BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34300.1
Length=2643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473585 jgi|Araly1|473585|fgenesh2_kg.1__3539__AT1G34300.1 3731 0.0
> Ahg473585 jgi|Araly1|473585|fgenesh2_kg.1__3539__AT1G34300.1
Length=2606
Score = 3731 bits (2020), Expect = 0.0
Identities = 2419/2613 (93%), Gaps = 22/2613 (1%)
Strand=Plus/Plus
Query 21 agaagaagCTTCACAATCGTAACAATGGCGGTGAAGACGCCATttctcaaacttctccct 80
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1 AGAAGAAGCTTCACAATCGCAACAATGGCGGAGAAGAAGCCATTTCTCAAACTTCTCCCT 60
Query 81 cttcttc-tc--cttctcctccacttccctttctcattctctaccatacctctcggctcc 137
||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CTTCTTCTTCTGCTTCTCCTTCACTTCCCTTTATCATTCTCTACCATACCTCTCGGCTCT 120
Query 138 GTTATTTACGCCTCCGGTTCCAACCAGAACTGGCCATCTCCCAATTCCACTTTCTCCGTC 197
||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 GTTATTTTCGCCTCCGGTTCCAACCAGAATTGGCCATCTCCAAATTCCACTTTCTCCGTC 180
Query 198 TCCTTTGTTCCATCTCCTTCCCCTAACTCCTTCCTCGCCGCCGTCTCTTTCGCTGGAAGC 257
|||||||||||| | |||| ||||| || |||||||||||||| |||||||| |||| |
Sbjct 181 TCCTTTGTTCCAGGTTCTTCACCTAATTCATTCCTCGCCGCCGTTTCTTTCGCCGGAAAC 240
Query 258 GTTCCGATATGGTCAGCAGGAACCGTTGACTCACGAGGATCTCTTCGTCTTCACACCTCC 317
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTTCCGATATGGTCAGCGGGAACCGTTGACTCACGAGGATCTCTTCGTCTTCTCACCTCC 300
Query 318 GGCTCTCTCCGTCTCACCAACGGCTCCGGAACCACCGTCTGGGACTCTAAAACCGATCGT 377
||||| ||||| |||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 301 GGCTCCCTCCGCCTCACCAACGGCTCCGGAACCACCATCTGGGATTCCGGTACAGATCGT 360
Query 378 CTCGGTGTTACTTCCGGTTCGATTGAAGATACCGGTGAATTCATCCTCCTCAATAACCGA 437
|||||||||||||||||||||||||||||| |||||||||| || |||| ||| ||||||
Sbjct 361 CTCGGTGTTACTTCCGGTTCGATTGAAGATTCCGGTGAATTTATTCTCCGCAACAACCGA 420
Query 438 AGCGTCCCGGTTTGGTCTTCCTTCGATAATCCGACGGATACAATCGTCCAATCGCAGAAT 497
||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 AGCATTCCGGTTTGGTCTTCCTTCGATAATCCGACGGATGCAATCGTCCAATCGCAGAAT 480
Query 498 TTCACCGCCGGTAAGATTCTCCGATCTGGTCTTTACTCGTTTCAGTTAGAGAGAAGTGGG 557
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TTCACCGTCGGTAAGATTCTCCGATCTGGTCTTTACTCGTTTCAGTTAGAGACAAGTGGG 540
Query 558 AATCTTACTCTTAGGTGGAACACTAGCGCGATTTACTGGAACCATGGACTTAATTCTTCG 617
||||||||||||||||||||||||||| ||||||||||||| | ||| || |||||||||
Sbjct 541 AATCTTACTCTTAGGTGGAACACTAGCACGATTTACTGGAATCTTGGTCTCAATTCTTCG 600
Query 618 TTTAGCTCGAATCTATCGTCT-C---C-TAGATTAAGT-TTACAGACTAATGGAGTTGTT 671
|||||||||| ||||||||| | | ||| || ||| |||| | |||||||||||||
Sbjct 601 ATTAGCTCGAACCTATCGTCTCCGAGCTTAGGTTTAGTATTACGGTCTAATGGAGTTGTG 660
Query 672 TCGATCTTCGAATCAAATCTTCTTGGAGGAGCTGAAATCGTTTATAGTGGCGATTACGGT 731
|| |||||||| || ||||||| ||| || | ||| | |||||| |||||||||||||||
Sbjct 661 TCAATCTTCGATTCGAATCTTCGTGGCGGCGTTGACACCGTTTACAGTGGCGATTACGGT 720
Query 732 GATAGCAATACGTTTAGGTTCTTGAAGTTAGATGATGATGGGAATTTGAGAATCTACAGT 791
|||||| |||| ||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 721 GATAGCGATACTTTTAGGTTCTTGAAGTT-G--GATGATGGGAATTTGAGAATTTACAGT 777
Query 792 TCTGCTAGTAGAAACAGTGGACCTGTGAATGCTCATTGGTCTGCTGTTGATCAGTGTCTT 851
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 TCTGCGAGTAGAAGTAGTGGACCTGTGAATGCTCATTGGTCTGCTGTTGATCAGTGCCTT 837
Query 852 GTTTATGGATATTGTGGAAACTTTGGGATTTGTAGTTACAATGATACTAATCCGATTTGT 911
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 838 GTTTATGGATATTGTGGGAACTTTGGGATTTGTAGTTACAACGATACTAATCCGATTTGC 897
Query 912 TCGTGTCCGTCTCGTAACTTTGATTTTGTTGATGTGAATGATAGAAGAAAGGGATGTAAA 971
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 898 TCGTGTCCGTCTGGTAACTTTGATTTTGTTGATGTGAATGATAGAAGAAAGGGATGCAGA 957
Query 972 AGGAAAGTGGAGCTAAGTGATTGCTCTGGCAATACAACCATGCTTGATTTGGTTCATACG 1031
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||
Sbjct 958 AGAAAAGTGGAGCTAAGTGATTGCTCTGGCAACACAACTATGCTTGATTTGGCTCACACA 1017
Query 1032 AGGTTGTTTACTTATGAAGACGATCCGAACTCGGAGAGTTTCTTTGCGGGTAGTTCGCCT 1091
||||| ||||| || ||| ||||||| |||||||| | |||||||||||||||||| |||
Sbjct 1018 AGGTTATTTACATACGAAAACGATCCAAACTCGGAAATTTTCTTTGCGGGTAGTTCTCCT 1077
Query 1092 TGTAGAGCTAATTGTCTTAGTAGTGTT-TTGTGTCTTGCTTCTGTTTCCATGTCTGATGG 1150
||||||||||||||||||||||| ||| | |||||||||||||| || |||||||||||
Sbjct 1078 TGTAGAGCTAATTGTCTTAGTAGCGTTACT-TGTCTTGCTTCTGTCTCGATGTCTGATGG 1136
Query 1151 GTCTGGAAATTGTTGGCAGAAACATCCTGGTTCCTTCTTTACTGGGTACCAGTGGCCATC 1210
||| || ||||||||||| ||||| || |||||||||||||| ||||| ||| |||||||
Sbjct 1137 GTCAGGCAATTGTTGGCAAAAACAACCCGGTTCCTTCTTTACCGGGTATCAGAGGCCATC 1196
Query 1211 GGTTCCGAGTACTTCTTATGTTAAAGTGTGTGGTCCAGTGGTGGCTAACACA-C-TCGAA 1268
|||||| |||||||||||| |||||||||||| ||||||||| |||| || | | |
Sbjct 1197 GGTTCCAAGTACTTCTTATATTAAAGTGTGTGCTCCAGTGGTTTTTAACCCACCTTTG-- 1254
Query 1269 AGAGCAACAAAAGGCGACGA-TAACAACTCGAAAGTGCATTTGTGGATTGTCGCGGTTGC 1327
| |||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 ATTGCAACAAAAGACGAC-AGTAACAACTCGAAAGTGCATTTGTGGATTGTCGCAGTTGC 1313
Query 1328 TGTAATAGCTGGGCTTCTTGGTTTGGTTGCAGTAGAGATAGGTCTCTGGTGGTGTTGCTG 1387
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1314 TGTAATGGCTGGGCTTCTTGGTTTGGTTGCAGTAGAGGTAGGTCTCTGGTGGTGTTGCTG 1373
Query 1388 TAGAAAGAATCCTCGGTTTGGAACTTTGTCGTCTCACTACACTTTGCTTGAGTACGCTTC 1447
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1374 TAGAAAGAATCCTCGGTTTGGAACTTTATCGTCTCACTACACTTTGCTTGAGTACGCTTC 1433
Query 1448 TGGTGCACCTGTGCAGTTTACTTATAAGGAGCTGCAGCGTTGCACCAAAAGTTTCAAAGA 1507
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGGTGCACCTGTGCAGTTTACCTATAAGGAGCTGCAGCGTTGCACCAAAAGTTTCAAAGA 1493
Query 1508 GAAGCTTGGAGCTGGAGGGTTTGGAACTGTGTATAGAGGCGTGCTCACTAATAGAACCGT 1567
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1494 GAAGCTTGGAGCTGGAGGGTTTGGAACTGTGTATAAAGGCGTGCTCACAAATAGAACCGT 1553
Query 1568 GGTTGCAGTGAAGCAACTTGAAGGAATAGAGCAAGGAGAGAAGCAGTTTAGAATGGAGGT 1627
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1554 GGTTGCAGTGAAGCAACTCGAGGGAATAGAGCAAGGAGAAAAGCAGTTTAGGATGGAGGT 1613
Query 1628 TGCTACCATTAGCAGCACACACCATCTGAATCTAGTCAGACTGATTGGATTTTGCTCCCA 1687
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1614 TGCTACCATTAGCAGCACACACCATCTGAATCTAGTCAGACTGATCGGGTTTTGCTCCCA 1673
Query 1688 GGGAAGACATAGGCTTCTCGTCTATGAGTTCATGAGAAATGGATCTCTCGATAACTTCCT 1747
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1674 GGGAAGACACAGGCTTCTCGTCTATGAGTTCATGAGAAACGGATCTCTTGATAACTTCCT 1733
Query 1748 GTTTACTACTGATTCAGCGAAGTTCTTGACTTGGGAGTATCGGTTTAACATTGCCCTTGG 1807
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1734 GTTTACTACTGATTCAGGGAAGTTCTTGACTTGGGAGTATCGGTTTAGCATTGCGCTTGG 1793
Query 1808 GACGGCTAAGGGAATAACTTACCTCCACGAGGAGTGCCGCGACTGCATTGTACACTGCGA 1867
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GACGGCAAAGGGAATAACTTACCTCCACGAGGAGTGCCGCGACTGCATTGTACACTGCGA 1853
Query 1868 CATTAAACCGGAGAACATTCTCGTAGATGACAATTTTGCTGCCAAAGTCTCGGACTTTGG 1927
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1854 CATTAAACCCGAGAACATTCTCGTGGATGACAATTACGCTGCCAAAGTCTCGGACTTTGG 1913
Query 1928 ACTTGCCAAACTCTTGAACCCAAAAGACAACAGATACAACATGAGCAGTGTTAGAGGAAC 1987
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1914 ACTCGCCAAACTCTTGAACCCAAAAGACAACAGATACAACATGAGCAGCGTTAGAGGAAC 1973
Query 1988 AAGAGGCTATTTAGCTCCTGAATGGCTCGCAAATCTTCCCATAACCTCAAAATCGGATGT 2047
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 AAGAGGCTATTTAGCGCCTGAATGGCTCGCAAATCTTCCCATAACCTCAAAATCGGATGT 2033
Query 2048 CTATAGCTATGGAATGGTCCTACTAGAGCTAGTTAGCGGTAAAAGAAACTTTGATGTCTC 2107
|||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 2034 CTATAGCTATGGAATGGTTCTACTAGAGCTAGTCAGCGGAAAAAGGAACTTTGATGTCTC 2093
Query 2108 GGAGAAAACGAACCACAAGAAATTCTCGATCTGGGCATACGAGGAGTTTGAAAAGGGCAA 2167
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2094 AGAGAAAACGAACCACAAGAAATTCTCGATCTGGGCATTCGAGGAGTTTGAAAAGGGCAA 2153
Query 2168 CACCAAGGCGATCCTAGACACACGTTTAAGCGAAGATCAAACTGTTGATATGGAACAAGT 2227
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 2154 CACCGAGGCGATCCTAGACACACGTTTAGGCGAAGATCAAACTGTTGGTATGGAACAAGT 2213
Query 2228 GATGAGAATGGTTAAGACAAGCTTCTGGTGCATACAAGAGCAGCCATTGCAGAGACCGAC 2287
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2214 GAGGAGAATGGTTAAGACAAGCTTCTGGTGCATACAAGAGCAGCCATTGCAGAGGCCCAC 2273
Query 2288 AATGGGGAAAGTGGTTCAAATGCTAGAAGGAATCACAGAGATAAAGAACCCACTATGTCC 2347
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 2274 AATGGGGAAAGTGGTTCAAATGCTAGAAGGAATCACAGAGATAAAGAAACCGCCATGTCC 2333
Query 2348 AAAGACCATAAGTGAAGTATCGTTTTCAGGGAACAGTATGAGCACGAGCCATGCATCTAT 2407
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2334 AAAGACCATAAGCGAAGTATCGTTTTCAGGGAACAGTATGAGCACAAGCCATGCATCTGT 2393
Query 2408 GTTTGTTGCTTCGGGTCCGACTCGTTCATCTTCTTTTTCTGCTACACGATCGTTTCAGAC 2467
||| |||||||| ||||||||||| ||||| |||| ||||||||||| |||||||||||
Sbjct 2394 GTTGGTTGCTTCAGGTCCGACTCGATCATCCTCTTCGTCTGCTACACGGTCGTTTCAGAC 2453
Query 2468 AATGGGGATCACATCGTCTGGACCAGCTTCCACAAGGATCAGTGAAGGCTCTATGCTTGG 2527
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2454 AATGGGGATCACATCGTCTGGACCGGCTTCCACTAGGATCAGTGAAGGCTCTATGCTTGG 2513
Query 2528 ATCTTAAAAGT-GTTGTATTGTGATTACTAATGTCTAGGTTGTTTTGATTTACTTATTTG 2586
||| ||||| | | ||||||||||||| |||||||||| ||||||| ||||||||||| |
Sbjct 2514 ATCATAAAAATTGCTGTATTGTGATTAGTAATGTCTAGCTTGTTTTAATTTACTTATT-G 2572
Query 2587 CATACGTTATAATTGTATAGGAACACTTCAAAG 2619
||||||||||||||||||||||||||| |||||
Sbjct 2573 CATACGTTATAATTGTATAGGAACACTGCAAAG 2605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99682171165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5