BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34380.2
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473594 jgi|Araly1|473594|fgenesh2_kg.1__3548__AT1G34380.2 1504 0.0
> Ahg473594 jgi|Araly1|473594|fgenesh2_kg.1__3548__AT1G34380.2
Length=1084
Score = 1504 bits (814), Expect = 0.0
Identities = 1026/1122 (91%), Gaps = 40/1122 (4%)
Strand=Plus/Plus
Query 46 AGAGGTTGACGACGATGATAACAGTAGGATTTATTCAACCCAATTCTCTCTTCTCCTTCT 105
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGAGGTTGAAGACGATGATAACAGTAGGATTTGCTCAACCCAATTCTCTCTTCTCCTTCT 60
Query 106 CAACTAAATCCATCGACAAGACACAACCTTCACGAACGAAATGGGTCTCTTCCTCGTCCT 165
|||||||||| ||||||||| ||||| |||||||||| ||||||||||| | |||
Sbjct 61 CAACTAAATCTATCGACAAGCCACAAACTTCACGAACCAAATGGGTCTC-T--TCG---- 113
Query 166 CTTCCTTTTCTTCTCACTCTTCCGTTGAGACATTTCATCGAACAGGTAATGTGCAAGTTC 225
|| || ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 114 --------TC--GTC-CTCTTCCGTTGAGACATTTCATCGAACAGGTTATGGGCAAGTTC 162
Query 226 TTCAGAAAGATGTTCTCTGTGGCAACAATGAAGAAATTAGGAAGAAGAATAAAAGGGTAT 285
|||||||||||||| || | | | | ||||||||||||||||||| |
Sbjct 163 TTCAGAAAGATGTTATC--T-G------T---G------GGAAGAAGAATAAAAGGGTTT 204
Query 286 TCTTCTTAGACGTTAGTCCACTTTGCTACGAAGGAAACAAACCCAGTTCGCAAGCTTTTG 345
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 205 TCTTCTTAGACGTTAGTCCACTTTGCTACGAAGGAAACAAACCCAGTTCACAAGCTTTTG 264
Query 346 GTCACTGGATTTCACTCTTCTTCTCTCAAGTCAGCCTCACTGATCCTGTCATAGCTGTTA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GTCACTGGATTTCACTCTTCTTCTCTCAAGTCAGCCTCACTGATCCTGTCATAGCTGTTA 324
Query 406 TCGATGGAGAAGAAGGTAACCA-ACGACGCAGAGAATTGTTGCCTTCATATAAAGCTCAT 464
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 325 TCGATGGAGAAGAAGGTAACCAGA-GACGCCGAGAATTGTTGCCTTCATATAAAGCTCAT 383
Query 465 AGGAAATCACCAAATCATGGGAGATACTCTAAGAGGCCACATCAGTTTGTTGATGAAGTT 524
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 384 AGGAAATCACCAAATCCTGGGAGATACTCTAAGAGGCCACATCAGTTCGTTGATGAAGTT 443
Query 525 CTTAGAAAATGCAATGTGCCAGTTGTTAGAATAGAAGGGCATGAAGCAGACGATGTAGTA 584
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 444 CTTAGGAAATGCAATGTGCCAGTTGTTAGATTAGAAGGGCATGAAGCAGACGATGTAGTG 503
Query 585 GCTACGCTAATGGAACAAGCTGTGCAAAGAGGATATCGTGCGGTTATTGCATCGCCTGAT 644
|| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GCGACGTTGATGGAACAAGCTGTGCAAAGAGGATATCGTGCGGTTATTGCATCGCCTGAC 563
Query 645 AAAGACTTTAAGCAGTTGATCTCAGAAAATGTTCAGATTGTCATTCCATTGGCAGATCTC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AAAGACTTTAAGCAGTTGATCTCAGAAAATGTTCAGATTGTCATTCCATTGGCAGATCTC 623
Query 705 AGAAGATGGTCCTTTTATACTTTGAAGCACTACCATGCTCAATATAATTGTGATCCACAG 764
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
Sbjct 624 AGAAGATGGTCCTTTTATACTTTGAAACACTACCATGCTCAGTATAACTGTGATCCACTG 683
Query 765 TCTGATTTGAGCTTTCGATGTATAATGGGTGATGAAGTTGATGGAGTTCCGGGGATTCAG 824
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 684 TCTGATTTGAGCTTTAGATGTATAATGGGTGATGAAGTTGATGGAGTTCCAGGCATTCAG 743
Query 825 CACATGGTCCCGGCGTTTGGAAGGAAAACAGCGATGAAACTTGTGAGAAAACATGGTTCT 884
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CACGTGGTCCCTGCGTTTGGAAGGAAAACAGCGATGAAACTTGTGAGAAAACATGGTTCT 803
Query 885 CTGGAGAGTTTACTAAGCGCAGCAGCTGTAAGAACCGTGGGGAGACCATATGCTCAAGAG 944
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CTGGAAAGTTTACTAAGCGCAGCAGCTGTAAGAACCGTGGGGAGACCATATGCTCAAGAG 863
Query 945 GCCCTTACGAAATACGCAGACTACTTGAGAAGAAACTATCAAGTTCTTGCCTTGAATAGA 1004
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 864 GCTCTTACGAAATACGCAGATTACTTGAGAAGAAACTATCAAGTTCTTGCATTAAAAAGA 923
Query 1005 GATGTGAGGGTACAGATTCAAAATGAATGGCTGATGGAGAGAGATACAAGCAATGATTCA 1064
|| || |||||| |||||||| | ||||||||| ||||||||||| ||||||||||| ||
Sbjct 924 GACGTAAGGGTAGAGATTCAAGAGGAATGGCTGGTGGAGAGAGATCCAAGCAATGATGCA 983
Query 1065 GAAGTATTGTCAAGCTTCTTCTCAACATTGCATGGATGATACTGACAAGCTAAAGCACAC 1124
|||||||||||||||||||||||||| |||||||||| ||||| | ||||| ||||||||
Sbjct 984 GAAGTATTGTCAAGCTTCTTCTCAACCTTGCATGGATAATACTAAGAAGCTCAAGCACAC 1043
Query 1125 TC-TCGCATTTTAGCTGATAGCTAGTTTTTGTGAGCTTGAAA 1165
| || ||| |||||||||||| ||||||||| | |||||||
Sbjct 1044 -CATCCCATCTTAGCTGATAGCAAGTTTTTGTAACCTTGAAA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5