BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34290.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889167 jgi|Araly1|889167|Al_scaffold_0007_1153 326 2e-88
> Ahg889167 jgi|Araly1|889167|Al_scaffold_0007_1153
Length=1689
Score = 326 bits (176), Expect = 2e-88
Identities = 395/499 (79%), Gaps = 21/499 (4%)
Strand=Plus/Plus
Query 139 CCAGAGGAATTTGTAACGAGTTGGCAAGGGAACAACCCTTGTGAATGGTTTGGTACAAAC 198
|||||||| || |||| ||||||||||||||| ||||||| |||||||||| | ||||
Sbjct 127 CCAGAGGAGTTCGTAAAGAGTTGGCAAGGGAATGACCCTTGCCAATGGTTTGGGATAAAC 186
Query 199 TGTTTGGAGGGTATCATCATTG-GTATCTCTTTTATTTCCTTGAACTTAATCGGAACTAT 257
||| |||| |||||||||| | ||||| | ||||| ||| ||||| | | |||||| ||
Sbjct 187 TGTCTGGAAGGTATCATCA-CGAGTATCACCTTTATCTCCCTGAACATGAGCGGAACCAT 245
Query 258 TTCTCCACATTTTGCAGATCTAACCTCTCTTCGGGTCATAGATCTTTCGCATAACCGACT 317
||||||| |||||||||||||||||||||| ||| |||||||||||||||||| | ||
Sbjct 246 CTCTCCACGGTTTGCAGATCTAACCTCTCTTCAGGTGATAGATCTTTCGCATAACGGTCT 305
Query 318 TAAATGTACCATTCCTTTTGAAATCACAAAGTTGAAGAACCTGACTATTGTGGATGTTTC 377
|| | ||||||||||| ||| |||| ||||| |||||||| | | ||||| ||||
Sbjct 306 TACAGGTACCATTCCTCCCGAACTCACTAAGTT---GAACCTGAGAACTCTGGATCTTTC 362
Query 378 TTATAACCAACTTCATGGGGA-AGTCCCACGCGTTAGAGGA-ATTGTTATACTCACTGAA 435
||||||| |||||| |||| | | || | |||| | | || ||| | || || |
Sbjct 363 CTATAACCGTCTTCAT-GGGACACTGCCGCAATTTAG-GAACATAGTTCCAAACATTG-A 419
Query 436 AGGAATC-CAAACATCGAGTC-AACCTGCCTTCTTGTTCCTTCGCCAACAAGGAACAAGA 493
||||| | || |||||||| | |||| || ||||||||||||||||||||||||||||||
Sbjct 420 AGGAAACTCAGACATCGAGACAAACC-GCGTTCTTGTTCCTTCGCCAACAAGGAACAAGA 478
Query 494 ACAAACCAACTGTTTTGGTACTTCTACTTGGG-ATTTTGGTTGGTTTGGTGGTTGCAGGA 552
||||| | |||||||| |||||| | | || ||| |||| |||||||| ||||| | |
Sbjct 479 ACAAATTAGTTGTTTTGGCACTTCT-CATAGGCATTGTGGTCGGTTTGGTTGTTGCTGTA 537
Query 553 GGAGCATCCTTTGGATTCTACCTGTAT-AGGATAAGGAAGCAACCTAAG-AGGCT-CCAA 609
|||| | | |||| | |||| |||| | | || |||||||||| ||| ||||| |||
Sbjct 538 GGAGGAGCTTTTGCAGTCTATCTGT-TGAAGAAAAGGAAGCAAT-TAAACAGGCTTCCA- 594
Query 610 GAACCAAATGAAGCAGTGA 628
||||| |||||| ||||||
Sbjct 595 GAACCCAATGAAACAGTGA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5