BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34340.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473587 jgi|Araly1|473587|fgenesh2_kg.1__3541__AT1G34340.1 2542 0.0
> Ahg473587 jgi|Araly1|473587|fgenesh2_kg.1__3541__AT1G34340.1
Length=1671
Score = 2542 bits (1376), Expect = 0.0
Identities = 1593/1695 (94%), Gaps = 25/1695 (1%)
Strand=Plus/Plus
Query 17 aaaaaaTCTTCACCCGCCACTGAACCATGAAGAAGAAGATCCTTCTCTAATTCCTATCGC 76
|||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 1 AAAAAATCTTCACCCGCCACTGAACCAT---GAAG--G-TCCTTCTCTAATTCTTATCGC 54
Query 77 CGGATCTGCAAAAACAAATCACAAATCAAATCAATGGAAGAAGAAGATCTGATTCTATCT 136
|||||||| || ||| |||||||| | ||| |||||| ||||||||||
Sbjct 55 CGGATCTG-----------CA-AAA--AAATCAAT-G--GAACAAGATCCGATTCTATCT 97
Query 137 CCATCTCCATACGATCTTCTCTTTCAAGCTCTAACTCTCATCCCGATTCGTCACTACCTC 196
||||||||||||||||||||||| ||||||||| | || ||||| |||||||||||||||
Sbjct 98 CCATCTCCATACGATCTTCTCTTCCAAGCTCTATCACTAATCCCAATTCGTCACTACCTC 157
Query 197 ATCGCTCTCTTCGTTCTCTGTACCATCTTCTTCTACAATTTCGTCGAATTTCACTTCCTT 256
|||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 158 ATCGCTCTCTTCCTTCTCTGGACCATCTTCTTCTACAATTTCCTCGAATTTCACTTCCTT 217
Query 257 GGAGATGCGATTCTTCGTTATTTCAGATGTCGCGTCAATCTCATTTACAATCCAGATTCT 316
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 218 GGAGATGCGATTCTTCGATATTTCAGATGTCGAGTCAATCTCATTTATAATCCAGATTCT 277
Query 317 CCTCTTTATCACGGTGTTGTTTCTCGGTGTCAGATTCTTCACGGCCGATATGTGGCGACG 376
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 278 CCTCTTTATCACGGTGTTGTTTCACGGTGTCGGATTCTTCACGGCCGATATGTGGCGACT 337
Query 377 CCATGGTTAGCGAGCCCTCATATTCAGACTTGTTTCTTGAATTTCCATGGATTGCCTCCA 436
|| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 338 CCGTGGTTAGCAAGTCCTCATATTCAGACTTGTTTCTTGAATTTTCATGGATTGCCTCCA 397
Query 437 GTTTTCACCTATACAAGACAGCTATTTCTTACTTCTGATGGTGGAACGATTGCATTAGAT 496
||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 398 GTTTTCAGCTATAAAAGGCAGCTATTTCTTGCTTCTGATGGTGGAACGATTGCATTGGAT 457
Query 497 TGGCTTACGAATTCTGATGTTCTTGATGGTTCTCTTCACAATAAGAGTGAAATTACAAAA 556
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 458 TGGCTTACGAATTCTGATGTTCTTGATGGTGCTCTTCATAATCAGAGTGAAATTACAAAA 517
Query 557 GAAGATACAACGCCTATAGCTGTTGTTATTCCAGGGTTAACTAGTGATTCTTCATCTGCA 616
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 518 GAAGATACAACGCCTATTGCAGTTATTATTCCAGGGTTAACTAGTGATTCTTCATCTGCA 577
Query 617 TATTTAAAGCATCTTGCTTACGACACTGCAAAAACAGGTTGGAATGTTGTTATTAGCAAC 676
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 578 TATTTAAAGCATCTTGCTTACAACACTGCAAAAACAGGTTGGAATGTTGTTATTAGCAAC 637
Query 677 CATAGAGGATTGGGAGGAGTTTCTGTTACTTCAGATTGCTTCTATAATGCTGGATGGACA 736
|||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 638 CATAGAGGATTGGGCGGTGTTTCTGTTACATCAGATCGCTTCTATAATGCTGGATGGACG 697
Query 737 GATGATATAAGGGTAGTTCTTGATTATCTTCAACACAAATACCCGAGGGCTCCTCTCTTT 796
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GAGGATATAAGGGTAGTTCTTGATTATCTTCAACACAAATACCCGAGGGCTCCTCTCTTT 757
Query 797 GCTATTGGCACTAGCATTGGAGCAAATGTTCTGGTAAAATACCTTGGGGAAGAGGGTGAA 856
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 758 GCTATTGGAACTAGCATTGGAGCAAATGTTCTGGTCAAATACCTTGGGGAAGAGGGTGAA 817
Query 857 AAGACTCCTCTGAGAGGTGCTGTTGCTATCTGCTCTCCATGGGACCTCTTGATTGGTGAC 916
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 818 AAGACTCCTCTGAGGGGTGCTGTAGCTATTTGCTCTCCATGGGACCTCTTGATTGGTGAC 877
Query 917 AGGTTTATCTGTCGGACTTTGAAACAAAAGCTCTATGACAAAGCTCTCACCATCGGACTC 976
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 878 AGGTTTATTTGTCGGACGTTGAAACAAAAGCTCTACGACAAAGCTCTCACCATCGGACTC 937
Query 977 CAAGGTTATGCCCAATTGCATGAACCTCAGTTTTTACGGCTTGCTAATTGGGAAGGCATC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CAAGGTTATGCCCAATTGCATGAACCTCAGTTTTTACGGCTTGCTAATTGGGAAGGCATC 997
Query 1037 AAAAAGTCACGTTCCATCCGAGATTTTGACAACCATGCTACCTGTCTAGTTGGAAAATTC 1096
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 998 AAAAAGTCACGTTCCATCCGCGATTTTGACAACCATGCTACGTGTCTAGTTGGAAAATTC 1057
Query 1097 GAGACTGTGGATACGTATTACCGAAAATCGAGCAGCACTCAATACGTAGGAAATGTGGCG 1156
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1058 GAGACTGTGGATACGTATTACCGAAAATCGAGCAGTACTCAATACGTAGGAAATGTGGCG 1117
Query 1157 GTGCCACTACTCTGTATAAGTGCTCTAGATGATCCATTATGCACAAAGGAAGCTATTCCC 1216
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 GTGCCGCTACTTTGTATAAGTGCTTTAGATGATCCATTATGCACAAAGGAAGCTATTCCC 1177
Query 1217 TGGGACGAATGCAGGGCCAACAAAAACATTGTCTTGGCTACAACAAATCACGGGGGACAT 1276
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1178 TGGGACGAATGCAGGGCAAACAAAAACATTGTATTGGCTACAACAAATCACGGGGGACAT 1237
Query 1277 CTAGCGTTCTTCGAAGGATTAACTGGATCTAGCTTATGGTGGGTTCGAGCCACCAACGAG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CTAGCGTTCTTCGAAGGATTAACTGGATCTAGCTTATGGTGGGTTCGAGCCACCAACGAG 1297
Query 1337 TTTCTTGGCGTCCTTAGCTGCAGTCCTTATATGCATATACAGAAAATTGTAGATAAAAGA 1396
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1298 TTTCTTGGTGCCCTTAGCTGCAGTCCTTATATGCATATACAGAAAATTGAAGATAAAAGA 1357
Query 1397 AGCTCAGGGTCAGGGAAACAAGAGCCATCGATAAACCAAGGCCCGTACCTAAACATTGCA 1456
|||||||||||| ||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1358 AGCTCAGGGTCAAGGAAAGAGGAGCCTTCGATAAACCAAGGCCCATACCTAAACATTGCA 1417
Query 1457 GAAGACGGGTTGGTGGCAGCAGTCAAATATGAGCAAGACACCAATAAGACCACA-CTGAA 1515
|||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct 1418 GAAGACGGGTTGGTGGCAGCAGTCAAGTACGAGCAAGACACCAATAAGACCACATC-GAA 1476
Query 1516 GCAGAGAGGGCGAAAGCCTGAGGAAGATGTAACAAAGAAAAGCTTTAAAGAGCTGTGTAG 1575
||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1477 GCAGAGAGGACGAAAGCCTGAGGAAGATGTAACAAAGAGAAGCTTTAAGGAGCTGTGTCG 1536
Query 1576 GCAGACAAAACAGTCGGTATGGTGGCTTGGTTACATAGGCATGGTTACAAGTTTCCCTTT 1635
||||||||||| ||| ||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1537 GCAGACAAAACGGTCTGTATGGTGGCTTGCTTACATAGGCGTAGTTACAAGTTTCCCTTT 1596
Query 1636 ACTTGGGATGCTCCTAAACTACATCTTCCGTAAGAAGCAACGACCCACAACAACATCCAC 1695
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 ACTTGGAATGCTCCTAAACTACATCTTCCGTAAGAAGCAACGACCCACAACAACATCCAA 1656
Query 1696 ATCCTGAAGTTGCTT 1710
||||| |||||||||
Sbjct 1657 ATCCTAAAGTTGCTT 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5