BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34350.2
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473588 jgi|Araly1|473588|fgenesh2_kg.1__3542__AT1G34350.1 580 4e-165
> Ahg473588 jgi|Araly1|473588|fgenesh2_kg.1__3542__AT1G34350.1
Length=775
Score = 580 bits (314), Expect = 4e-165
Identities = 389/422 (92%), Gaps = 18/422 (4%)
Strand=Plus/Plus
Query 482 TGGCTGGGGTATACTTTGCAGAGAATCTCAACCGGGAGTTGAGGAAAAACTGGAAGAGCT 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TGGCTGGGGTATACTTTGCAGAGAATCTCAACCGGGAGTTGAGAAAAAACTGGAAGAGCT 418
Query 542 TCTCAACTCAAAACTACTTTGACTCG-AACGGAGTCTTCCTATCGACTCTCTGGTCTGGA 600
|||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 419 TCTCAACTCAAAACTACTTTGACTCGCAA-GGAGTCTTCCTATCGGTTCTCTGGTCTGGA 477
Query 601 CCACTTTTGGTCATTGCAATGATAATCCTGATAAACACACTCTTTTCGCTTTGCTACTTA 660
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 478 CCACTTTTGGTCATTGCTATGATAATCCTGATAAACACACTGTTTTCGCTTTGCTACCTA 537
Query 661 ATCGTAAAGTGGAAAAGAGCTGAGCTCAGGCATCGCGCAAGGCTTGCTCATACCAAGGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 ATCGTAAAGTGGAAAAGAGCTGAGCTCAGGCATCGCGCAAGGCTTGCTCGTACCAAGGAG 597
Query 721 GAAT-GATCCCACtttttt-tAATCTCACATTTATGTATACTCTCACACAATGCATCAAA 778
|||| |||||||||||||| || |||||||||||||||||||||||| |||| ||||
Sbjct 598 GAATAGATCCCACTTTTTTATA-TCTCACATTTATGTATACTCTCACTT--TGCAACAAA 654
Query 779 ACTGTTTTGAG-TTTTT--TAG-----TAGAAGCTGCTCTTTT-ATGTATTTCGTTTTCA 829
|||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |
Sbjct 655 -CTGTTTTGAGGTTTTTAGTAGAAGGCTAGAAGCTGCTCTTTTTATGTATTTCGTTTTTA 713
Query 830 ATTGAATCGAATTGTATCAAA-CCGAACCAAACCAAATTATTCTACTTCGGTCTGTTATG 888
||||||| ||||||||||||| ||||||||||||| ||||||||| |||||| |||||||
Sbjct 714 ATTGAATTGAATTGTATCAAAACCGAACCAAACCAGATTATTCTATTTCGGTTTGTTATG 773
Query 889 GT 890
||
Sbjct 774 GT 775
Score = 433 bits (234), Expect = 1e-120
Identities = 246/252 (98%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 155 AGACAATGGAAGAAATAAGATCGGCGATGGAGAAGCAAGTGGATCTCGTAGCGGATCTGG 214
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 107 AGACAATGGAAGAAATAAGATCGGCGATGGAGAAGCAAATGGATCTCGTAGCGGATCTGG 166
Query 215 TTGAGAAACTCTCCGGAGAGCTCCGAACGGGGTTTCAACCTGCTTACGATAATTTCTTGG 274
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 167 TTGAGAAACTCTCCGGAGAGCTCCGAACGGGGTTCCAACCTGCTTACGATAATTTCTTGG 226
Query 275 GGTTTTTCCACGCCATTGATTGGAAGGAACCTTGGATTATGGGTTTAATGGCGTTTCATG 334
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GATTTTTCCACGCCATTGATTGGAAGGAACCTTGGATTATGGGTTTAATGGCGTTTCATG 286
Query 335 CTTTGTTGTTACTAGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTCCTCT 394
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 287 CTTTGTTGCTACTGGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTTCTCT 346
Query 395 TCTTATTGGCTT 406
||||||||||||
Sbjct 347 TCTTATTGGCTT 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5