BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34270.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313939 jgi|Araly1|313939|fgenesh1_pm.C_scaffold_1002719 2198 0.0
> Ahg313939 jgi|Araly1|313939|fgenesh1_pm.C_scaffold_1002719
Length=1437
Score = 2198 bits (1190), Expect = 0.0
Identities = 1360/1441 (94%), Gaps = 15/1441 (1%)
Strand=Plus/Plus
Query 31 ATGGTTCCTAAGATCGCATCAATGGCGTCTACTAGAcctctctgttcaattcctt-ctat 89
||||||||||||||||||||||||||| |||||||||||||| ||| |||||| || |
Sbjct 1 ATGGTTCCTAAGATCGCATCAATGGCG---ACTAGACCTCTCTGCTCACTTCCTTACT-T 56
Query 90 cttcctctctttctctctcctcttcgtcgtctctcttctcttcttcttctcCAATTCCTT 149
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 57 ATTCCTCTCTTTCTCTCTCCTCTTCGTCGTCTCGCTTCTCTTCTTCTTCTCCAATTCCTT 116
Query 150 AATCTCCAATCCAAATCCGAGCATTTCACACAACACTCTCCAAAACGGTATCAATGTCTA 209
||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 117 AATCTCCAACCCAAATCCGAGAATTTCACACAATACTCTCCAAAACGGTATCAATGTCTT 176
Query 210 TGTAGCTGAGCTTCCAAGATCCCTAAACTATGGTCTTATCGACAAATACTGGTCCTCTTC 269
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 177 TGTAGCTGAGCTTCCAAGATCCCTAAACTATGGTCTTCTCGACAAGTACTGGTCCTCTTC 236
Query 270 TACTCCAGATTCACGTATACCCAGTGACCCAGATCACCCGACCCGTAAAACCCA-TT--- 325
| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 TTCTCCAGATTCACGCATACCCAGTGACCCAGATCACCCGACCCGTAAAACCCATTTACC 296
Query 326 C--ACCCGATAAATACCCACCGTACCCAGAGAACCCGTTGATCAAGCAATACAGTGCTGA 383
| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 297 CAAACCCGGTAAATACCCACCGTACCCAGAGAATCCGTTGATTAAGCAATACAGTGCCGA 356
Query 384 GTACTGGATCATGGGAGACCTAGAAACCTCACCAGAGAAACGAATTGGATCTTTTGCTAA 443
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 GTATTGGATCATGGGTGACCTAGAAACCTCACCGGAGAAACGAATTGGATCTTTTGCTAA 416
Query 444 AAGGGTTTTTAGTGAATCTGACGCTGATGTAGTCTTCGTGCCTTTCTTTGCGACG-TTAA 502
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 417 AAGGGTTTTCAGTGAATCTGACGCTGATGTAGTCTTCGTGCCGTTCTTTGCGACGCTT-A 475
Query 503 GTGCAGAGATGGAGCTTGGAAATGGTAAAGGTTCGTTTAGAAAGAAGTCTGGTAACGAAG 562
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 476 GTGCAGAGATGGAGCTTGGAAATGGAAAAGGTTCGTTTAGGAAGAAGAATGGTAACGAAG 535
Query 563 ATTATCAAAGACAGAGACAAGTGCTTGATTTTGTCAAGAACACTAAAGCTTGGAAACGAT 622
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 536 ATTATCAGAGACAGAGACAAGTTCTTGATTTTGTCAAGAACACTGAAGCTTGGAAACGAT 595
Query 623 CTAATGGTCGTGATCACGTTTTTGTTCTAACGGACCCTGTTGCAATGTGGCATGTTCGTG 682
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 596 CCAATGGTCGTGATCACGTTTTTGTTCTAACTGACCCAGTTGCAATGTGGCATGTTCGTG 655
Query 683 AGGAGATTGCTTTATCTATTCTTCTTGTGGTGGATTTTGGAGGATGGTTTAGGCAAGATT 742
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 AGGAGATTGCTTTATCGATTCTTCTTGTGGTGGATTTTGGAGGCTGGTTTAGGCAAGATT 715
Query 743 CTAAGTCGTCTAATGGGACTAGCTTGCCTGAGAGGATTCAGCATACTCAAGTCTCTGTCA 802
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 CTAAGTCATCTAACGGGACTAGCTTGCCTGAGAGGATAGAGCATACTCAAGTCTCTGTCA 775
Query 803 TTAAGGATGTGATTGTTCCATATACGCATTTGCTTCCTAGACTGGATTTGTCTCAGAACC 862
||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 776 TTAAGGATGTGATAGTTCCATATACGCATCTGCTTCCTAGCCTAGATTTGTCTCAGAACC 835
Query 863 AGAGACGTCATAGCCTTCTTTATTTTAAAGGCGCTAAGCACAGACATCGGGGAGGGTTAA 922
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 836 AGAGACGTCATAGCCTTCTTTATTTCAAAGGGGCTAAGCACAGACATCGGGGAGGGTTAA 895
Query 923 TCAGAGAAAAACTATGGGACTTGCTGGTCAATGAGCCTGGCGTTGTCATGGAAGAAGGTT 982
|||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 896 TCAGAGAAAAGCTATGGGACTTGCTGGTCGATGAACAAGGCATTGTCATGGAAGAAGGTT 955
Query 983 TTCCTAATGCAACAGGAAGGGAACAGTCGATAAGAGGAATGAGAAACTCAGAGTTCTGCT 1042
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 956 TTCCTAATGCAACAGGAAGGGAACAATCAATAAGAGGAATGAGAAACTCAGAGTTCTGCT 1015
Query 1043 TACATCCAGCTGGTGACACTCCCACTTCATGCCGTCTCTTTGATGCCATTCAAAGTCTAT 1102
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TACATCCAGCCGGTGACACTCCCACTTCATGCCGTCTCTTTGATGCCATTCAAAGTCTAT 1075
Query 1103 GCATCCCTGTGATTGTCAGCGACACCATAGAGCTCCCGTTTGAGGGAATAATCGATTACT 1162
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1076 GCATCCCTGTGATTGTCAGCGACACCATAGAGCTCCCGTTTGAGGGAATGATCGATTACT 1135
Query 1163 CAGAATTCTCGGTTTTTG-CCTCTGTAAGTGATGCATTAACACCTAAATGGTTGGCTAAT 1221
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CAGAATTCTCGGTCTTTGTCC-CTGTAAGTGATGCATTAACACCTAAATGGTTGGCTAAT 1194
Query 1222 CATCTCGGAAGGTTCTCTGAAAGAGAGAAGGAAACATTGAGAAGTAGAATAGCAAAGGTT 1281
|||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 1195 CATCTCAGAAGGTTCTCTGAAAGAGAGAAGGAAACATTCAGAGGTAGAATGGCAAAGGTT 1254
Query 1282 CAGTCAGTTTTTGTGTATGATAATGGTCATGCCGATGGGATTGGACCTATTGAACCCAAT 1341
||| ||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||
Sbjct 1255 CAGACAGTTTTTGTGTATGATAATGGTCAAGGCAATGGGATTGGACCAATTGAACCCAAT 1314
Query 1342 GGTGCGGTGAATCACATATGGAAGAAGGTTCAGCAGAAGGTGCCAATGGTGAAGGAGGCA 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1315 GGTGCGGTGAATCACATATGGAAGAAGGTTCAGCAGAAGGTGCCAATGGTGAAGGAAGCG 1374
Query 1402 GTGATTAGGGAGAGGAGAAAACCAGCAGGTGCTTCCGTTCCACTTCGATGTCAATGTATC 1461
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTGATTAGGGAAAGGAGAAAACCAGCAGGTGCTTCCGTTCCACTTCGATGTCAATGTATC 1434
Query 1462 T 1462
|
Sbjct 1435 T 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5