BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34370.2
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473593 jgi|Araly1|473593|fgenesh2_kg.1__3547__AT1G34370.2 2418 0.0
> Ahg473593 jgi|Araly1|473593|fgenesh2_kg.1__3547__AT1G34370.2
Length=1684
Score = 2418 bits (1309), Expect = 0.0
Identities = 1554/1669 (93%), Gaps = 30/1669 (2%)
Strand=Plus/Plus
Query 44 ctctctctatcatcatcatcatcactttctctatctatctctcttc--tTAAAGCGGCCA 101
|||||||| || | |||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1 CTCTCTCTCTC-T-ATCATCATCACTTTCTCTATCTTTCTCTCTTCTTTTTAAGCGGCCA 58
Query 102 TTGGTGCTCTCCAAGTTCCATCTCAAGCTTTTCTTCTTGTGGGTTTTGTTGTTCTCTTAA 161
|||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 59 TTGGACCTCTCCAAGTTCCATCTCAAGCTTTTCTTCTGGTGTGTTTTGTTGTTTTCTTAA 118
Query 162 TTGAAAAACAAGATCTTGAACTAAAAAATGGAAACTGAAGACGATTTGTGCAACACCAAT 221
||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 119 TTGAAAATCAAGATCTTGAAAAAAAAAATGGAAACTGAAGATGATTTGTGCAACAACAAT 178
Query 222 TGGGGAAGCTCTTCTTCGAAA-TCGCGAGAGCCGGGTTCATCAGACTGTGGGAATTC-GA 279
||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||||| || |
Sbjct 179 TGGGGAAGCTCTTCTTC-AAAGTCGCGTGAGCCGGGTTTATCAGACGGTGGGAA-TCAAA 236
Query 280 CATTCGCAGGTTTTACGTCCCAGCAGAAGTGGGAAGATGCTTCAATCTTGGATTATGAGA 339
| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTTTACAGGTTTTACGTCGCAGCAGAAGTGGGAAGATGCTTCAATCTTGGATTATGAGA 296
Query 340 TGGGTGTGGAGCC---TG-G--A---TT-G-C--AA-GAGAGCATT-----CAAGCAAAT 380
||||||||||||| || | | || | | || || ||| || ||||| |||
Sbjct 297 TGGGTGTGGAGCCTAGTGTGCAAGTTTTCGACGAAATGAAAGC-TTCGGGGCAAGCTAAT 355
Query 381 GTTGATTTCTTACAAGGTGTTAGGGCTCAAGCGTGGGATCCAAGGACGATGTTGAGTAAC 440
||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 GTTGATTTCCTGCAAGGCGTTAGGGCGCAAGCGTGGGATCCAAGGACGATGTTGAGTAAT 415
Query 441 CTTTCTTTTATGGAGCAGAAGATTCACCAGCTGCAGGATCTTGTTCATCTTCTTGTTGGT 500
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 416 CTTTCCTTTATGGAGCAGAAGATTCACCAGTTGCAGGATCTTGTTCATCTGCTTGTTGGT 475
Query 501 CGTGGTGGGCAGCTTCAAGGTCGTCAAGACGAGCTCGCGGCTCAGCAGCAGCAGCTTATA 560
|| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 476 CGAGGTGGGCAGCTTCAAGGTCGTCTAGACGAGCTTGCGGCGCAGCAGCAGCAGCTTATA 535
Query 561 ACGACGGATCTTACTTCCATTATCATACAGCTTATTTCAACTGCAGGTAGTCTTCTTCCA 620
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACGACGGATCTTACTTCTATAATCATACAGCTTATTTCAACTGCAGGTAGTCTTCTTCCA 595
Query 621 TCTGTTAAGCATAATATGTCAACAGCTCCGGGTCCATTCACTGGGCAGCCCGGTTCAGCC 680
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 596 TCTGTTAAGCATAATATGTCAACAGCGCCGGGTCCATACACTGGGCAGCCCGGTTCAGCA 655
Query 681 GTGTTCCCTTATGTAAGGGAGGCTAATAACGTTGCTTCACAGAGTCAGAACAATAACAAC 740
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 656 GTGTTCCCTTATGCAAGGGAGGCTAATAACGTTGCTTCACAGAGCCAAAACAATAACAAC 715
Query 741 TGTGGTGCTCGAGAGTTCGATTTGCCTAAGCCGGTTCTTGTTGATGAGAGGGAAGGTCAT 800
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 716 TGTGGTGCTCAAGAGTTCGATTTGCCTAAGCCGGTTGTTGTTGATGAGAGGGAAAGCCAT 775
Query 801 GTTGTGGAGGAACATGAGATGAAAGATGAAGATGATGTGGAAGAAGGAGAGAACCTTCCT 860
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 776 GTTGTGGAGGAACATGAGATGAAAGACGAAGATGATGTGGAGGAAGGAGAGAACCTTCCT 835
Query 861 CCCGGTTCGTATGAGATATTGCAGCTTGAGAAAGAAGAGATTCTCGCACCGCATACTCAC 920
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 CCGGGTTCGTACGAGATATTGCAGCTTGAGAAAGAGGAGATTCTCGCACCGCATACTCAC 895
Query 921 TTCTGCACGATATGTGGCAAGGGTTTCAAGAGAGACGCGAATTTGAGGATGCATATGAGA 980
||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 896 TTCTGCACGATATGTGGTAAGGGTTTTAAGAGAGACGCGAATCTGAGGATGCACATGAGA 955
Query 981 GGGCATGGAGATGAGTACAAAACAGCAGCTGCTCTGGCGAAACCGAACAAAGAATCCGTA 1040
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 956 GGGCATGGAGATGAGTACAAAACAGCAGCTGCTCTGGCAAAACCAAACAAAGAATCCGTA 1015
Query 1041 CCCGGGTCTGAGCCGATGCTGATCAAGAGGTACTCGTGCCCATTCCTTGGTTGCAAACGT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CCCGGGTCTGAGCCGATGCTGATCAAGAGGTACTCGTGCCCATTCCTTGGTTGCAAACGT 1075
Query 1101 AACAAGGAGCACAAAAAGTTCCAGCCTTTGAAAACGATTCTATGCGTGAAGAATCACTAT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AACAAGGAGCACAAAAAGTTCCAGCCTTTGAAAACGATTCTATGCGTGAAGAATCACTAT 1135
Query 1161 AAACGCACCCACTGCGATAAAAGCTTCACTTGCAGCCGGTGCCATACCAAGAAATTCTCT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 AAACGCACCCACTGCGATAAAAGCTTCACTTGCAGCCGGTGCCATACCAAGAAGTTCTCT 1195
Query 1221 GTCATTGCAGATCTTAAAACCCACGAGAAGCACTGCGGGAAAAACAAGTGGCTTTGTTCC 1280
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1196 GTCATTGCAGATCTGAAAACCCACGAGAAGCACTGCGGGAAAAACAAATGGCTCTGTTCT 1255
Query 1281 TGTGGTACAACATTTTCAAGGAAAGACAAGTTGTTTGGTCACATAGCTCTGTTCCAGGGA 1340
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 TGCGGTACAACATTTTCAAGGAAAGACAAGTTGTTTGGTCACATTGCTCTGTTCCAGGGA 1315
Query 1341 CACACGCCTGCAATCCCTCTTGAAGAGACAAAACCATCAGCCAGTACATCTACTCAGAGA 1400
||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1316 CACACGCCTGCGATCCCTCTTGAAGAGACAAAACCTTCGGCCAGTACATCCACTCAGAGA 1375
Query 1401 GGGAGCTCTGAAGGCGGGAACAACAACCAAGGAATGGTTGGCTTCAATCTTGGTTCTGCA 1460
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1376 GGGAGCTCTGAAGGCGGGAACAACAACCAAGGAATGGTTGGCTTCAATCTCGGCTCTGCA 1435
Query 1461 TCAAATGCTAACCAAGAAACCACACAGCCTGGAATGACTG-ATGGGAGGATATGTTTTGA 1519
|| ||||||||||||||||| ||||||||||||||| || |||||| |||| |||||||
Sbjct 1436 TCTGATGCTAACCAAGAAACCGCACAGCCTGGAATGA-TGGATGGGAAGATAAGTTTTGA 1494
Query 1520 GGAGTCGTTCTCACCAATGAACTTTGATACATGTAATTTTGGAGGGTTCCACGAGTTTCC 1579
|||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1495 GGAGCCGTTCTCGCCGATGAACTTTGATACATGTAACTTTGGAGGGTTCCACGAGTTTCC 1554
Query 1580 GCGACTGATGTTTGATGATTCAGAGAGTTCTTTTCAAATGCTTATTGCGAATGCCTGTGG 1639
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1555 ACGACTGATGTTTGATGATTCAGAGAGTTCATTTCAAATGCTTATTGCGAATGCATGTGG 1614
Query 1640 TTTCTCGCCCAGGAATGTTGGTGAGTCTGTTTCAGATACTAGTCTCTAA 1688
||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1615 TTTCTCGCCTAGGAATGTTGGTGAGTCTGTTTCAGATACTAGTCTTTAA 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5