCTGCCTGTGAGGGTCCTCTTAACC-AGACCTTTGTG 1665
Query 1758 CGTATGTCTAGCTTCAGCCGTATGAGGTTCAATGGAAAGGCTAATGGAACGCCAGT-GAG 1816
|||||||||||||||||||| || ||||||||||||| | | | | | || ||| ||
Sbjct 1666 CGTATGTCTAGCTTCAGCCGGATCAGGTTCAATGGAACGTC-AGT-G---GCTAGTAGAA 1720
Query 1817 TACT-ACCATAGCAAAGAAGGGTATTAGAAACAGAGGTTTTCTTCTATTATCAATCGTGG 1875
| | || ||||||||||| |||| || ||||||||||||||||| |||||||| |||
Sbjct 1721 AAGTCACTTTAGCAAAGAAGCGTATCAGTAACAGAGGTTTTCTTCTGTTATCAATTATGG 1780
Query 1876 GTGCTTTGTGTGCCATCTTCTGGGTGTTGGTAGCCACAGTTCGAGT 1921
|||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1781 GTGCTTTGTGTGCCATCTTCTGGGTGTTCATAGCCACAGTTGGAGT 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82046387730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5