BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34220.1
Length=2292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473574 jgi|Araly1|473574|fgenesh2_kg.1__3528__AT1G34220.1 3511 0.0
> Ahg473574 jgi|Araly1|473574|fgenesh2_kg.1__3528__AT1G34220.1
Length=2252
Score = 3511 bits (1901), Expect = 0.0
Identities = 2142/2259 (95%), Gaps = 14/2259 (1%)
Strand=Plus/Plus
Query 9 GATCTTTGTAATCTTCTCTGTTCCAAAGCTTCGCGATCGATCTTCAGTGATCATCAAATC 68
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 GATCTTTGTAATCTTCTCTGTTCCAAAGCTTCGCGATCGATCTTCAGTG---ATCAAATC 57
Query 69 GTAACCAGTAAAAAATCGATCATGTCGATGCTCGATTCCTTCTTCAATAAGGGTTTCAAA 128
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTAACCAGT-AAAAATCGATCATGTCGATGCTCGATTCCTTCTTCAATAAGGGTTTCAAA 116
Query 129 GCTGCAAAATGCAAAACCTTGCTCAAGTTAACGATCCCTAGGATTAAGCTAATCAGGAAT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GCTGCAAAATGCAAAACCTTGCTCAAGTTAACGATCCCTAGGATTAAGCTAATCAGGAAT 176
Query 189 AGAAGAGAAGCACAGATTAAACAAATGCGTCGTGAAATTGCAAAGCTTCTCGAGACTGGT 248
||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 177 AGAAGAGAAGCTCAGATTAAGCAAATGCGTCGTGAAATTGCTAAGCTTCTTGAGACTGGT 236
Query 249 CAAGAAGCTACTGCTCGAATTCGGGTTGAGCATATTATAAGGGAAGAGAAGATGATGGCT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAGAAGCTACTGCTCGAATTCGGGTTGAGCATATTATAAGGGAAGAGAAGATGATGGCT 296
Query 309 GCTCAAGAGATCCTTGAGCTCTTCTGTGAACTCATTGCTGTTCGTCTTCCGATTATTGAG 368
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 GCTCAAGAGATTCTTGAGCTCTTCTGTGAACTCATCGCTGTTCGTCTTCCGATTATTGAG 356
Query 369 GCACAAAGGGAATGTCCTTTGGATCTAAAAGAAGCGATATCAAGTGTATGTTTTGCTGCG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCACAAAGGGAATGTCCTTTGGATCTAAAAGAAGCGATATCAAGTGTATGTTTTGCTGCG 416
Query 429 CCGAGGTGCTCTGACTTGACAGAGCTGCAGCAGGTTCAGATACTGTTTGTATCTAAGTAT 488
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 417 CCGAGGTGCTCTGACTTGACAGAGCTGCAGCAGGTCCAGATACTATTTGTTTCCAAGTAT 476
Query 489 GGAAAGGAATTTGTTGCAGCTGCATCTGAGCTCAAGCCGGATTCTGGTGTCAATCGTAAG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGAAAGGAATTTGTTGCAGCTGCATCTGAGCTCAAGCCGGATTCTGGTGTCAATCGTAAG 536
Query 549 ACTGAATCGCTGATATTCATTGCATGGTTCAGTCTAGTAGAAACAAGAGATTTGTTCATG 608
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 537 ACTGAATCGCTAATATTCATTGCGTGGTTCAGTCTAGTAGAAACAAGATATTTGTTCATG 596
Query 609 TTTTTGTATTTTTCCAATTCAATTTTACAGTTGGTGGAGTTGCTGTCTGTACGTGCACCT 668
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 TTTTTGTACTTTTCCAAATCAATTTTACAGTTGGTGGAGTTGCTGTCTGTGCGTGCACCT 656
Query 669 TCTCCAGAAACTAAACTGAAACTTCTCAAGGAAATTGCAGAAGAACATGAACTTGATTGG 728
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCCCCAGAAATTAAACTGAAACTTCTCAAGGAAATTGCAGAAGAACATGAACTTGATTGG 716
Query 729 GACCCTGCTTCTACAGAAACTGATCTCTTCAAATCTCATGAAGATCTCCTTGATGGACCA 788
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 717 GACCCTGCTTCTACAGAAACTGATCTCTTCAAATCGCATGAAGATCTCCTTGATGGACCA 776
Query 789 AAACAATTTGGTGGGGGATCTAAGCTGCCGTTACCAGAGGAACAAAATGAAAAGACAAAT 848
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 777 AAACAATTTGGTGGGGGATCTAAGCTGCCGTTACCGGAGGAACAAAATGAAGGGACACAT 836
Query 849 TTAACATCTCTTTCAGCGGCAAAGGAGAAATCTGATTCTGACTCAGAGTATGATATATTG 908
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGACATCTCTTTCAGCGCCAAAGGAGAAATCTGATTCTGACTCAGAGTATGATATATTG 896
Query 909 GACTTTCCCGAGGTTCCAAATGTCTTGCTGCGACCAACTCCTGGTGCTACCTCTGTAAAT 968
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 897 GACTTTCCCGAGGTTCCAAATGTCTTGCTGCGACCAACTCTTGGTGCTACCCCTGTAAAT 956
Query 969 GCACCGGATGCAGCGAAATCAGCCAGTTATGAACATACCTCTCACGACTTGCCCTTTGAT 1028
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 957 GCACCGGATGCAGCGAAATCTGCCAGTTATGAACATACCTCTCATGACTTGCCCTTTGAT 1016
Query 1029 TCAGAGAATGCAGGAGTCGAAAAAACGGCTTCCAAAAGAGATGAACATCCTGCAAAAGC- 1087
|||||||| ||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||
Sbjct 1017 TCAGAGAAAGCAGGAGTCGAGAAAACAGCTTCTAAAAGAGGTGATCATCCTGCAAAAGCG 1076
Query 1088 AAGCAAAACTGTCGTGGAAGGCCAACAATCTTCACCCATTCTGATGGAATCTTTCGAAAA 1147
|| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 AA-CAAAACTGTCGTTGAAGGCCAACAATCTTCACCCATTGTGATGGAATCTTTCGAAAG 1135
Query 1148 GAAGAATTACTCTCCGCCATCCATTGATGCAGTAGGGCCCATCCCTACAAAAGAGAGTGG 1207
||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1136 GAAAAATTATTCTCCGCCATCCATTGATGCAGTAGGGCCCTTTCCTACAAAAGAGAGTGG 1195
Query 1208 TGCTTCCAGAGATACTCCAAGGAAAATATCCGATGGAGACTTGCAGGATGTCTTAATGGC 1267
|||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1196 TGCTTCGAGAGATGCTCCAAGGAAAATATCCGATGGAGATTTGCAGGATGTCTTAACGGC 1255
Query 1268 TGCTCAAGCTGCTGCTGACTCAGCAGAACGTGCAGCATCAGCTGCCCGCTCAGCTGCAAG 1327
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 1256 TGCTCAAGCTGCTGCTGACTCAGCGGAACGTGCAGCAGCAGCTGCCCGTTCAGCTGCAAG 1315
Query 1328 CCTGGCACAACTCAGAATCAACGAGCTTACCAGGAAGACTTCTGATCAGTATCCAGAAAG 1387
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316 CCTGGCACAACTCAGAATCAACGAGCTTACCAGGAAGACTTCTGATCAGTCTCCAGAAAG 1375
Query 1388 TCCGTCTGAGAACCCTTTCCATGCTCCCTCAATGGGAAACCTTCAATTTGATCATCAGAA 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCCGTCTGAGAACCCTTTCCATGCTCCCTCAATGGGAAACCTTCAATTTGATCATCAGAA 1435
Query 1448 TTCTTCGGCCAGCAGTAGCGGAGATCTTACAGAGCTCCAGAGAGCAGAAACTTCGTCACT 1507
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTCTTCGGGCAGCAGTAGCGGAGATCTTACAGAGCTCCAGAGAGCAGAAACTTCGTCACT 1495
Query 1508 TTTCAACTCTGAGCAGAACAACCAACAGCCACAGACACACTCTTCAATGGAAAAACCGCA 1567
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1496 TTTCACCTCTGAGAAGAACAACCAACAGCCACAGAGACACTCTTCAATGGAAAAACCGCA 1555
Query 1568 GTTTGATCGTCAGAACTCATCATTCAGTAGCTATGGCGATCTTACCCCACAGAGATTCCA 1627
|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1556 GTTTGAACGTCAGAACTCATCATTTAGTAGCTATGGCGATCTTACGCCACAGAGATTCCC 1615
Query 1628 TTCAATGGAAAAACCACAGTTTGATCATCAGAACTCATCAGGCAGCAACTATGACGATCT 1687
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1616 TTCAATGGAAAGACCGCAGTTTGATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1675
Query 1688 TACACCACAGAGATTC-TCGTCATTGGAGAAACCGCAGTTTGATCATCAGAACTCATCAG 1746
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1676 TACACCACAGAGATTCCT-GTCAATGGAGAAACCGCAGTTTGATCATCAGAACTCATCAG 1734
Query 1747 GCAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGGAGAAACCGCAGTTTG 1806
||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||
Sbjct 1735 CCAGCAACTATGACGATCTTACACCACAGAGATTCCCGTCATTTGAAAAACCGCAGTTTG 1794
Query 1807 ATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCTGCCAGAGCTCCAAAGGCCAGAGA 1866
||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1795 ATCATCAGAACTCCTCAGTCAGAAGCTATGGCGATCTTCCAGATCTCCAAAGACCAGAGA 1854
Query 1867 CTTCACCACTTGACAGACTCAGCCCTGACCAGGACCATCAGCAAATGAGACTGCCTTCAA 1926
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1855 CTTCATTGCTTGACAGACTCAGCCCTGACCAGGACCACCAGCAAATGAGACTGCCTTCAA 1914
Query 1927 TGGAAGATGATCCCTATTACTCATACCCTAATCTCTTCACATCGCAGAAGCATGATCCCT 1986
||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1915 TGGAAGATGATCCCTATTATTCATACCCTAATCTGTTCACATCGCAGAAGCCTGATCGCT 1974
Query 1987 CATCTGGCTCTCATTCGTTCTCAGACAATACAAGACCCGCCCATGATTCGTGATTCTTAC 2046
| | |||||||||||| |||||||||||||||||||| || |||||||| ||| ||||||
Sbjct 1975 CTTTTGGCTCTCATTCATTCTCAGACAATACAAGACCTGCTCATGATTCTTGACTCTTAC 2034
Query 2047 CTG-CATATGTTATAATGCAAGCTTGGTGTTTTT---CAGTGTGTTTCACTTGTGCTGTT 2102
| | |||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 2035 CAGGCATATGTTATAATGCAAGCTTGGTGTTTTTTTTCAGTGTGTTTCACTTCTGTTGTT 2094
Query 2103 CCTTCTCTTGCGGAACAAAGAGCTCAAAATGTTTTTTGGAATAGCCTTTTCTTCCTCTTT 2162
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2095 CCTTCTCTTGCGGAACAAAGAGCTCAAAATGTTTTTTTGAACAGCCTTTTCTTCCTCTTT 2154
Query 2163 ATCCAGTGGAAGACATATGTAATGTATAGAACTTGGTGTTTGTGATTATGTTTAATTTA- 2221
|| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 2155 ATTCAGTGGAAGACATATGTAATGTATAGAACTTTGTGTACGTGATTATGTTTAATT-AC 2213
Query 2222 AAGGCCTTGGTTTTCACAAGAAATGAATGAAGAATGCTG 2260
||||||||||||| | |||||| ||||| | || |||||
Sbjct 2214 AAGGCCTTGGTTTGCTCAAGAATTGAATTACGATTGCTG 2252
Score = 291 bits (157), Expect = 2e-77
Identities = 209/234 (89%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1535 GCCACAGACACACTCTTCAATGGAAAAACCGCAGTTTGATCGTCAGAACTCATCATTCAG 1594
|||||||| | | |||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 1601 GCCACAGAGATTCCCTTCAATGGAAAGACCGCAGTTTGATCATCAGAACTCATCAGCCAG 1660
Query 1595 TAGCTATGGCGATCTTACCCCACAGAGATTCCAT-TCAATGGAAAAACCACAGTTTGATC 1653
| ||||| ||||||||| ||||||||||||| | |||||||| ||||| ||||||||||
Sbjct 1661 CAACTATGACGATCTTACACCACAGAGATTCC-TGTCAATGGAGAAACCGCAGTTTGATC 1719
Query 1654 ATCAGAACTCATCAGGCAGCAACTATGACGATCTTACACCACAGAGATTCTCGTCATTGG 1713
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1720 ATCAGAACTCATCAGCCAGCAACTATGACGATCTTACACCACAGAGATTCCCGTCATTTG 1779
Query 1714 AGAAACCGCAGTTTGATCATCAGAACTCATCAGGCAGCAA-CTATGACGATCTT 1766
| |||||||||||||||||||||||||| |||| ||| || ||||| |||||||
Sbjct 1780 AAAAACCGCAGTTTGATCATCAGAACTCCTCAGTCAG-AAGCTATGGCGATCTT 1832
Score = 287 bits (155), Expect = 3e-76
Identities = 207/232 (89%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 1614 CCACAGAGATTC-CATTCAATGGAAAAACCACAGTTTGATCATCAGAACTCATCAGGCAG 1672
||||||||| | | ||||||||||||||| |||||||| | ||||||||||||| ||
Sbjct 1524 CCACAGAGACACTC-TTCAATGGAAAAACCGCAGTTTGAACGTCAGAACTCATCATTTAG 1582
Query 1673 CAACTATGACGATCTTACACCACAGAGATTCTCGTCATTGGAGAA-ACCGCAGTTTGATC 1731
| ||||| ||||||||| |||||||||||| | ||| |||| || ||||||||||||||
Sbjct 1583 TAGCTATGGCGATCTTACGCCACAGAGATTCCCTTCAATGGA-AAGACCGCAGTTTGATC 1641
Query 1732 ATCAGAACTCATCAGGCAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGG 1791
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1642 ATCAGAACTCATCAGCCAGCAACTATGACGATCTTACACCACAGAGATTCCTGTCAATGG 1701
Query 1792 AGAAACCGCAGTTTGATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCT 1843
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1702 AGAAACCGCAGTTTGATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1753
Score = 165 bits (89), Expect = 1e-39
Identities = 135/157 (86%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 1689 ACA-CCACAGAGATTCTCGTCATTGGAGAAACCGCAGTTTGATCATCAGAACTCATCAGG 1747
||| ||||||||| ||| ||| |||| |||||||||||||| | |||||||||||||
Sbjct 1520 ACAGCCACAGAGACACTCTTCAATGGAAAAACCGCAGTTTGAACGTCAGAACTCATCATT 1579
Query 1748 CAGCAACTATGACGATCTTACACCACATAGATTCCCGTCAATGGAGAA-ACCGCAGTTTG 1806
|| | ||||| ||||||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 1580 TAGTAGCTATGGCGATCTTACGCCACAGAGATTCCCTTCAATGGA-AAGACCGCAGTTTG 1638
Query 1807 ATCATCAGAACTCATCAGTCAGCAGCTATGGCGATCT 1843
|||||||||||||||||| ||||| ||||| ||||||
Sbjct 1639 ATCATCAGAACTCATCAGCCAGCAACTATGACGATCT 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86312495170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5