BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34200.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336484 jgi|Araly1|336484|fgenesh1_pg.C_scaffold_1003049 1524 0.0
> Ahg336484 jgi|Araly1|336484|fgenesh1_pg.C_scaffold_1003049
Length=1059
Score = 1524 bits (825), Expect = 0.0
Identities = 983/1061 (93%), Gaps = 4/1061 (0%)
Strand=Plus/Plus
Query 86 ATGTCCGGTGATAACCAGATCCGAATCGGACTCTTAAGCTGCACAAACAAAGTCCGCAAA 145
|||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 1 ATGTCCGGCGATAACCAGATCCGATTCGGACTCTTAACCTGCAAAAACATAGTCCGCAAA 60
Query 146 CTCTCTCGAGCTATAAATCTCTCTCCAAACGCTACTATATCCGCCATAGCCACCACAAGC 205
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 61 CTCTCTCGAGCCATAAACCTCTCTCCAAACGCTACCATCTCCGCCATAGCCACCACAAGC 120
Query 206 TCCATCGAAGAAGCAAAATCATTTGCTAAATCCAACAATTTCCCTCCGAATACAAA-ACT 264
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 121 TCCATCGAAGAAGCAAAATCATTTACTAAATCCAACAATTTCCCTCCGAATACAAAGA-T 179
Query 265 CCACAGCTCCTACGAGTCACTTCTAGAAGATCCCGACGTCGACGCCGTCTATTTCCCTAT 324
|||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCACATCTCCTACGATTCACTTCTAGAAGATCCCGACGTTGACGCCGTCTATTTCCCTAT 239
Query 325 CCCCACTCGCCTCCACGTCGAGTGGGCTACACTCGCCGCTATTAAGGGTAAACATATACT 384
|||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 240 CCCCACTCGCCTCCACCTCGAGTGGGCTACACGCGCCGCTCGTAAGGGTAAGCATATACT 299
Query 385 CCTTGATAAGCCTGTTGCTTTAAACGTAGCTGAGTTTGATCAGATCGTTGAAGCTTGTGA 444
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CCTTGATAAGCCAGTTGCTTTAAACGTATCTGAGTTTGATCAGATCGTTGAAGCTTGTGA 359
Query 445 GGTTAATGGTGTTCAATTTATGGATGGAACTCAGTGGATGCATAGCCCTAGAACGGATAA 504
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 360 GGTTAATGGTGTTCAATTTATGGATGGAACTCAGTGGATTCATAATCCTAGAACGTATAA 419
Query 505 GATTAAAGAATTTGTGAATGATTTAGAGAGTTTTGGTCAGATTAAATCTGTGTATAGTTG 564
|||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct 420 GATTAAGGAATTTGTCAACGATTTTGAGAGTTTTGGTCAGATTAAATCTGTACATAGTTG 479
Query 565 TTTCTCATTTGCTGCGAGTGATGATTTCTTAAAACATGATATTCGTGTAAAGCCTGGTCT 624
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTCTCATTTGCAGCGAATGATGATTTCTTAAAACATGATATTCGTGTAAAGCCTGGTCT 539
Query 625 TGATGGACTTGGAGCTCTCGGTGATGCTGGATGGTATACGATCCAAGCGATTCTTCTTGT 684
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TGATGGGCTTGGAGCTCTTGGTGATGCTGGATGGTATACGATTCAAGCGATTCTTCTTGC 599
Query 685 TAACAACTTTAAACTTCCGAAGACCGTTACTGCTTTGTCCGGTTCTGTTTTAAACGATGC 744
||| |||||||||||||||| |||||||||||||| |||||| ||| ||||||||||
Sbjct 600 CAACGACTTTAAACTTCCGAAAACCGTTACTGCTTTACCCGGTTATGTGTTAAACGATGT 659
Query 745 GGGGATTGTTCTTTCTTGTGGTGCGTTGTTTGATTGGGAAGATGGGGTCAA-TGCAACGA 803
||| || ||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct 660 GGGAATCGTTCTTTCTTGTGGTGCGTTGTTTGATTGGGAAGAAGGGAT-AAGTGCAACGA 718
Query 804 TTTACTGTTCTTTCTTGGCGAATTTGACGATGGAGATAACTGCGATCGGTACGAAAGGTA 863
| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 719 TGTACTGTTCTTTTTTGGCGAATTTAACTATGGAGATAACTGCGATTGGTACGAAAGGTA 778
Query 864 GTCTTCGTGTTCATGATTTTGTTATACCGTATATGGAAACCGAGGCTGTGTTTACTACAA 923
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
Sbjct 779 CTCTTCGTGTTCATGATTTTGTTATACCGTATCGGGAAACCGAGGCTGCGTTTACTACGA 838
Query 924 GTGGTGGAGGTTGTGTTAGTGAACATAAAGTAATGACTGAGCTTTCACAAGAGGCGTGTA 983
||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 839 GTGCTAGAGGTTGTGTTAGTGAGCATAAAGTTATGACTGAGCTTCCACAAGAGGCGTGTA 898
Query 984 TGGTTATGGAATTTGCTCGGTTGGTTGGAGAAATCAAAAACAGAGGAGCTAAACCGGATG 1043
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGTTATAGAGTTTGCTCGGTTGGTTGGAGAAATCAAAAACAGAGGAGCTAAACCGGATG 958
Query 1044 GGTTTTGGATGAGGTTTAGCCGGAATACGCAGTTGCTTGTTGATGCTGTGAAAGAGTCGA 1103
|||||||| |||| |||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 959 GGTTTTGGTTGAGCATTAGCCGGAAGACGCAGCTGCTTGTTGATGCCGTGAAAGAGTCGA 1018
Query 1104 TTGATAATAACCTTGAACCGGTGTTTCTCTCCGGCCGGTGA 1144
|||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1019 TTGATAGTAACCTTGAACCGGTTTTTCTCTCCGGCCGGTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5