BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34320.1
Length=2718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473586 jgi|Araly1|473586|fgenesh2_kg.1__3540__AT1G34320.1 3441 0.0
> Ahg473586 jgi|Araly1|473586|fgenesh2_kg.1__3540__AT1G34320.1
Length=2544
Score = 3441 bits (1863), Expect = 0.0
Identities = 2224/2391 (93%), Gaps = 53/2391 (2%)
Strand=Plus/Plus
Query 362 ttttttGCGTATGGAGAGTTTCGAGAGAG-----TTT-GAGAGCTAAATTTGGAAACTTG 415
||||||||||||||||||||||||||||| ||| || | | |||||||| ||||||
Sbjct 167 TTTTTTGCGTATGGAGAGTTTCGAGAGAGTTTAATTTGGATAAC-AAATTTGGTAACTTG 225
Query 416 CTGTGATGGGTGGGCTTTGTTCAAGGAGTTCATCTGTAAATAATGCTCCTGGTGGAACCT 475
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 226 TTGTGATGGGTGGGCTTTGTTCGAGAAGTTCATCTGTAAATAATGCTCCTGGTGGAAGCT 285
Query 476 TTGCACATGTTAATGGTCATCATCTCAATAAC---AATGCCTCTGACTTGAATTCTCA-- 530
|||||||||||||||| ||||||||||||| |||| ||||| |||||| |||
Sbjct 286 TTGCACATGTTAATGG---TCATCTCAATAACAGTAATGGGTCTGAAGTGAATTTTCAGT 342
Query 531 -TTCTGGTGAA---AGTGGACTTAAAGA------TGATCCTTCTCCTGTTACCGAGAATG 580
|||||||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 343 CTTCTGGTGAAGGTGGTGGAGAGAAAGATGTTGCTGATCCTTCTCCTGTTAGGGAGAATG 402
Query 581 T---TGATGATAATAAGCATACATCGGAATCGTTTTCGTTTCCTATAGTCTCTAGTGGAT 637
| | || ||||||| ||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 403 TGGATAATAATAATAAACATACTTCGGAATCGTTTTCTTTTCCTATAGTCTCTGGTGGAT 462
Query 638 CTCATCCTCAAAATATCGAGGATGGGATTCCTCGGTTATCGAGGGTTTTATCTCAGAAAT 697
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 463 CTCATCCTCAAAATCTCGAGGATGGGATTCCTCGGTTATCAAGGGTTTTATCTGAGAAAT 522
Query 698 CTAGATCCACTAAGTCTAGACAAGCTGCTGTTGCTAAGGTTTCGGAAGTAAGCTCTCTTT 757
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 523 CTAGATCCACTAAGTCTAGACAAGCTGCTGTAGCTAAGGTTTCGGAAGTAAGCTCTCTTT 582
Query 758 TGGGTAGGGCTGGTACTATGGGACTTGGTAAAGCTGTGGATGTGTTGGATACACTCGGGA 817
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 TGGGTAGAGCTGGTACTATGGGACTTGGTAAAGCTGTGGATGTGTTGGATACACTTGGGA 642
Query 818 GTAGTATGACGAATCTGAATCTTAGTGGGGGGTTTTCTTCTGCGACGACGGTGAAAGGGA 877
|||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 643 GTAGTATGACGAATTTGAATCTTAGTGGCGGGTTTTCTTCTGCGACGACAGTTAAAGGGA 702
Query 878 ATAAGATATCAATCTTGTCTTTTGAAGTTGCTAATACTATTGTTAAAGGCGCCAATCTTA 937
|||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 703 ATAAGATATCTATCTTGTCGTTTGAAGTTGCTAATACTATTGTTAAAGGTGCTAATCTTA 762
Query 938 TGCATTCTCTTTCGAAAGATAGCATTACTCATTTGAAAGAGGTTGTGTTACCTTCAGAAG 997
|||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 763 TGCATTCTCTTTCGAAAGATAGTATTACTCATTTAAAAGAGGGAGTGTTACCTTCAGAAG 822
Query 998 GTGTTCAGAACCTGATATCGAAAGACATGGATGAACTGTTGAGAATTGCTGCTGCTGATA 1057
||||||| || | ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 823 GTGTTCAAAATTTAATATCGAAAGATATGGATGAACTGTTGAGAATTGCTGCTGCGGATA 882
Query 1058 AAAGGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AAAGGGAAGAGTTGAGGATTTTTTCTGGAGAGGTGGTGCGTTTTGGGAATCGTTGCAAGG 942
Query 1118 ATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGGTTGGGCTCTGAATTTACACCCC 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATCCTCAATACCACAACCTGGATCGTTTCTTTGACAGGTTGGGCTCTGAATTTACACCCC 1002
Query 1178 AGAAACACTTGAAACAGGAAGCAGAGACCATTATGCACCAGATGATGTCATTTGTTCATT 1237
||||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1003 AGAAACATTTGAAAGAGGAAGCAGAAACCATAATGCACCAGCTGATGTCATTTGTTCATT 1062
Query 1238 TTACAGCTGACTTGTATCATGAACTCCATGCGCTGGATAGGTTTGAACAAGATTACCAAC 1297
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1063 TTACAGCTGACTTGTATCATGAGCTCCATGCGCTGGATAGGTTTGAACAAGATTACCAAC 1122
Query 1298 GTAAGATCCAGGAAGAAGAGAACCCAAGCACAGCACAACGAGGTGTGGGAGATACCCTCG 1357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 GTAAGATCCAGGAAGAAGAGAACCCAAGCACAGCACAACGAGGTGTAGGAGATACCCTCG 1182
Query 1358 CTATCTTGAGAACTGAATTAAAGAGTCAGAAGAAGCATGTTAGAAACTTAAAGAAAAAGT 1417
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1183 CTATCTTGAGAACAGAATTAAAGAGTCAGAAGAAGCATGTAAGAAACTTAAAGAAAAAAT 1242
Query 1418 CTCTTTGGTCTAGGATCTTGGAAGAGGTGATGGAGAAACTAGTAGATGTTGTCCATTTCT 1477
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1243 CTCTTTGGTCTAGGATCTTGGAAGAGGTGATGGAGAAACTCGTAGATGTTGTCCATTTTT 1302
Query 1478 TGCATTTAGAGATTCACGAAGCCTTTGGTGGTGCGGATCCTGATAAGCCTGCAAATGACC 1537
||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1303 TGCATTTGGAGATTCATGAAGCCTTTGGTGGTGCGGATCTTGATAAGCCTGCAAATGACT 1362
Query 1538 CGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCA 1597
| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1363 CACCAATCAATCATAAAAAGTTAGGCTCTGCTGGTCTTGCCTTACATTACGCAAACATCA 1422
Query 1598 TTACTCAAATTGATACTCTTGTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATG 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TTACTCAAATTGATACTCTTGTGTCCCGGTCTAGCACTATGCCTGCAAGCACAAGAGATG 1482
Query 1658 CTTTGTACCAAGGTTTACCCCCAAGCATAAAATCTGCTTTACGCTCCAGAATACAGTCCT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CTTTGTACCAAGGTTTACCCCCAAGCATAAAATCTGCTTTACGCTCCAGAATACAGTCCT 1542
Query 1718 TCCAGGTTAAAGAAGAGCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGC 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1543 TCCAGGTTAAAGAAGAGCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACGTTGC 1602
Query 1778 AGTGGCTTGTTCCTGTTGCTACAAACACCACCAAAGCGCATCATGGTTTTGGATGGGTTG 1837
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1603 AGTGGCTTGTTCCTGTTGCTACAAACACTACCAAAGCGCATCATGGGTTTGGATGGGTTG 1662
Query 1838 GAGAATGGGCAAGTTCCGGGTCGGAGGCGAACCAGAGACCTGCAGGTCAAACCATACTAA 1897
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1663 GAGAATGGGCAAGTTCCGGGTCAGAGGCGAACCAGAGACCTGCAGGTCAAACCATACTAA 1722
Query 1898 GGATAGATACTCTTCACCATGCAGATAAAGAAAAAACCGAGGCTTACATATTAGACCTGG 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 GGATAGATACTCTTCACCATGCAGATAAAGAAAAAACCGAGGCTTACATATTAGACCTGG 1782
Query 1958 TGGTGTGGCTCCATCATCTCGTTACCCAAGTCAGGGCCACTACAGGTTATGGCCTAAGAT 2017
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 TGGTGTGGCTTCATCATCTCGTTACCCAAGTCAGGGCCACTACAGGTTATGGCCTAAGAT 1842
Query 2018 CTCCTGTTAAGTCTCCAATCAGATCACCTAACCAGAAAACGATCCAACTCTCCAGCGGTT 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CTCCTGTTAAGTCTCCAATCAGATCACCTAACCAGAAAACGATCCAACTCTCCAGCGGTT 1902
Query 2078 CACACAACCCGAGTATGGGTT-TGCCATTGCTGACTACGGAGGATCAAGAGATGCTTAGA 2136
|||||||||| ||| |||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1903 CACACAACCCAAGTCTGGGTTCT-CCGTTGCTGACTACGGAGGATCAAGAGATGCTTAGA 1961
Query 2137 GATGTAAGCAAGCGGAGAAAGACGCCAGGAATAAGCAAGAGCCAAGAGTTTGAAACGGTG 2196
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GACGTAAGCAAGCGGAGAAAGACGCCAGGAATAAGCAAGAGCCAAGAGTTTGAAACGGTG 2021
Query 2197 GCTAAAGCACGTCTTTGTAAGCACCATAGGCTAAGCAAAAGCAGTAGCCACTCACCAATG 2256
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2022 GCTAAAACACGGCTTTGTAAGCACCATAGGCTAAGCAAAAGCAGTAGCCACTCGCCGATG 2081
Query 2257 ATGGGCGAGATGATGAAGAATAAGAAGGATACTTTCTCAACCAGAAGACCTTCTTCTGTT 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 ATGGGCGAGATGATGAAGAATAAGAAGGATACTTTCTCAACCAGAAGACCTTCTTCTGTT 2141
Query 2317 CCCATCATTGATTTTGACATTGATCGCATGAAAGCTCTCGATGTGATTGATCGCGTGGAC 2376
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2142 CCCATCATCGATTTTGACATTGATCGCATGAAAGCCCTCGATGTGATTGATCGCGTGGAC 2201
Query 2377 ACCATTCGAAGCTTGTAGTTAACTACTTCCACTCCATCAGAGTTCAGAA-TAGGGGT-TG 2434
|||||||||||||||||||||| ||||||||| ||||| |||||||||| | ||| | |
Sbjct 2202 ACCATTCGAAGCTTGTAGTTAAATACTTCCACACCATCGGAGTTCAGAAATTGGGATGTA 2261
Query 2435 AATGGATGGGAAACACCACTCTC--TTATCACCAAAAGTT--GTTGATATGATGAAGAAT 2490
|| | | | ||| ||||| ||| |||||| ||||| |||||| ||| | ||||
Sbjct 2262 AA-G-A-GT-AAAGACCACACTCACTTATCATCAAAACAAAAGTTGAT--GAT-ATGAAT 2314
Query 2491 CTGAATGTGATTCATCGCAC-GGTGCCATCGAAACCCTTTATAGGTGATGAAAAAATGGC 2549
| ||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 2315 CGGAATGCGATTGATCCCACAGGTGCCATCGAAACCTTTTATAGGTGATGAAAAATTGGC 2374
Query 2550 AGAGGTTAGTA--A-CTTTGTACTCtttttggtttttgtgggtgtaatttggtttggttt 2606
|||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AGAGCTTATTAGTATCTTTGTACTCTTTTTGGTTTTTGTGGGTGTAATTTGGTTTGGTTT 2434
Query 2607 tttagcatttcctttgtatttgttgttctttttcttctt--a---tagttgtattgTGTA 2661
| |||||||||||||||||| ||||||||||||||| || | |||||||||||||||
Sbjct 2435 TGTAGCATTTCCTTTGTATT-GTTGTTCTTTTTCTTGTTGTAGACTAGTTGTATTGTGTA 2493
Query 2662 CATACAAGAAACTTTATTACATATGTTTGGAGAATAAAAATAGATTATCTT 2712
|||||||||||| ||| ||||||| ||| ||||||||||||| || |||||
Sbjct 2494 CATACAAGAAACGTTACTACATATATTTCGAGAATAAAAATATATGATCTT 2544
Score = 226 bits (122), Expect = 7e-58
Identities = 162/179 (91%), Gaps = 12/179 (7%)
Strand=Plus/Plus
Query 19 ctctctctctctttctcgagtcgcgtttcttcttctcttttcCTTGTAGACATCTCCACG 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTTTCTCGAGTCGCGTTTCTTCTTCTCTTTTCCTTGTAGACATCTCCACG 60
Query 79 ATTCTTCAGCTGAGAGCTTCTCACTTCTCTCTAGAGCTT-TGCTCAAGAACTAGCGACga 137
||||||||||| ||| ||| ||||||||||||| ||||| | |||||| | | ||| |
Sbjct 61 ATTCTTCAGCTCAGAACTTGTCACTTCTCTCTACAGCTTAT-CTCAAGTA-T--CGA--A 114
Query 138 agaagaagaagaagaaTCTGAACTTCAATCTAATTCCCAGATCCAAGTTTCTGACTCTT 196
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 115 -GAAGAAGAAGAA---TCTGA-CTTCAATCTAATTCCCAGATCCAAGTTTCTGACTCTT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102538939540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5