BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34210.1
Length=2448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913250 jgi|Araly1|913250|Al_scaffold_0001_3504 2734 0.0
Ahg926538 jgi|Araly1|926538|scaffold_202099.1 1332 0.0
> Ahg913250 jgi|Araly1|913250|Al_scaffold_0001_3504
Length=1845
Score = 2734 bits (1480), Expect = 0.0
Identities = 1598/1657 (96%), Gaps = 0/1657 (0%)
Strand=Plus/Plus
Query 639 CGATCTTGGGAATGCAGACTTGTCTGGTCAGTTGGTTCCTCAGCTAGGTCAGCTCAAGAA 698
|||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 189 CGATCTCGGGAATGCAGACTTGTCTGGTCAATTGGTTCCTCAGCTTGGCCAGCTCAAGAA 248
Query 699 CTTGCAGTACTTGGAGCTTTATAGTAATAACATAACCGGGCCGGTTCCAAGCGATCTTGG 758
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 249 CTTGCAGTACTTGGAGCTTTACAGTAATAACATAACCGGGCCGGTTCCAAGTGATCTTGG 308
Query 759 GAATCTGACAAACTTAGTGAGCTTGGATCTTTACTTGAACAGCTTCACTGGTCCAATTCC 818
|||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 309 GAATCTGACAAACTTAGTGAGCTTGGATCTTTACCTAAACAGATTCACTGGTCCAATTCC 368
Query 819 AGATTCTCTAGGAAAGCTATTCAAGCTTCGCTTTCTTCGGCTCAACAATAACAGTCTCAC 878
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGACTCTCTGGGAAAGCTATTCAAGCTTCGCTTTCTTCGGCTCAACAATAACAGTCTCAC 428
Query 879 CGGACCAATTCCCATGTCATTGACTAATATCATGACCCTTCAAGTTTTGGATCTGTCGAA 938
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 429 CGGACCAATTCCCATGTCATTGACTAATATCACGTCTCTTCAAGTTTTGGATCTGTCGAA 488
Query 939 CAACCGATTATCCGGATCTGTTCCTGATAATGGTTCCTTCTCGCTCTTCACTCCCATCAG 998
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CAACCGATTATCTGGATCTGTTCCTGATAATGGTTCCTTCTCGCTCTTCACTCCCATCAG 548
Query 999 TTTTGCTAACAACTTGGATCTATGCGGCCCAGTTACTAGCCGTCCTTGTCCTGGATCTCC 1058
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 549 TTTTGCTAACAACTTGGATCTATGCGGTCCAGTTACTAGCCGTCCTTGCCCTGGATCTCC 608
Query 1059 CCCGTTTTCTCCTCCACCACCTTTTATACCACCTCCCATAGTTCCTACACCAGGTGGGTA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCCGTTTTCTCCTCCACCACCTTTTATACCACCTCCCATAGTTCCTACACCAGGTGGGTA 668
Query 1119 TAGTGCTACTGGAGCCATTGCGGGAGGAGTTGCTGCTGGTGCTGCTTTACTATTTGCTGC 1178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 669 TAGTGCTACTGGAGCCATTGCGGGAGGAGTTGCTGCTGGTGCTGCTTTGCTATTTGCTGC 728
Query 1179 CCCTGCTTTAGCTTTTGCTTGGTGGCGTAGAAGAAAACCTCAAGAATTCTTCTTTGATGT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CCCTGCTTTAGCTTTTGCTTGGTGGCGTAGAAGAAAACCTCAAGAATTCTTCTTTGATGT 788
Query 1239 TCCTGCCGAAGAGGACCCTGAGGTTCACTTGGGGCAGCTTAAGCGGTTCTCTCTACGGGA 1298
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 789 TCCTGCTGAAGAGGACCCTGAAGTTCACTTGGGGCAGCTTAAGCGGTTCTCTCTACGGGA 848
Query 1299 ACTTCAAGTAGCAACTGATAGCTTCAGCAACAAGAACATTTTGGGCCGAGGTGGGTTCGG 1358
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 849 ACTTCAAGTAGCAACAGATAGCTTCAGCAACAAGAACATCTTGGGCCGAGGTGGGTTTGG 908
Query 1359 AAAAGTCTACAAAGGCCGTCTTGCTGATGGAACACTTGTTGCAGTCAAACGGCTTAAAGA 1418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 909 AAAAGTCTACAAAGGCCGTCTTGCTGATGGAACACTTGTCGCAGTCAAACGGCTTAAAGA 968
Query 1419 AGAGCGAACCCCAGGTGGCGAGCTCCAGTTTCAGACAGAAGTGGAGATGATAAGCATGGC 1478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AGAGCGCACCCCAGGTGGCGAGCTCCAGTTTCAGACAGAAGTGGAGATGATAAGCATGGC 1028
Query 1479 CGTTCACAGAAATCTCCTCAGGCTACGCGGTTTCTGTATGACCCCTACCGAGAGATTGCT 1538
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1029 CGTTCACAGAAATCTTCTCAGGCTACGCGGTTTTTGTATGACCCCTACCGAGAGATTGCT 1088
Query 1539 TGTTTATCCTTACATGGCTAATGGAAGTGTCGCTTCCTGTTTGAGAGAACGTCCACCATC 1598
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1089 TGTTTATCCTTACATGGCTAACGGAAGTGTAGCTTCCTGTTTGAGAGAACGTCCACCATC 1148
Query 1599 ACAGTTGCCTCTAGCCTGGTCAATAAGACAGCAAATCGCGCTAGGATCAGCGAGGGGTTT 1658
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GCAGTTGCCTCTAGCCTGGCCAATAAGACAGCAAATCGCGCTAGGATCAGCGAGGGGTTT 1208
Query 1659 GTCTTATCTTCATGATCATTGCGACCCCAAAATTATTCACCGTGATGTGAAAGCTGCTAA 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GTCTTATCTTCATGATCATTGCGACCCCAAAATTATTCACCGTGATGTGAAAGCTGCTAA 1268
Query 1719 TATTCTGTTGGACGAGGAATTTGAGGCGGTGGTAGGTGATTTCGGGTTAGCTAGACTTAT 1778
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1269 TATTCTGTTGGACGAGGAATTTGAGGCGGTGGTAGGCGATTTCGGGTTGGCTAGGCTTAT 1328
Query 1779 GGACTATAAAGATACTCATGTCACAACGGCTGTGCGTGGGACTATTGGACACATTGCTCC 1838
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1329 GGATTATAAAGATACACATGTCACAACGGCTGTGCGTGGGACTATTGGACATATTGCTCC 1388
Query 1839 TGAGTATCTCTCAACTGGAAAATCTTCAGAGAAAACTGATGTTTTTGGCTACGGGATCAT 1898
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1389 CGAGTATCTCTCAACTGGAAAATCTTCAGAGAAAACCGATGTTTTTGGCTACGGGATCAT 1448
Query 1899 GCTTTTGGAACTGATTACAGGTCAGAGAGCTTTTGATCTTGCAAGACTGGCGAATGACGA 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1449 GCTTTTGGAACTGATTACAGGTCAGAGAGCTTTTGATCTTGCAAGACTGGCGAATGATGA 1508
Query 1959 TGACGTTATGCTCCTAGATTGGGTGAAAGGGCTTTTGAAGGAGAAGAAGCTGGAGATGCT 2018
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1509 TGACGTTATGCTCCTAGATTGGGTAAAAGGGCTTTTGAAGGAGAAGAAACTGGAGATGCT 1568
Query 2019 TGTGGATCCTGACCTGCAAAGCAATTACACAGAAGCAGAAGTAGAACAGCTCATACAAGT 2078
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1569 TGTGGATCCTGATCTGCAGAGCAACTACACAGAAGCAGAAGTAGAACAGCTCATACAAGT 1628
Query 2079 GGCTCTTCTCTGCACACAGAGCTCACCTATGGAACGACCTAAGATGTCTGAGGTTGTTCG 2138
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1629 GGCTCTTCTCTGCACACAGAGCTCACCTATGGAAAGACCTAAGATGTCTGAGGTTGTTCG 1688
Query 2139 AATGCTTGAAGGTGACGGTTTAGCGGAGAAATGGGACGAGTGGCAGAAAGTGGAAGTTCT 2198
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1689 AATGCTTGAAGGTGACGGTTTAGCTGAGAAATGGGACGAGTGGCAGAAAGTAGAAGTTTT 1748
Query 2199 CAGGCAAGAAGTGGAGCTCTCTTCTCACCCCACCTCTGACTGGATCCTTGATTCGACTGA 2258
|||||| || |||||||| ||||||||||||||||| || |||||||| ||||| || ||
Sbjct 1749 CAGGCAGGAGGTGGAGCTGTCTTCTCACCCCACCTCCGATTGGATCCTCGATTCTACGGA 1808
Query 2259 TAATCTTCATGCTATGGAGTTGTCTGGTCCAAGATAA 2295
||||||||||||| | |||||||||||||||||||||
Sbjct 1809 TAATCTTCATGCTGTTGAGTTGTCTGGTCCAAGATAA 1845
Score = 309 bits (167), Expect = 6e-83
Identities = 181/188 (96%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 409 ATGGGGAGAAAAAAGTTTGAAGCTTTTGGTTTTGTCTGCTTAATCTCACTGCTTCTTCTG 468
|||||||||||||||||||||||||||||| |||||||||||||||| || || |||||
Sbjct 1 ATGGGGAGAAAAAAGTTTGAAGCTTTTGGTCTTGTCTGCTTAATCTCGTTGGTTTTTCTG 60
Query 469 TTTAATTCGTTATGGCTTGCCTCTTCTAACATGGAAGGTGATGCACTGCACAGTTTGAGA 528
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTTAATTCATTATGGCTTGCCTCTTCTAACATGGAAGGTGATGCACTTCACAGTTTGAGA 120
Query 529 GCTAATCTAGTTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTAATCTAGTTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCG 180
Query 589 TGTACTTG 596
||||||||
Sbjct 181 TGTACTTG 188
> Ahg926538 jgi|Araly1|926538|scaffold_202099.1
Length=1920
Score = 1332 bits (721), Expect = 0.0
Identities = 1483/1848 (80%), Gaps = 64/1848 (3%)
Strand=Plus/Plus
Query 481 TGGCTTGCCTCTTCTAACATGGAAGGTGATGCACTGCACAGTTTGAGAGCT-AATCTAGT 539
|||||||| ||| |||| ||||||||||||| |||| | |||||| | | | ||||||
Sbjct 84 TGGCTTGCTTCTGCTAATTTGGAAGGTGATGCTTTGCATACTTTGAG-GGTCACTCTAGT 142
Query 540 TGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTT 599
|||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct 143 TGATCCGAACAATGTCTTGCAGAGCTGGGATCCTACGCTTGTGAATCCTTGTACATGGTT 202
Query 600 TCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTCGATCTT-GGGAATGCAGACT 658
||||| || || ||||||||||||||||| || ||||| ||| || || |||||||| |
Sbjct 203 CCACGTCACTTGCAACAACGAGAACAGTGTCATTAGAGTTGAT-TTAGGAAATGCAGAGT 261
Query 659 TGTCTGGTCAGTTGGTTCCTCAGCTAGGTCAGCTCAAGAACT-TGCAGTACTTGGAGCTT 717
||||||| || || ||||| |||| ||| ||||||||| | ||||||| |||||||||
Sbjct 262 TGTCTGGCCATTTAGTTCCGGAGCTTGGTGTGCTCAAGAA-TCTGCAGTATTTGGAGCTT 320
Query 718 TATAGTAATAACATAACCGGGCCGGTTCCAAGCGATCTTGGGAATCTGACAAACTTAGTG 777
|| ||||| || ||||| || || |||| || ||||||| |||||||| |||||||||
Sbjct 321 TACAGTAACAATATAACTGGCCCAATTCCTAGTAATCTTGGAAATCTGACGAACTTAGTG 380
Query 778 AGCTTGGATCTTTACTTGAACAGCTTCACTGGTCCAATTCCAGATTC-TCTAGGAAAGCT 836
||||||||||||||||| ||||||||||||||||| || || || || | | ||||||||
Sbjct 381 AGCTTGGATCTTTACTTAAACAGCTTCACTGGTCCTATCCCTGAATCAT-TGGGAAAGCT 439
Query 837 ATTC-AAGCTTCGCTTTCTTCGGCTCAACAATAACAGTCTCACCGGACCAATTCCCATGT 895
||| ||||| | ||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct 440 -TTCAAAGCTGAGGTTTCTCCGGCTGAACAACAACAGTCTCACTGGGTCAATTCCCATGG 498
Query 896 CATTGACTAATATCA-TGACCCTTCAAGTTTTGGATCTGTCGAACAACCGATTATCCGGA 954
|| |||||||||||| | ||||||||||| || ||||| || || |||||| | || ||
Sbjct 499 CACTGACTAATATCACT-ACCCTTCAAGTGTTAGATCTATCAAATAACCGACTCTCTGGT 557
Query 955 TCTGTTCCTGATAATGGTTCCTTCTCGCTCTTCACTCCCATCAGTTTTGCTAACAACTTG 1014
|| |||||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||
Sbjct 558 TCAGTTCCTGACAATGGCTCCTTCTCACTCTTCACACCCATCAGTTTTGCTAATAACTTA 617
Query 1015 GATCTATGCGGCCCAGTTACTAGCCGTCCTTGTCCTGGATCTCCCCCGTTTTCTCCTCCA 1074
|| ||||| || || ||||| || | || |||||||||||||||||||||||||||||
Sbjct 618 GACCTATGTGGACCTGTTACAAGTCACCCATGTCCTGGATCTCCCCCGTTTTCTCCTCCG 677
Query 1075 CCACCTTTTATACCACCTCC-CATAGTT-CCTACACCAGGTGGGTATAGTGCTA-CTGGA 1131
||||||||||| |||||||| | |||| || || ||| |||| ||| || || |||||
Sbjct 678 CCACCTTTTATTCCACCTCCACC-AGTTTCC-ACCCCAAGTGGATATGGTA-TAACTGGA 734
Query 1132 GCCATTGCGGGAGGAGTTGCTGCTGGTGCTGCTTTACTATTTGCTGCCCCTGCTTTAGCT 1191
|| || || || ||||||||||| ||||||||||| || |||||||| ||||| ||||
Sbjct 735 GCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTGTTTGCTGCTCCTGCAATAGCC 794
Query 1192 TTTGCTTGGTGGCGTAGAAGAAAACCTCAAGA-ATTCTTCTTTGATGTTCCTGCCGAAGA 1250
|||||||||||||| |||||||||| | ||| ||| ||||| ||||| |||||||||||
Sbjct 795 TTTGCTTGGTGGCGGCGAAGAAAACCACTAGATATT-TTCTTCGATGTGCCTGCCGAAGA 853
Query 1251 GGACCCTGAGGTTCA-CTTGGGGCAGCTTAAGCGGTTCTCTCTACGGGAACTTCAAGTAG 1309
|| || |||||||| || ||| ||||| ||| |||| ||| ||||||| || ||||| |
Sbjct 854 AGATCCAGAGGTTCATCT-GGGACAGCTCAAGAGGTTTTCTTTACGGGAGCTACAAGTGG 912
Query 1310 CAACTGATAGCTTCAGCAACAAGAACATTTTGGGCCGAGGTGGGTTCGGAAAAGTCTACA 1369
| | |||| | || || |||||||| |||||||| |||| |||||||| ||||||||||
Sbjct 913 CGAGTGATGGATTTAGTAACAAGAATATTTTGGGTAGAGGCGGGTTCGGGAAAGTCTACA 972
Query 1370 AAGGCCGTCTTG-CTGATGGAACACTTGTTGCAGTCAA-ACGGCTTAAAGAAGAGCGAAC 1427
| || ||| ||| | || ||||| |||||||| ||||| | | || || |||||||||||
Sbjct 973 AGGGACGT-TTGGCAGACGGAACTCTTGTTGCTGTCAAGA-GACTGAAGGAAGAGCGAAC 1030
Query 1428 CCCAGGTGGCGAGCTCCAGTTTCAGACAGAAGTGGAGATGATAAGCATGGCCGTTCA-CA 1486
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 1031 TCCAGGTGGAGAGCTCCAGTTTCAGACAGAAGTAGAGATGATAAGTATGGCAGTTCATC- 1089
Query 1487 GAAATCTCCTCAGGCTACGCGGTTTCTGTATGACCCCTACCGAGAGATTGCTTGTTTATC 1546
|||| || | || |||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 1090 GAAACCTGTTGAGATTACGAGGTTTCTGTATGACACCGACCGAGAGATTGCTCGTGTATC 1149
Query 1547 CTTACATGGCTAATGGAAGTGTCGCTTCCTGTTTGAGAGA-ACGTCCACCATCACAGT-T 1604
|||||||||| || ||||| || || || ||| | ||||| | | ||||| |||||| |
Sbjct 1150 CTTACATGGCCAACGGAAGCGTTGCGTCGTGTCTCAGAGAGAGG-CCACCGTCACAGCCT 1208
Query 1605 GCCTCTAGCCTGGTCAATAAG-ACAGCA-AATCGCGCTAGGATCAGCGAGGGGTTTGTCT 1662
|| || | ||| ||| | | || | |||||||||||| ||||| | |||||||||
Sbjct 1209 -CCACTCGATTGGCCAACGCGGA-AG-AGAATCGCGCTAGGCTCAGCTCGCGGTTTGTCT 1265
Query 1663 TATCTTCATGATCATTGCGACCCCAAAATTATTCACCGTGATGTGAAAGCTGCTAATATT 1722
|| || || ||||| ||||| || || || ||||||||||| || ||||| || || ||
Sbjct 1266 TACCTACACGATCACTGCGATCCGAAGATCATTCACCGTGACGTAAAAGCAGCAAACATC 1325
Query 1723 CTGTTGGACGAGGAATTTGAGGCGGTGGTAGGTGATTTCGGGTTAGCTA-GACTTATGGA 1781
|| || ||||| ||||| || ||||| || || ||||||||||| || | | || |||||
Sbjct 1326 CTCTTAGACGAAGAATTCGAAGCGGTTGTTGGAGATTTCGGGTTGGCGAAG-CTAATGGA 1384
Query 1782 CTATAAAGATACTCATGTCACAACGGCTGTGCGTGGGACTATTGGACACATTGCTCCTGA 1841
||| ||||| ||||| || ||||| || || ||||| || || || ||||| ||||| ||
Sbjct 1385 CTACAAAGACACTCACGTGACAACAGCCGTCCGTGGCACAATCGGTCACATCGCTCCAGA 1444
Query 1842 GTATCTCTCAACTGGAAAATCTTCAGAGAAAACTGATGTTTTTGGCTACGGGATCATGCT 1901
||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct 1445 ATATCTCTCAACCGGAAAATCTTCAGAGAAAACCGACGTTTTCGGTTACGGAATCATGCT 1504
Query 1902 TTTGGAACTGATTACAGGTCAGAGAGCTTTTGATCTTGCAAGACTGGCGAATGACGATGA 1961
| ||||||| ||||| || || |||||||| ||||| || | || || || || || ||
Sbjct 1505 TCTGGAACTAATTACGGGACAAAGAGCTTTCGATCTCGCTCGGCTAGCTAACGATGACGA 1564
Query 1962 CGTTATGCTCCTAGATTGGGTGAAAGGGCTT-TTGAAGGAGAAGAAGCTGGAGATGCTT- 2019
||| ||| | || || ||||||||||| || ||||||||||||||||| |||||| ||
Sbjct 1565 CGTCATGTTACTTGACTGGGTGAAAGGA-TTGTTGAAGGAGAAGAAGCTAGAGATG-TTA 1622
Query 2020 GTGGATCCTGACCTGCAAAGCAAT-TACACAG-AA-GCAGAAGTAGAACA-GCTCATACA 2075
|||||||| || || || | ||| ||| || || | |||| | ||||| | | |||||
Sbjct 1623 GTGGATCCAGATCTTCAGA-CAAACTACG-AGGAAAG-AGAACTGGAACAAG-TGATACA 1678
Query 2076 AGTGGCTCTT-CTCTGCACACAGAGC-TCACCTATGGA-ACGACCTAAGATGTCTGAGGT 2132
|||||| || || ||||| || || ||||| ||||| | |||| ||||||||||| ||
Sbjct 1679 AGTGGCG-TTGCTTTGCACGCA-AGGATCACCAATGGAGA-GACCAAAGATGTCTGAAGT 1735
Query 2133 TGTTCGAATGCTTGAAGGTGACGGT-TTAGCGGAGAAATGGGACGAGTGGCAGAAAGTGG 2191
||| | ||||||||||| || || || ||||||| ||||||||||||||| ||||| |
Sbjct 1736 TGTAAGGATGCTTGAAGGAGATGGGCTT-GCGGAGAGATGGGACGAGTGGCAAAAAGTTG 1794
Query 2192 AAGTTCTC-AGGCAAGA-AGTGGAGCTCTCTTCTCACCCCACCTCTGACTGGATCCTTGA 2249
| | | | ||| |||| | || | | | || | || | |||||| ||||| |||||
Sbjct 1795 A-GATATTGAGGGAAGAGATTG-ATTTGAGTCCTAATCCTAACTCTGATTGGATTCTTGA 1852
Query 2250 TTCGACTGATAATCTT-CATGCTATGGAGTTGTCTGGTCCAAGATAAA 2296
||| ||| | ||| || || || | ||||| ||||||||||| ||||
Sbjct 1853 TTCTACTTACAAT-TTGCACGCCGTTGAGTTATCTGGTCCAAGGTAAA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92254573390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5