BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34420.1
Length=2901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336505 jgi|Araly1|336505|fgenesh1_pg.C_scaffold_1003070 4161 0.0
> Ahg336505 jgi|Araly1|336505|fgenesh1_pg.C_scaffold_1003070
Length=2880
Score = 4161 bits (2253), Expect = 0.0
Identities = 2691/2900 (93%), Gaps = 40/2900 (1%)
Strand=Plus/Plus
Query 22 ATGAAGAAGATACATGTTCCTCCAGAAACAGGCAAGTTCATGTTCTGTCTCTTCTTCAGC 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGAAGAAGATACATGTTCCTCCAGAAACAGGCAAGTTCATGTTCTGTCTCTTCTTCACC 60
Query 82 TTCTTATCTTGTTGCCATGTATGTTTCTCTGAGTTGTCGTTGAACCAGACAAACACAATG 141
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTCTTCTCTTGTTGCCATGTATGTTTCTCTGAGTTGTCTTTGAACCAGACAAACACAATG 120
Query 142 ATCGAACTCTCTAGTTTCCTTAATATCTCGGATTGGAATCTTCCTGGTTCTGAGAGGAAT 201
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGAACTCTCTAGGTTCCTTAATATCTCGGATTGGAATCTTCCTGGTTCTGAGAGGAAT 180
Query 202 CCATGTTCATGGAACGGTGTTCTCTGCAGCTTACCAGACAATAGCTCTGTGATTAGCCTG 261
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 181 CCATGTTCATGGAACGGTGTTCTTTGCAGCCGACCAGACAATAGCTCTGTGATTAGCCTG 240
Query 262 TCTCTCTCTAACTTTGATCTCTCCAATTCTTCCTTCTTACCACTTGTCTGCAATCTCCAG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCTCTCTAACTTTGATCTCTCCAATTCTTCCTTCTTACCACTTGTCTGCAATCTCCAG 300
Query 322 ACTTTGGAGTCTCTTGATGTCTCCAACAACAGATTGAGCTCAATCCCAGAAGGGTTCGTT 381
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 ACTTTGGAGTCTCTCGATGTCTCCAACAACAGATTAAGCTCAATCCCAGATGGGTTCGTG 360
Query 382 ACAAATTGCGAAAGACTCATT-GCTCTGAAGCATCTGAACTTCAGCACGAACAAGTTTTC 440
|| ||||| |||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 361 ACGAATTGTGAAAAACTCATTGGGT-TGAAGCATCTGAACTTCAGCACGAACAAGTTTTC 419
Query 441 TACTTCCCCTGGTTTCCGCGGTTTCTCCAAATTGGCGGTTCTTGATTTCTCTCACAACGT 500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTTCCCCTGGTTTCCGCGGTTTCTCCAAATTGGCGGTTCTTGATTTCTCTCACAACGT 479
Query 501 GTTGAGTGGGAACGTTGGAGACTATGGTTTTGATGGGTTGGTTCAGTTGAGGAGTTTGAA 560
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTGAGTGGGAACATTGGAGACTATGGTTTTGATGGGTTGGTTCAGTTGAGGAGTTTGAA 539
Query 561 TCTTAGCTTCAACAGATTAACTGGTTCTGTTCCGGTTCATTTGACCAAAAGTCTAGAGAA 620
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 540 TCTTAGCTTCAACAGTTTAACTGGTTCTGTTCCAGTTCATTTGACCAAAGGTCTGGAGAA 599
Query 621 GCTTGAGGTTTCAGATAATAGTTTGAGCGGTACTATTCCCGAAGGCATCAAAGATTATCA 680
||| ||||||||||||||| |||||||||||||||||||||| || ||| | ||||| ||
Sbjct 600 GCTCGAGGTTTCAGATAATCGTTTGAGCGGTACTATTCCCGAGGGGATCGACGATTACCA 659
Query 681 AGAACTAACGCTGATAGATCTCAGTGATAATCAGCTTAACGGCTCTATCCCGAGTTCGTT 740
|||||||| | |||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 660 AGAACTAAAGTTGATAGATCTCAGTGATAATCAGCTTAATGGGTCAATCCCGAGTTCGTT 719
Query 741 GGGAAACCTCTCCAAGTTAGAAAGTTTACTTCTCTCCAACAACTATCTTAGTGGACTAAT 800
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 720 GGGAAATCTCTCCAAGTTAGAAAGTTTACTTCTTTCCAACAACTATCTTAGTGGGCTAAT 779
Query 801 CCCAGAATCACTTTCAAGCATCCAGACATTGCGTCGGTTTGCAGCGAACCGTAACCGATT 860
|||||||||||||||||||||||| || || ||||| ||||||||||||||||||| |||
Sbjct 780 CCCAGAATCACTTTCAAGCATCCAAACCTTACGTCGATTTGCAGCGAACCGTAACCAATT 839
Query 861 CACGGG-AGAAATTCCATCAGGGCTCACAAAACACCTCGAGAACTTAGATCTCAGTTTCA 919
|||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 840 CACGGGAAG-AATTCCATCAGGGATCACAAAACACCTTGAGAACTTAGATCTCAGTTTCA 898
Query 920 AC-AGTTTAGCGGGGTCGATTCCAGGTGACCTTTTGTCGCAGCTTAAACTCGTCTCTGTG 978
|| || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 ACAAG-TTAGCGGAGTCGATTCCAGATGACCTTTTGTCGCAGCTTAAACTCGTCTCTGTG 957
Query 979 GATCTGTCATCTAATCAACTTGTTGGATGGATACCACAAAGCATTTCGTCTAGCCTGGTT 1038
||| |||| | |||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 958 GATTTGTCGTTTAATCATCTTGTTGGATGGATACCGCAAAGCATTTCCCCTAGCCTGGTT 1017
Query 1039 AGGCTAAGACTAGGAAGCAATAAGCTAACAGGGTCA-GTACCCTCTGTTGCGTTTGAATC 1097
||||| |||||||||||||||||||| |||||| | || |||||| ||||||||||||
Sbjct 1018 AGGCTGAGACTAGGAAGCAATAAGCTGACAGGG-AAGGTGCCCTCTACTGCGTTTGAATC 1076
Query 1098 GCTGCAGCTCCTAA-CGTATCTGGAGATGGACAACAACAGTTTAACTGGCTTCATACCTC 1156
|||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 ACTGCAGAACCTAATC-TATCTGGAGATGGACAACAACAGTTTAACTGGCCACATACCTC 1135
Query 1157 CTTCATTTGGAAATCTTGTGAGCTTGAATCTCCTGAACTTGGCTATGAACGAGTTCACCG 1216
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CTTCATTTGGAAATCTTGTGATCTTGAATCTCCTGAACTTGGCTATGAACGAGTTCACCG 1195
Query 1217 GGATCTTACCTCCTGCATTTGGAAACCTTAGC-AGGCTTCAAGTGATAAAACTACAGCAA 1275
| | ||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 1196 GAAACTTACCTCCTGCATTTGGAAATCTTA-CAAGGCTTCAAGTGATAAAACTGCAGCAA 1254
Query 1276 AACAAGCTTACGGGAGAAATACCAGATACAATCGCATTTTTGAGTAACCTCTTGATTCTT 1335
||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1255 AACAAGCTTACTGGAGAAATCCCAGATACTATCACATTTTTGAGTAACCTCTTGATTCTT 1314
Query 1336 AACATCAGCTGCAATTCTCTAAGTGGATCCATACCGCCTTCGCTTTCTCAGCTAAAGAGG 1395
||||||||||| |||||||| |||||||||||||||||||||||||| | |||| ||||
Sbjct 1315 AACATCAGCTGGAATTCTCTGAGTGGATCCATACCGCCTTCGCTTTCAAACCTAACGAGG 1374
Query 1396 CTTTCCAACATGAACTTGCAAGGCAACAATCTGAATGGTACCATACCTGATAACATTCA- 1454
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1375 CTTTCCAGCATGAACTTGCAAGGCAACAATCTGAGTGGTACCATACCTGATAACATT-AG 1433
Query 1455 AAATCTGGAGGATTTGATAGAACTTCAGCTGGGACAAAACCAGCTACGAGGGAGGATCCC 1514
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1434 AAATCTGGAGGATTTGATAGAACTTCAGCTCGGACAAAACCAGCTACGAGGGAGGATCCC 1493
Query 1515 AGTAATGCCACGAAAGTTGCAAATTTCCTTAAATCTCAGCTACAACTTGTTTGAAGGATC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGTAATGCCACGAAAGTTGCAAATTTCCTTAAATCTCAGCTACAACTTGTTTGAAGGATC 1553
Query 1575 TATCCCTACTACATTGTCTGAACTTGACCGCTTGGAAGTTCTTGATCTGTCAAATAACAA 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TATCCCTACTACATTGTCTGAACTTGACCGCTTGGAAGTTCTTGATCTGTCAAATAACAA 1613
Query 1635 CTTCTCCGGCGAAATACCTAATTTCCTGAGCAGATTAATGTCCCTTACACAGCTCATACT 1694
|||||||||||||| ||| |||| ||||| || ||||||||||||||||||||||||||
Sbjct 1614 ATTCTCCGGCGAAATCCCTGATTTTCTGAGAAGTTTAATGTCCCTTACACAGCTCATACT 1673
Query 1695 CTCCAACAATCAGCTTACCGGAAATATTCCAAGGTTCACCCATAATGTTTCAGTCGATGT 1754
|||||||||||||||||||||||||||||||| ||||||| | ||||||| | || ||||
Sbjct 1674 CTCCAACAATCAGCTTACCGGAAATATTCCAAAGTTCACCAAGAATGTTTTACTCAATGT 1733
Query 1755 CAGAGGAAACCCTGGGGTTAAGTTGAA-AACTGAGAACGAAGT-CTCTATCCAGAGAAA- 1811
||| |||||||||||| | ||| |||| || |||| | || | ||| |||| || |||
Sbjct 1734 CAGCGGAAACCCTGGGATCAAGCTGAATAA-TGAGGAT-AACTTCTCAATCCCGA-AAAC 1790
Query 1812 -TCCATCAGGGAAAAGCAAACTAGTTAT-GATTGTAATATTTGTCTCCCTTGGAGTTCTT 1869
|| ||| ||||| || ||||||||| | | || |||| |||||| || ||||||| |
Sbjct 1791 GTC-ATCTGGGAAGAGTAAACTAGTTTTCG-TTATAATCTTTGTCGCCAGTGGAGTT-TG 1847
Query 1870 -GCTCTGCTTA-CAGGGATCATAACTGTCACCGTGCTGAAATTTTCAAGGCGCTGCAAGG 1927
||| | | | | |||||||||||||||| |||||||||| |||| ||||||| |||||
Sbjct 1848 CGCTAT-CATGGCCGGGATCATAACTGTCATCGTGCTGAAACTTTCTAGGCGCTTCAAGG 1906
Query 1928 GGATTAACAACAT-GCAGGTCGACCCAGATGAAGAAGGGTCAACTGTTCT-CCCTGAGGT 1985
||||||||||||| | ||| ||||| | | |||||||| ||||||||||| ||| |||||
Sbjct 1907 GGATTAACAACATAG-AGGCCGACCAAAACGAAGAAGGCTCAACTGTTCTTCCC-GAGGT 1964
Query 1986 AATTCATGG-AAAGCTTCTCACTTCAAACGCTCTACATAGATCAAACATCAACTTCGCCA 2044
|||||||| ||| |||||||| ||||| |||||||| ||||||||||| |||||| |||
Sbjct 1965 CATTCATGGGAAA-CTTCTCACCTCAAATGCTCTACACAGATCAAACATTAACTTCACCA 2023
Query 2045 AAGCTGTGGAAGCTGTTGCGCATCCAGAACA-TGGTCTGCATCAGACAATGTTCTGGAGT 2103
||||||||||||||||||| ||||||||| | || |||| ||||||||||||||||||||
Sbjct 2024 AAGCTGTGGAAGCTGTTGCTCATCCAGAA-AGTGCTCTGTATCAGACAATGTTCTGGAGT 2082
Query 2104 TACTACAGAGTTGTCATGCCCTCTGGTTCGAGTTACTTCATCAAAAAACTTAACACAAGA 2163
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 TACTACAGAGTAGTAATGCCCTCTGGTTCGAGTTACTTCATCAAAAAACTTAACACAAGA 2142
Query 2164 GACAGGGTTTTCCAGCAAGCGAGTAGTGAGCAACTAGAGGTAGAGCTAGAGATGTTGGGC 2223
|||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 2143 GACAGGATTTTCCAACAAGCCAGTAGTGAGCAACTAGAGCTAGAGCTAGAGATGTTGGGC 2202
Query 2224 AAGCTACATCACACAAACGTAATGGTTCCACTAGCTTATGTCCTCTATTCAGAAGGATGC 2283
||||| |||||| | ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2203 AAGCTGCATCACGCGAACATAATGGTTCCACTAGCTTATGTGCTCTATTCAGAAGGATGC 2262
Query 2284 TTACTCATCTATGACTTTTCTCACACATGTACACTTTACGA-GATTCTACACAACCATAG 2342
|| ||| ||||||||||| ||||||| ||||| |||||||| | |||||||||||||||
Sbjct 2263 TTGCTCGTCTATGACTTTGCTCACACGTGTACCCTTTACGATG-TTCTACACAACCATAC 2321
Query 2343 CAGTGGTGTGGTTGATTGGACAAGCAGGTATAGTATTGCGGTTGGCATAGCTCAGGGAAT 2402
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2322 CAGTGATGTGGTTGATTGGACAAGCAGGTATAGTATTGCGGTTGGTATAGCTCAGGGAAT 2381
Query 2403 CTCTTACTTGCATGGATCCGA-ATCCAGCGGTCGTGATCCAATCCTTCTACCAGATCTGT 2461
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
Sbjct 2382 CTCTTACTTGCATGGATCT-ATATCCAACGGTCGTGATCCAATCCTTCTACCAGATCTCT 2440
Query 2462 CTAGTaaaaaaaTACTACTCAAGTCGCTCACTGAGCCTCTAGTAGGGGACATTGAACTGT 2521
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2441 CTAGTAAAAAAATAATACTCAAGTCGCTCACTGAGCCCCTGGTAGGGGACATTGAACTGT 2500
Query 2522 TCAAGGTAATCGATCCTTCCAAAAGCAACAGCAGCCTCTCAGCAGTTGCAGGCACCATCG 2581
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 2501 TCAAGGTAATCGATCCTTCCAGAAGCAACAGCAGCCTCTCCGCTGTTGCAGGCACCATCG 2560
Query 2582 GCTACATTCCACCAGAGTATGCTTACACGATGAGGGTGACAATGGCTGGGAACGTCTACA 2641
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2561 GCTACATTCCACCAGAGTATGCTTACACAATGAGGGTGACAATGGCTGGGAATGTCTACA 2620
Query 2642 GCTTTGGGGTGATTCTTTTAGAGTTGTTAACTGGAAGGCCAGCTGTAAGTGAAGGAAGAG 2701
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2621 GCTTTGGGGTGATTCTTTTGGAGTTGTTAACTGGAAGGCCAGCTGTAAGTGAAGGAAGAG 2680
Query 2702 ATTTGGCTAAGTGGGTGCAGAGCCATTCGAGCCATCAAGAGCAGCAGAACAACATTCTTG 2761
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2681 ATTTGGCTAAGTGGGTGCAGAGCCATTCCAGCCATCAAGAGCAGCAGAACAACATTCTTG 2740
Query 2762 ATCTCAGAGTGAGCAAAACATCAACTGTAGCAACAAAGCAGATGCTCCGTGCCCTCGGTG 2821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2741 ATCTCAGAGTGAGCAAAACATCAACTGTAGCAACAAAGCAGATGCTCCGTGCCCTCAGTA 2800
Query 2822 TTGCTCTTGCCTGCATAAACATCTCTCCTGGGGCAAGACCAAAGATGAAGACTGTTCTAC 2881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 TTGCTCTTGCCTGCATAAACATCTCTCCTGGGGCAAGACCAAAGATGAAGACTGTTCTAC 2860
Query 2882 GGATGCTCACAAGACTCTAA 2901
|||||||||||||||| |||
Sbjct 2861 GGATGCTCACAAGACTTTAA 2880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109509454375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5