BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34355.1
Length=4595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473589 jgi|Araly1|473589|fgenesh2_kg.1__3543__AT1G34355.1 2532 0.0
> Ahg473589 jgi|Araly1|473589|fgenesh2_kg.1__3543__AT1G34355.1
Length=4511
Score = 2532 bits (1371), Expect = 0.0
Identities = 1697/1853 (92%), Gaps = 27/1853 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAGGAAGAGAAACTGATGGAGG-AGAAGCAACGATTGCCGGAGAAGACGA- 58
||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGAGGTCAAGGAAGAGAAAGTGATGGAGGAAG-AGCAACGATTGCCGGAGAAGACGAT 59
Query 59 TCCCTGTGTTCACCGTTCTGAAAAACGGCGCTATTCTCAAGAATATCTTCGTTGTGAACA 118
|||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 60 TCCC-GTGTTCACCGTGCTTAAAAACGGCGCGATTCTCAAGAACATCTTCGTTGTGAACA 118
Query 119 GTCGCGATTTCTCGTCGCCGGAGAGAAACGGTTCCACTGTAAGCGATGATGACGGTGAAG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 GTCGCGATTTCTCGTCGCCGGAGAGAAACGGTTCCACTGTAAGCGATGATGACGACGAAG 178
Query 179 TAGAAGAGATTCTCGTCGTCGGTCGTCATCCAGATTGTGATATTCTTCTTACGCACCCTA 238
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TAGAGGAGATTCTCGTCGTTGGTCGTCATCCAGATTGTGATATTCTTCTTACGCACCCTA 238
Query 239 GCATTAGCAGATTCCACTTAGAAATCCGCTCGATCTCTTCTCGTCAGAAACTCTTCGTCA 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 GCATTAGCAGATTCCACTTAGAAATCCGTTCGATCTCTTCTCGTCAGAAACTCTTCGTCA 298
Query 299 CGGATCTATCCTCTGTGCATGGGACTTGGGTTAGGGATCTTAGAATCGAGCCACATGGTT 358
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 299 CGGATCTATCCTCAGTGCATGGGACTTGGGTTAGGGATCTGAGAGTCGAGCCACATACTT 358
Query 359 GTGTTGAGGTTGAAGAAGGTGATACGATTAGGATTGGTGGTTCAACAAGGATCTATAGGC 418
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTATCGAGGTTGAAGAAGGTGATACGATTAGGATTGGTGGTTCAACAAGGATCTATAGGC 418
Query 419 TTCACTGGATTCCGTTGAGCCGTGCGTATGAT-TTAGACAATCCGTTTGTTTCACCACTT 477
||||||||||||| |||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 419 TTCACTGGATTCCTTTGAGCCGTGCGTATGATATT-GACAATCCGTTTTTTTCACCACTT 477
Query 478 GATGCGTCTACGGTGTTGGAGCAAGAAGAAGAGAATAGAATGCTTGAAGCAGAAAATCTA 537
|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 478 GATGCGTCTACGGTAATGGAGCAAGAAGAAGAGAATAGAATGATTGAAGCAGAGAATCTA 537
Query 538 GAGGTAGCACAACATCAGTCACTAGAGAATACTACATCAGGTGATGA-GGGAGTTCTGCA 596
|||||| |||||||||||||||||||||||||| ||||||||||||| ||| | | | ||
Sbjct 538 GAGGTACCACAACATCAGTCACTAGAGAATACTGCATCAGGTGATGATGGG-GATATACA 596
Query 597 TCTAGATGTCACGTCAGAAGGAACTGGATCATCAGTTCCT-AGTGAGGATGAGGAT-A-- 652
||| ||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 597 TCTGGATGTGACTTCAGAAGGAACTGGATCATCAGT-CCTTAGTGAGGATGAGGATGAGG 655
Query 653 ---CGTATGTTACGACAAGGGAGATGTC-TATGCCAGTTGCGTCTCCAAGTGTTTTGACG 708
||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||
Sbjct 656 ATACGTATGTTACGACAAGGGAGATGTCGT-TGCCACTTGCGTCTCCAAATGTTTTGACA 714
Query 709 CTAGTTAGAGATTCTGTCGAGACACAAAAGCTACAATTCAATGAAGATTTGCAGACTTCA 768
|||| | ||||||||||| ||||| ||||| | |||||| |||||||||||||||||||
Sbjct 715 CTAGCTGGAGATTCTGTCAAGACAAAAAAGATGCAATTCGATGAAGATTTGCAGACTTCG 774
Query 769 CCAAAGTGGGACTTGGATGTTATAGAATCTGTAGCAGAGAAGCTAAGTGGCAGCTTTGTC 828
||||||| |||||| |||||||| ||| |||||| ||| |||||| || |||||||||||
Sbjct 775 CCAAAGTTGGACTTAGATGTTATGGAAGCTGTAGGAGAAAAGCTAGGTAGCAGCTTTGTC 834
Query 829 CGTAGTACGCAGCAGAGTGGTGGCGACGTGGAGGGATTAGGTTGTTCTGAACTTTTTGAT 888
| |||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 835 CCAAGTAAGGAGCAGAGTGATGGCTACGTGGAGGGATTAGGTTGTTCTGAACTTTTTGTT 894
Query 889 GCTGCAGAGGCGGATGAATGTGATGTCAGAGGAGATGGAGGCTTGCATCTGAATGTGATA 948
|||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 895 GCTGAAGAGGCCGATGAATGTGATGTCAGAGGAGATGGAAGTTTGCATCTGAATGTGATA 954
Query 949 TCAGAAAAGATGGAGTCATCAGTGCCTAATATGATTGAAGCAGAAAATCTAGAGGTTGCA 1008
||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 955 TCAGAGAGGATGGAATCATCAGTGCCTAATATGACTGAAGCAGAAAATCTAGAGGTTGCA 1014
Query 1009 CAACATCAGTCACTAGCGAATACTGCATTAGGTGATGATGAAGATCTACATCTGGATGTG 1068
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 CA---TCAGTCACTAGCGAATACTGCATTAGGTGATGATGGAGATCTACATCTGGATGTG 1071
Query 1069 ACGTCAGAAGGAACTGGATCATCAGTCCCTAGTGAAGATGAGGATACATATATTACGACA 1128
|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1072 ACGTCAGAAGGACCTGGATCATCAGTCCTTAGTGAAGATGAGGATATATATATTACGACA 1131
Query 1129 ATGGAGATTTCGGTTCCACTTGCATCTCCAAATGTTTTGACACTAGCTAGAGATTCTATC 1188
| |||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||
Sbjct 1132 AGGGAGATTTCGGTTCCACTTGCATCTCCAAATGTTTTGACACTGGTTAGAAATTCTGTC 1191
Query 1189 AAGACGCAAAAGCTACAATCCACTCAAGATTTTCAGACACCGACAATGTGGGACTTAGAT 1248
|||| |||||||||||||| || | ||||||| ||| || | ||||||||||||||||||
Sbjct 1192 AAGATGCAAAAGCTACAATTCAATGAAGATTTGCAGCCATCAACAATGTGGGACTTAGAT 1251
Query 1249 GTTGTAGAAGCTGCAGCAGAGAAGCCAAGTAGCAGCTGCGTTCTAGGTAAGAAGCTGAGT 1308
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||
Sbjct 1252 GTTGTAGAAGCTGCAGCAGAGAAGCCAAGTAGCAGCTGTGTCCTAGGTAAGCAGCAGAGT 1311
Query 1309 GGTGGCTATGTGGAAGAATTAGGTTGTTTTGAACTTTTTGTTGCTGCAGAGGCTGATAAA 1368
|||||||| ||||||| |||||||| || ||||| |||||| ||||||||||||||| ||
Sbjct 1312 GGTGGCTACGTGGAAGGATTAGGTTATTCTGAACGTTTTGTAGCTGCAGAGGCTGATGAA 1371
Query 1369 TGCGAT----G--TCAGAGGAGATGGAAGTTTACATCTGAATGAGATATCAGAGAGGATG 1422
|| ||| | |||||||||||||| |||| |||||||||| ||| |||||||||||
Sbjct 1372 TGTGATTTCAGAGTCAGAGGAGATGGAGGTTTTCATCTGAATGTGATGTCAGAGAGGATA 1431
Query 1423 GAATCATCAATGTCTAATAAGGAGGATGATCCATTTCTAGCTGCAAAGGAGACTTCATCG 1482
||||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 1432 GAATCATCAGTGTCTAATGAGGAGGAGGATCCCTTTCTAGCTGAAAAGGAGACTTCATCG 1491
Query 1483 CTTCCACTCTCAACAGATTTCATTAATCCAGAAACACTATGGCTCGTGGAAGATGTTCAG 1542
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1492 CTTCCACTCTCAACAGATTCCATTAATCCAGAAACACTATGGCTCACGGAAGATGTTCAG 1551
Query 1543 GCTTCACCAGAGTTTTGCACAAGTAGTGTAAAAGCCAACGCTGAAAATCCAAGTAGTGGC 1602
|||||||||||||||| |||||||||| || |||||||||| ||||||| ||| | ||
Sbjct 1552 GCTTCACCAGAGTTTTCCACAAGTAGTTTAGAAGCCAACGCCGAAAATCTTAGTGGCAGC 1611
Query 1603 TGCTCCCCAAGTACGGAGCAGATTGATGGCTGCTTTGAAACCTCAGGTTGTTCTGCATTT 1662
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1612 TGCTCCCCAAGTAAGGAGCAGATTGATGGCTGCTTTGAAGCCTCAGGTTGTTCTGCATTT 1671
Query 1663 GACTTGGCTGCAGAGGTTGAGAGTCTTAGCCTTCATCAAGAAGTCAGTGAAGAAACTGAA 1722
|| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 1672 GAGTTGGCTGCAGAGGTTGAGATTCTGAGCCTTCATCGAGAAGTCAGTGAAGAAACTGAG 1731
Query 1723 TTTGTCACAAAGGAAGTAATGGGAGTATCTTCTGAACCACTAGGTAAAGCTGATATTCGG 1782
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 1732 TTTGTCACAAAGGAAGTAATGGGAGTATCTGCTGAACCACTAGCTAAAGCTGATATTCTG 1791
Query 1783 AGTCACGAAGAGAATGGAGAAAGTGAGGACTCAAGGCAAGTTATTGAAGTATC 1835
||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1792 AGTCACGAAGAAAATGGAGAAACTGAGGGCTCAAGGCAAGTTATTGAAGTATC 1844
Score = 1489 bits (806), Expect = 0.0
Identities = 953/1022 (93%), Gaps = 17/1022 (2%)
Strand=Plus/Plus
Query 3575 AACCTCTACTTGAAAAATCTTCTTTCCAAAGTCAGTCATACACTGAGGCTTCTTCAACTG 3634
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 3497 AACCTCTACTTGAAAAATCTTCGTCCCAAAGTCAGTCATACACTGAGGCTTCTTCTACTG 3556
Query 3635 CATCAGCAAGGAATAATATTTCTAGGGGCATTCGTTCCTCTTCTAAT-CTTTCTGATGCA 3693
||||||||||||| || |||||||||||||||||||| |||||| || |||||||||| |
Sbjct 3557 CATCAGCAAGGAACAACATTTCTAGGGGCATTCGTTCTTCTTCT-ATCCTTTCTGATGGA 3615
Query 3694 AAGAGCAAGATGAAGTGGACCATTGTTTTGGATACTTCTTCACTCCTCGACAAAGAGTCT 3753
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 3616 AAGAGCAAGATGAAGTGGACCATTGTTGTGGATACTTCTTCACTCCTCGACAAGGAGTCT 3675
Query 3754 AGGAAGCCACTGCA-GTTACTACAAGGTCTCAAGGGGACACATCTGGTCGTACCAAGAAC 3812
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3676 AGGAAGCCACTGCACG-TACTACAAGGTCTCAAGGGGACACATCTTGTCGTACCAAGAAC 3734
Query 3813 TGTGTTAAGGGAACTAAATGAGGTGAAGCGCAGTCGCAGTTTTCTCTTTAGAAGAAGAAC 3872
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 3735 TGTGTTAAGGGAACTAAATGAGGTGAAGCGCAGTCGTAGTTTTCTCTTCAGAAGAAGAAC 3794
Query 3873 AGAGATTGCTTCTTCAGCTCTGGACTGGATCGAAGAATGTAAGGTTAATTCAAAATGGTG 3932
|||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3795 AGAGATGGCTTCGTCAGCTCTGGACTGGATCGAAGAGTGTAAGGTTAATACAAAATGGTG 3854
Query 3933 GATTCAAGTCCAGAGTCCAACAGAAGAAACCAAAGCAATTGCACCAACCCCACCAGTCAC 3992
||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct 3855 GATTCAAGTCCAGAGCCCATCAGAGGAAACCAAAGCAACTGCACCAACCCCACCAGTCAC 3914
Query 3993 TCCCCAGTCAAATGGCTCATCGGCATTCCCCTTTTCACTTCACTGGAACAACTATGCACC 4052
||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 3915 TCCTCAGTCAAATGGCTCA---GCATTCCCATTTTCACTTCACTGGAACAACTATGCACC 3971
Query 4053 AGAGATTGATTCTCCGACATCAGAAGATCAAGTTCTCGAATGTGCTCTTCTTTATCGAAA 4112
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3972 AGAGATCGATTCTCCTACATCAGAAGATCAAGTTCTAGAATGTGCTCTTCTTTATCGAAA 4031
Query 4113 CCGTAACCGTGACGAAAAACTCGTTCTTCTTAGCAACGATGTAACTCTCAAGATCAAAGC 4172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4032 CCGTAACCGTGACGAAAAACTCGTTCTTCTTAGCAACGATGTAACTCTCAAGATCAAAGC 4091
Query 4173 CATGGCAGAGGGTGTGATTTGCGAGACACCACATGAGTTCTATGAAAGTCTGGTTAATCC 4232
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 4092 CATGGCAGAGGGTGTGATTTGCGAGACACCACAAGAGTTCTATGAGAGTCTGGTTAATCC 4151
Query 4233 GTTCTCGGAGAGGTTTATGTGGACAGAGAGCACGGCAAGAGGACGAACTTGGAGTCATCT 4292
|||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 4152 GTTCTCCGAGAGGTTTATGTGGACAGAGAGCACAGCGAGAGGACGAACTTGGAGCCATTT 4211
Query 4293 GGACAATGACGTGTTGAGAGAAAGGTACAACGACCGAGCTTGTAG-AAGAAAGTCAACGT 4351
|| ||| |||||||||||||||||||||| ||||||||||||| || |||||| ||||
Sbjct 4212 AGATGATGTCGTGTTGAGAGAAAGGTACAACAACCGAGCTTGTAGGAA-AAAGTCGACGT 4270
Query 4352 ACAAT--AG-A-G-G-AGAGAGTGGTGCAGCTGCAAAAGGCTTGAAACTCATATTGCTCC 4405
|||| || | | | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4271 TCAATGGAGGAAGAGGAGAGAGTGGTGCAGCTGCAAAAGGCTTGAAACTCATTTTGCTCC 4330
Query 4406 ATAACTCTCACTATGGCCACACTCATTGATGATGTATCATCATCATCTATCACCATGGCC 4465
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 4331 ATAACTCTCACTATGGCCACACTCATTGATGATGCATCATCATCATCTATCACTATAGCC 4390
Query 4466 ATGTTTAATGATGATGCATCATCTATCATGTTCCTTCTTTCCAAGTAAGCCAAAT-AAAT 4524
|| || ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 4391 ATATTCAATGATGATGCATCATCCATCATGTTCCTTCTTTTCAAGTAAGCCAAATCAAAT 4450
Query 4525 TCTACTCGCTTACACATGGTTACAGGGAATAATGTTTTTAGAATGAATGACATTTCCATA 4584
| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 4451 -CAACTAGCTTACACATGGTAACATGGAATAATGTTTTTAGAATGAATGACATTTTCATA 4509
Query 4585 AT 4586
||
Sbjct 4510 AT 4511
Score = 1168 bits (632), Expect = 0.0
Identities = 775/844 (92%), Gaps = 10/844 (1%)
Strand=Plus/Plus
Query 2704 AAACCCAAAACAGAATTGTTAATTGGTTCTGGGAGATCTGAAAAATATTACAGCCTAAGC 2763
|||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2662 AAACTCAATGCAGAATTGTTAATTGGCTCTGGGAGATCTGAAAAATATTACAGCCTAAGC 2721
Query 2764 GAAATAGAGGGTGAAGAAAATACTGACATTGGAAGACTCTCTAGGTGTCCGATTCCTTCG 2823
||||||||| | | |||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 2722 GAAATAGAGAGCGGAGAAAATACTGACATTGGAAGACTGTCTAGGTGTCTAACTCCTTCG 2781
Query 2824 GCCTTGGCTGCAAAAACATCTGAGGATACAAAATTGATTGAAGAACTGTCTTCTTCTGAT 2883
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 2782 GCCTTGGCTGCAGAAACATTTGAGGATACAAAACCGATTGAAGAACTGTCTTCTGATGAT 2841
Query 2884 TCTGGAAGTCAAGAAAACCAGACCCCGGAAACACATGCTGTTAGAGATGATGTATTGTGT 2943
|||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| |
Sbjct 2842 ACTGGAAGTCAAGAAAACCAGACCCCGCAAACACGTGCTGTTAGAAATGATGTACTGTCT 2901
Query 2944 GATATGGATAGCTCAAGTACATGCAACATTTGGTCTAGGAGGGGGAAAGCTGCTTCTGTT 3003
|| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2902 GAGATGGATAGCTCAAGTACATGCAACATTTGGTCTAGGAGGGGAAAATCTGCTTCTGTT 2961
Query 3004 CTTAAGATACGGACCAACAAGAGTCAAGGAAAGCAAAAACAAACTGGGAGA-CAACCAAA 3062
||| ||||||||||||||||||||||||||||||||||||||| | ||| | |||||||
Sbjct 2962 CTTCAGATACGGACCAACAAGAGTCAAGGAAAGCAAAAACAAA-TTGGAAATCAACCAAG 3020
Query 3063 AGACAAGTTGCATAGAAAACAGGCTCTAAGTGACA---A-GTCTA--TTTCTCTGACTAT 3116
||||||||||||||||||||||||| ||||||||| | | | | ||||||| |
Sbjct 3021 AGACAAGTTGCATAGAAAACAGGCTTTAAGTGACACTTATGACAAGGAGAATCTGACTGT 3080
Query 3117 TCATCATGGTGCAGAGATTCTGGAACCAGAGATCTTTACTCCTGACAAGGAGAACCTCAC 3176
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 3081 TCATCATGGTGCAGAGAAACTGGAACCAGAGATCTTTACTCCTGACAAGGAGAATCTCAC 3140
Query 3177 CCCAAGTTCTCATATGTTGAAAAGATTACAAGATATTGGTGACGTGAAAGATAGCAAGAG 3236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3141 CCCAAGTTCTCATATGTTGAAAAGATTACAAGATATTGGTGACGTGAAAGATAGCAAGAG 3200
Query 3237 CTCTTTAAAGCTTTCAGGAAAATCATGCTCGTCA-TTGGTTCATTCCAGTATTGCTGTTC 3295
||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||
Sbjct 3201 CTCTTCAAAGCTTTCTGGAAAATCATGCTCGTCACTTG-TTCATTCCAGTATTGCTATTC 3259
Query 3296 TTGCTTCAGAGGCATTCACAGAACCAGAAATCTTTACCCCAGATAAGGAGAATCTTACCC 3355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3260 TTGCTTCAGAGGCATTCACAGAACCAGAAATCTTTACCCCAGATAAGGAGAATCTTACCC 3319
Query 3356 CAAGCTCTCACATGCTAAAACGTTTGCGAGAATTTGGTGATATTAAGGATACAAAAGGCT 3415
||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3320 CAAACTCTCATATGCTGAAACGTTTGCGAGAATTTGGTGATATTAAGGATAGAAAAGGCT 3379
Query 3416 CCTCCTCTAAAGCAACACGTAAACCATTCTTTGATATTCGTATGGAAGAAAACGTGATGG 3475
|||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 3380 CCTCATCTAAAGCAACACGTAAACCATTCTTTGATATTCATTTGGAAGAAAATGTGATGG 3439
Query 3476 TGGAACAGGAACCAGAAGATCTACACAGCCTGGGCAGCAAATCTAAGCTGAAGCATGAGC 3535
||||||| |||||||||||||||||||| || |||||||||| ||| |||||||||| |
Sbjct 3440 CGGAACAGAAACCAGAAGATCTACACAGCATGAGCAGCAAATCAAAGGTGAAGCATGAAC 3499
Query 3536 CTCT 3539
||||
Sbjct 3500 CTCT 3503
Score = 1024 bits (554), Expect = 0.0
Identities = 749/840 (89%), Gaps = 25/840 (3%)
Strand=Plus/Plus
Query 1815 AAGGCAAGTTATTGAAGTATCTGCTGAACCAGTCGCTAAAGCTGATATTCAGAGTCACGA 1874
|||| |||| || | |||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 1741 AAGG-AAGTAATGGGAGTATCTGCTGAACCACTAGCTAAAGCTGATATTCTGAGTCACGA 1799
Query 1875 AGAGAATGGAGAAACTGAGGGCTCAAGGCAAGTTATTGAAGTATCTCCCAAGTCCTTCTC 1934
||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 1800 AGAAAATGGAGAAACTGAGGGCTCAAGGCAAGTTATTGAAGTATCCCCCAATTCATTTTC 1859
Query 1935 TGAAGCTGAGCCAACTATAGAAATTTTAACTGGAGAAGCACAAGGCATCATAGGTTCTGA 1994
| |||||||||||||| |||||| |||||||||| |||| |||||| | ||||||||||
Sbjct 1860 TCAAGCTGAGCCAACTTTAGAAACTTTAACTGGAAAAGCCCAAGGCCGCGTAGGTTCTGA 1919
Query 1995 ATTCCCT-AGTGAACTTGCAGTAGAGACTGAAAGTGAGAACCTACTACATCAAAAGAGCA 2053
||| ||| |||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1920 ATT-CCTGAGTGGAGTTGCAGTAGAGACTGAAAGTGAGAACCTACTACTTCAAAAGAGCA 1978
Query 2054 TTGGAGAAACAAAGAATGAAATTCGGAGTCACGAAGACTATGGAGAAACTGAAGACTATG 2113
|||||||||||||| |||||||||||||||| | || | ||| | ||
Sbjct 1979 TTGGAGAAACAAAGGCTGAAATTCGGAGTCAC----A--AT---G--ACT----A-TA-- 2020
Query 2114 GAGAAACTGAGTGCTCATGGCCAGATATTGCAGTATCTCCCAGTTCCGTCTCCCCACCTG 2173
|||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 2021 AAGAAACTGAGTGCTCATGTCCAGTTATTGCAGTATCTCCCAGTTCCGTCTCTGAACCTG 2080
Query 2174 AGCCAACTTTGGAAATTTTAACTGATGAAGCTCGAGGTCTCCTAGGTTCTGAATTCCTAA 2233
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2081 AGCCAACTTTGGAAGTTTTAACTGATGAAGCTCGATGCCTCCTAGGTTCTGAATTCCTAA 2140
Query 2234 GTGAAGTGACAGTAGAGACTGAAATTGAGAACCTACTACATCAAAAAAGCAATGTAGAAA 2293
||||| || ||||||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct 2141 GTGAAATGGCAGTAGAGACTGAAATTGACAACCTACTACATCATAAAAGCAATGGAGAAA 2200
Query 2294 CAAAGGCTGATATTCTGATTCATGAAGACTATGGAGAAACTGAGGTCTCAAGGCAAATTA 2353
||||||||||||||| || ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 2201 CAAAGGCTGATATTCAGAGTCACGAAGACTATGGAGAAACTGATATCTCAAGGCAAGTTA 2260
Query 2354 TTACAGTATCTCCCAATTCTTTCTCTAAAGCTGAGCCAACTTTAGAAACTGAGGATTCAA 2413
|| |||||||||||||||| |||||| |||||||| ||||||||||||||| || |||||
Sbjct 2261 TTGCAGTATCTCCCAATTCCTTCTCTCAAGCTGAGACAACTTTAGAAACTGTGGTTTCAA 2320
Query 2414 GGCAGCAAGCCCGAGGCCTCGTAGGTTCTGATTCTGAATTCCAGAGTGAAGTTGCCAT-G 2472
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2321 GGCAGGAAGCCCGAGGTCTCGTAGGTTCTGATTCTGAATTCCAGAGTGAAGTTGCCATAG 2380
Query 2473 AAGACCGAATGTGAGAACTTACTAAATCAAAAACGCAATGGAGAAACCAAGGTCAGTTCA 2532
| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2381 A-GACGGAATGTGAGAACTTACTAAATCAAAAAAACAATGGAGAAACCAAGGTCAGTTCA 2439
Query 2533 AGGCAAGCC-AGTCCAGTATCTGATTGTTTGTCCACTCCAAAAGATCGTCTTTCAAGTAT 2591
||||| | | ||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2440 AGGCA-GTCTAGTGCAGTATCTGATTGTTTGTTCACTGGAAAAGATCGTCTTTCAAGTAT 2498
Query 2592 CAATACAGATGATATTCAAAGTCTCTGCTCGAGTTCGCAGCCACCTTCCGAGAGTGAAGT 2651
||||||||| ||||| |||||||| |||||||||| |||||||| ||| |||||||||||
Sbjct 2499 CAATACAGAAGATATCCAAAGTCTATGCTCGAGTTGGCAGCCACTTTCTGAGAGTGAAGT 2558
Score = 475 bits (257), Expect = 1e-132
Identities = 399/466 (86%), Gaps = 15/466 (3%)
Strand=Plus/Plus
Query 522 TGAAGCAGAAAATCTAGAGGTAGCACAACATCAGTCACTAGAGAATACTACATCAGGTGA 581
||||||||||||||||||||| | | |||||||||||||| ||||||| ||| ||||||
Sbjct 990 TGAAGCAGAAAATCTAGAGGTTG--C-ACATCAGTCACTAGCGAATACTGCATTAGGTGA 1046
Query 582 TGAGGGAGTTCTGCATCTAGATGTCACGTCAGAAGGAACTGGATCATCAGTTCC-TAGTG 640
||| |||| ||| ||||| ||||| |||||||||||| |||||||||||| ||| |||||
Sbjct 1047 TGATGGAGATCTACATCTGGATGTGACGTCAGAAGGACCTGGATCATCAG-TCCTTAGTG 1105
Query 641 AGGATGAGGATACGTATGTTACGACAAGGGAGATGTCTATGCCAGTTGCGTCTCCAAGTG 700
| |||||||||| ||| |||||||||||||||| || | ||| |||| ||||||| ||
Sbjct 1106 AAGATGAGGATATATATATTACGACAAGGGAGATTTCGGTTCCACTTGCATCTCCAAATG 1165
Query 701 TTTTGACGCTAGTTAGAGATTCTGTCGAGACACAAAAGCTACAATTCAATGAAGATTTGC 760
||||||| || |||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1166 TTTTGACACTGGTTAGAAATTCTGTCAAGATGCAAAAGCTACAATTCAATGAAGATTTGC 1225
Query 761 AGACTTCACCAAAGTGGGACTTGGATGTTATAGAATCTGTAGCAGAGAAGCTAAGTGGCA 820
|| | ||| ||| ||||||||| |||||| ||||| ||| ||||||||||| |||| |||
Sbjct 1226 AGCCATCAACAATGTGGGACTTAGATGTTGTAGAAGCTGCAGCAGAGAAGCCAAGTAGCA 1285
Query 821 GCTTTGTCCGTAG-TACGCAGCAGAGTGGTGGCGACGTGGAGGGATTAGGTTGTTCTGAA 879
||| ||||| ||| || |||||||||||||||| ||||||| |||||||||| |||||||
Sbjct 1286 GCTGTGTCC-TAGGTAAGCAGCAGAGTGGTGGCTACGTGGAAGGATTAGGTTATTCTGAA 1344
Query 880 CTTTTTG-ATGCTGCAGAGGCGGATGAATGTGAT----G--TCAGAGGAGATGGAGGCTT 932
| ||||| | ||||||||||| |||||||||||| | |||||||||||||||| ||
Sbjct 1345 CGTTTTGTA-GCTGCAGAGGCTGATGAATGTGATTTCAGAGTCAGAGGAGATGGAGGTTT 1403
Query 933 GCATCTGAATGTGATATCAGAAAAGATGGAGTCATCAGTGCCTAAT 978
|||||||||||||| ||||| | ||| || ||||||||| |||||
Sbjct 1404 TCATCTGAATGTGATGTCAGAGAGGATAGAATCATCAGTGTCTAAT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 173846993464
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5