BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34245.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922535 jgi|Araly1|922535|scaffold_103816.1 649 0.0
Ahg922544 jgi|Araly1|922544|scaffold_103825.1 318 2e-86
Ahg922543 jgi|Araly1|922543|scaffold_103824.1 272 2e-72
> Ahg922535 jgi|Araly1|922535|scaffold_103816.1
Length=404
Score = 649 bits (351), Expect = 0.0
Identities = 383/399 (96%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 108 aaaaaGATTATAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCCTCGTCCTAGTC 167
||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6 AAAAATATTAAAAACATGACGAAGTTTGTACGCAAGTATATGTTTTGCATCGTCCTAGTC 65
Query 168 TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACACGGTC 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 66 TTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCACGGTC 125
Query 228 AATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAACGCACCACAAGAAGGAA 287
||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||||
Sbjct 126 AATGGCGGAGAAAAGAAAAACTCCCATATGGAACAAGCTCAAACGCACCACGAGAAGGAA 185
Query 288 ATAAGCAAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGAT 347
||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 ATAGGGAAAAAAGGAGGGGTAGAAATGGAAATGTACCCGACAGGATCAAGCTTACCGGAT 245
Query 348 TGTTCATACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGC 407
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 246 TGTTCATACGCGTGTGGCGCATGCTCGCCGTGTAAACGTGTGATGATTAGTTTCCAATGC 305
Query 408 TCAGTCGCCGAATCATGTAGCGTCATCTACAGATGCACGTGCAGAGGGAGATACTATCAC 467
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 306 TCAGTCGCCGAATCATGTAGCGTCATTTACAGATGCACGTGCAGAGGAAGATACTATCAC 365
Query 468 GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTAtt 506
|||||||||||||||||||||||||||||||||||||||
Sbjct 366 GTGCCATCTAGAGCTTGAATTGAATCTCCGCCGTTTATT 404
> Ahg922544 jgi|Araly1|922544|scaffold_103825.1
Length=211
Score = 318 bits (172), Expect = 2e-86
Identities = 195/206 (95%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 294 AAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGATTGTTCA 353
||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 7 AAAAA-AGAGGGGTATAAATGGAAATGTACCCAATAGGATCAAGCTTACCGGATTGTTCA 65
Query 354 TACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGCTCAGTC 413
|||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 66 TACGCGTGTGGCGCATATTCGCCGTGTAAACGTATGATGATTAGTTTCCAATGCTCAGTC 125
Query 414 GCCGAATCATGTAGCG-TCATCTACAGATGCACGTGCAGAGGGAGATACTATCACGTGCC 472
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 126 GCCGAATCATGTAGCGGTCATTTACAGATGCACGTGCAGAGGAAGATACTATCACGTGCC 185
Query 473 ATCTAGAGCTTGAATTGAATCTCCGC 498
||||||| ||||||||||||||||||
Sbjct 186 ATCTAGAACTTGAATTGAATCTCCGC 211
> Ahg922543 jgi|Araly1|922543|scaffold_103824.1
Length=208
Score = 272 bits (147), Expect = 2e-72
Identities = 170/180 (94%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 105 aaaaaaaaGATTATAAA-CATGACGAAGTTTGTACGCAAGTAT-ATGTTTTGCCTCGTCC 162
||||||| ||||| ||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 3 AAAAAAAGGATTA-AAACCATGACGAAGTTTGTACGCAAGT-TCATGTTTTGCCTCGTCC 60
Query 163 TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCA 120
Query 223 CGGTCAATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAAC-GCACCACAAG 281
|||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 121 CGGTCAATGGCGGACAAAAGAAAAACGCCGATGTAGAACAAGCTCAAACCG-ACCACAAG 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5