BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34470.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1 2499 0.0
Ahg327146 jgi|Araly1|327146|fgenesh1_pm.C_scaffold_6002366 1002 0.0
Ahg497264 jgi|Araly1|497264|fgenesh2_kg.106__2__AT1G71900.1 584 6e-166
Ahg316160 jgi|Araly1|316160|fgenesh1_pm.C_scaffold_2001193 479 3e-134
> Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1
Length=1643
Score = 2499 bits (1353), Expect = 0.0
Identities = 1559/1655 (94%), Gaps = 28/1655 (2%)
Strand=Plus/Plus
Query 15 TTACCTTTTTCGTAAATTTAGATGCTTCTTCATCACTACAATTTCTCTCCTGTCACTCTC 74
|||||||| |||||| |||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 1 TTACCTTTCTCGTAATTTTAGATGCTTCTTCATCACTAGAATTTCTCTCCTTTCA--CTC 58
Query 75 TTCTTCTACGCTCTTGTCTTTATATCCGATCTACCTCGTTCCCTCTCAAATCCCTAAATC 134
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 59 TTCTTCTACGCTCTTGTCTTTATATCCGATCTACCTCGTTTCCTTTCAAATCCCTAAATC 118
Query 135 GTCTCCTATATCCTTTCGCAAATGGACAAACCCAAGATCTGAAAAAGTTTTTGTCTTTTC 194
|||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||
Sbjct 119 GTCTCCTATATCCTCTCACAAATGGACAAACCCAAGATCTG-AAAAGCTTATGTCTTTTC 177
Query 195 TC-TCCCAATCGCCTGATTCAAGCCTAAAGCTCGGtttttttCTTCTGGGTATTTAGGGG 253
|| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTTCCC-ATCGCCTGATTCGAGCCTAAAGCTCGGTTTTTTTCTTCTGGGTATTTAGGGT 236
Query 254 TTAAGTGTATTGTAGAAAAGCATGGCGAGTTTGAGTGGGAGTTGGAGAGATGCGTATAAA 313
|| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 TTTAGGGTATTGTAG--AAGCATGGCGAGTTTGGGTGGGAGTTGGAGAGATGCGTATAAA 294
Query 314 GGAATGTCATCGGATAATATAAAGGGTTTAGTATTGGCTTTATCTTCAAGCTTATTCATT 373
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 295 GGAATGTCGTCGGATAATATAAAGGGTTTAGTTTTGGCTTTATCTTCGAGCTTATTCATT 354
Query 374 GGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTCAAGAGAGCTGGTGCTTCTGGTCTCAGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTCAAGAGAGCTGGTGCTTCTGGTCTCAGA 414
Query 434 GCAGGTTCTGGAGGTTATTCTTACCTGCTTGAGCCTCTCTGGTGGGTAGGCATGATAACG 493
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GCTGGTTCTGGAGGTTATTCTTACCTGCTTGAGCCTCTCTGGTGGGTAGGCATGATAACG 474
Query 494 ATGATTGTAGGGGAAATTGCCAATTTTGCTGCTTATGCCTTTGCGCCTGCCATTTTAGTA 553
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 ATGATTGTTGGGGAAATTGCCAATTTTGCCGCTTATGCCTTTGCGCCTGCCATTTTAGTA 534
Query 554 ACTCCTCTTGGTGCTCTCAGCATAATTATCAGTGCTGCTCTTGCTCATGTCATCCTACAC 613
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 ACTCCTCTCGGTGCTCTCAGCATAATTATCAGCGCTGCTCTTGCTCATGTCATCCTACAC 594
Query 614 GAAAAGTTGCATACTTTCGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACT 673
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAAAAGTTGCATACTTTTGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACT 654
Query 674 ATTGTCTTACATGCTCCTCAAGAACAAGAGATTGATTCTGTGTTACAAGTATGGAATCTT 733
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ATCGTCTTGCATGCTCCTCAAGAACAAGAGATTGATTCTGTGTTACAAGTATGGAATCTT 714
Query 734 GCGACAGAACCTGCTTTTCTTCTCTACGCTGCAGCAGTAGTAGGAGCAGCCATTATACTC 793
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCAACAGAACCTGCTTTTCTTCTCTACGCTGCAGCAGTAGTAGGAGCAGCCATTATACTC 774
Query 794 ATAGTTCAGTTTGTACCACAGTACGGTCAGTCACATGTCATGGTATATATCGGGGTTTGT 853
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 775 ATAGTTCAGTTTGTACCACAGTACGGACAGTCACATGTCATGGTCTATATCGGGGTTTGT 834
Query 854 TCTCTTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TCTCTTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTT 894
Query 914 ACGTTTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCACGCTGATAGTT 973
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 895 ACGTTTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCTCGCTGATAGTT 954
Query 974 CTCACCTGCGTGATAACCCAAATGAACTATCTAAACAAGGCGCTTGACACTTTCAACACG 1033
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 955 CTTACCTGCGTGATAACCCAAATGAACTATCTAAACAAGGCGCTTGACACGTTCAACACG 1014
Query 1034 GCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTC 1093
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1015 GCTGTAGTTTCACCCATATACTATGTTATGTTCACATCGTTGACCATCCTGGCTAGTGTC 1074
Query 1094 ATCATGTTTAAGGACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGGG 1153
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 ATCATGTTTAAGGACTGGGATCGACAGGACGGAACTCAGATTGTGACGGAGTTGTGTGGG 1134
Query 1154 TTTGTGACAATCCTTTCAGGAACCTTTTTGCTTCACAAAACAAAGGATATGGTTGATGGT 1213
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1135 TTTGTGACAATCCTTTCAGGAACCTTTCTGCTTCACAAAACAAAGGACATGGTTGATGGT 1194
Query 1214 TCTTCGTCCTTGGGAAATTTGGCTCTTCGCCTTCCTAAACAATTGGAAGATAGTAATGGG 1273
|||||||||| ||||||||||| | | || || |||||||| ||||||||||||||||||
Sbjct 1195 TCTTCGTCCTCGGGAAATTTGGTTATCCGTCTGCCTAAACATTTGGAAGATAGTAATGGG 1254
Query 1274 TTTGAGCAAGAAGGGATCCCACTCACTCTCAGACGCCACGAGTGTACCAAGTCGCCAAGG 1333
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1255 TTTGAGCAAGAAGGGATCCCACTGACTCTCAGACGCCAGGAGTGTACCAAGTCGCCAAGG 1314
Query 1334 CCAATGCGTCAATTCATTCTACCGCAAGACGGTCCTGAAGCTGTGTAAGGAGATACAAAG 1393
||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1315 CCAATGCGTCACCTCATGCTACCGCAAGACGGTCTTGAAGCTGTGTAAGGAGATACAAAG 1374
Query 1394 TAGATTCAATATATGTAAACCACGCGGCTTCAGAGACAGCATGAAGAAA--A-A-GA--- 1446
||||||||||||||||| |||||| |||| ||||||| || |||||||| | | ||
Sbjct 1375 TAGATTCAATATATGTATACCACGAGGCTGCAGAGACGGCGTGAAGAAAGGAGAAGAAAA 1434
Query 1447 -GA--AGA--TAGATTATTGGTACAAATTGCATAGGGAATTTTTCACATATTCATTTGTT 1501
|| ||| |||||||||| ||||| ||||||||||||||||||| | |||||||||||
Sbjct 1435 AGAGGAGAGATAGATTATTGTTACAAGTTGCATAGGGAATTTTTCATACATTCATTTGTT 1494
Query 1502 ATGCTTTCTCTAGAGA--TGTGAAAATGTGTCTGACAGATTGATTTAACTGTTATATAAA 1559
||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||
Sbjct 1495 TTGCTTTCTCTAGAGAGATGTGAAA-TGTGTC-GACAGATTGATG-AACTGTTATATAA- 1550
Query 1560 CACATATAAGTATAGTAA-TTGGTTTCCGTCGTCACGTTTTAGCAAAGCATGTTTCATTT 1618
|||||| | ||||||||| ||||| || |||||||| |||||||||| ||||||||||||
Sbjct 1551 CACATA-A-GTATAGTAAATTGGTATCGGTCGTCACATTTTAGCAAAACATGTTTCATTT 1608
Query 1619 ATCATAACATTAGTCTAAGAATCTTTGGTTAGCAT 1653
||||||||||| |||||||||||||||||| ||||
Sbjct 1609 ATCATAACATTGGTCTAAGAATCTTTGGTTGGCAT 1643
> Ahg327146 jgi|Araly1|327146|fgenesh1_pm.C_scaffold_6002366
Length=1146
Score = 1002 bits (542), Expect = 0.0
Identities = 892/1062 (84%), Gaps = 20/1062 (2%)
Strand=Plus/Plus
Query 287 AGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATATAAAGGGTTTAGTA 346
||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 13 AGTGGAAGTTGGAGAGATGCTTATAAAGGAATGTCGTCGGATAATGTAAAGGGTTTAGTG 72
Query 347 TTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTC 406
|||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 73 TTGGCTCTATCTTCAAGCTTATTCATTGGTGCTAGCTTCATTGTCAAGAAGAAAGGACTT 132
Query 407 AAGAGAGCTGGTGCTTCTGGTCTCAGAGCAGGTTCTGGAGGTTATTCTTACCTGCTTGAG 466
|||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 133 AAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGTTATTCTTACTTGCTTGAG 192
Query 467 CCTCTCTGGTGGGTAGGCATGATAACGATGATTGTAGGGGAAATTGCCAATTTTGCTGCT 526
||||| |||||| ||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 193 CCTCTTTGGTGGATAGGCATGATAACAATGATTGTGGGGGAAATTGCAAACTTTGCTGCG 252
Query 527 TATGCCTTTGCGCCTGCCATTTTAGTAACTCCTCTTGGTGCTCTCAGCATAATTATCAGT 586
||||| ||||| ||||||||| | || |||||||||||||| || ||||| |||||||||
Sbjct 253 TATGCGTTTGCACCTGCCATTCTCGTTACTCCTCTTGGTGCGCTTAGCATTATTATCAGT 312
Query 587 GCTGCTCTTGCTCATGTCATCCTACACGAAAAGTTGCATACTTTCGGGCTTCTTGGTTGT 646
||| ||||||| ||| ||||| |||| ||||||||||| ||||||||| | |||||||||
Sbjct 313 GCTTCTCTTGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGGGATCCTTGGTTGT 372
Query 647 GTCTT-ATGTGTTGTTGGTTCGATAACTATTGTCTTACATGCTCCTCAAGAACAAGAGAT 705
| ||| |||| | ||||||||| |||| || || ||||||||||| |||||||||| ||
Sbjct 373 G-CTTTATGTATCGTTGGTTCGGTAACAATCGTGTTACATGCTCCACAAGAACAAGTTAT 431
Query 706 TGATTCTGTGTTACAAGTATGGAATCTTGCGACAGAACCTGCTTTTCTTCT-CTACGCTG 764
|||||| || ||| |||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 432 TGATTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT-CTTCTACGCTG 490
Query 765 CAGCAGTAGTAGGAGCAGCCATTATACTCATAGTTCAGTTTGTACCACAGTACGGTCAGT 824
| || || ||||||||||| ||| |||| |||||||| ||| |||||| ||||| || |
Sbjct 491 CGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACTTTACGGGCAAT 550
Query 825 CACATGTCATGGTATATATCGGGGTTTGTTCTCTTGTTGGATCATTGTCGGTCATGAGCG 884
| |||||||||||||||||||| ||||| |||||| | |||||||| ||||| |||||||
Sbjct 551 CCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATCGGTTATGAGCG 610
Query 885 TCAAAGCGCTCGGGATAGCATT-AAAGCTTACGTTTTCAGGAATGAATCAGTTAATTTAC 943
|||| ||||| || ||||| || ||| || || ||||| |||| |||||| ||| |||
Sbjct 611 TCAAGGCGCTTGGAATAGCGTTGAAA-CTCACTTTTTCTGGAACGAATCAATTAGGATAC 669
Query 944 CCTCAGACATGGGTCTTCAC-GCTGATAGTTCTCACCTGCGTGATAACCCAAATGAACTA 1002
|| || |||||||||||||| | |||||||||| | ||||||||||| |||||||||||
Sbjct 670 CCGCAAACATGGGTCTTCACTG-TGATAGTTCTTATGTGCGTGATAACACAAATGAACTA 728
Query 1003 TCTAAACAAGGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTAT 1062
||||||||||||||| || || ||||||||||| || ||||| || ||||| || |||||
Sbjct 729 TCTAAACAAGGCGCTAGATACGTTCAACACGGCAGTGGTTTCCCCCATATATTACGTTAT 788
Query 1063 GTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGGACTGGGATCGACAGGA 1122
|||||| |||||||| ||| | ||||||||||||||||||||||| |||||||| ||| |
Sbjct 789 GTTCACGTCATTGACAATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGATCGGCAGAA 848
Query 1123 CGGAACTCAGATAGTGACGGAGTTGTGTGGGTTTGTGACAATCCTTTCAGGAACCTTT-T 1181
|||||| ||||| | || ||| |||||||||| || |||||||| || ||||| ||| |
Sbjct 849 CGGAACACAGATCTTTACAGAGCTGTGTGGGTTCGTCACAATCCTATCTGGAACTTTTCT 908
Query 1182 TGCTTCACAAAACAAAGGATATGGTTGAT-G-GT-TCTTC-GTCCTTGGGAA--ATTTGG 1235
| ||||||| ||||| ||| ||||||||| | | ||| | | || || ||
Sbjct 909 T-CTTCACACAACAACGGACATGGTTGATAGCGAGTCTAAAGGAAACGATAATCATCTG- 966
Query 1236 CT-CTTCGCCTTCCTAAACAATTG-GAAGATAGTAATGGGTTTGAGCAAGAAGGGATCCC 1293
|| || || |||| ||||| || ||||| ||||| ||||||| ||| || ||||||
Sbjct 967 CTTCTGCGAATTCCAAAACA-TTCAGAAGACAGTAACGGGTTTGCGCAGGACGGGATCAT 1025
Query 1294 ACTCACTCTCAGACGCCACGAGTGTACCAAGTCGCCAAGGCC 1335
|||| ||| |||||||| |||| | | ||||| ||| ||||
Sbjct 1026 TCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACGGCC 1067
> Ahg497264 jgi|Araly1|497264|fgenesh2_kg.106__2__AT1G71900.1
Length=1709
Score = 584 bits (316), Expect = 6e-166
Identities = 766/977 (78%), Gaps = 55/977 (6%)
Strand=Plus/Plus
Query 275 ATGGC-GAGTTTGAGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATAT 333
||||| || | || |||| || ||| ||||| | |||||||||||||| || ||||| ||
Sbjct 229 ATGGCGGAATCTG-GTGGAAGCTGGCGAGATTCTTATAAAGGAATGTCGTCTGATAACAT 287
Query 334 AAAGGGTTTAGTATTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAA 393
|||||||| || || || || ||||| || || ||||||||||||||||||||||||||
Sbjct 288 CAAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAA 347
Query 394 GAAGAAAGGTCTCAAGAGAGCTG-GTGCTTCTGGT-CTCAGAGCAGGT-TCTGGAGGTTA 450
||||||||| || |||| ||||| | || |||| || || |||||| | ||| || ||
Sbjct 348 GAAGAAAGGGCTTAAGAAAGCTGCGAGCA-CTGGCACT-AGGGCAGGTGT-TGGTGGGTA 404
Query 451 TTCTTACCTGCTT-GAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTG-TAGGGGAA 508
|||||| || || ||||| || |||||| | ||||||| || ||| || | || |||
Sbjct 405 TTCTTATCT-CTACGAGCCCCTTTGGTGGATCGGCATGACGACAATG-TTACTTGGTGAA 462
Query 509 ATTGCCAATTTTGCTGCTTATGCCTTTGCGCCTGCCATT-TTAGTAACTCCTCTTGGTGC 567
||||||||||| ||||||||||| |||||||| || || || || |||||||| |||||
Sbjct 463 ATTGCCAATTTCGCTGCTTATGCATTTGCGCCGGCTATACTT-GTCACTCCTCTAGGTGC 521
Query 568 TCTCAGCATAATTATCAGTGCTGCTCTT-GCTCATGTCATCCTACACGAAAAGTTGCATA 626
| |||| || ||||||||||||| |||| |||||| | || ||| ||||| | || |
Sbjct 522 TGTCAGTATCATTATCAGTGCTG-TCTTAGCTCATATTATATTACGGGAAAAACTACACA 580
Query 627 -CTTTCGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACTATTGTCTTACAT 685
|||| || ||||||| |||| |||||||||||| ||||| | ||||||||||||||||
Sbjct 581 TCTTT-GGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCTTACAT 639
Query 686 GCTCCTCAAGAACAAGAGATTGATTCTGTG-TTACAAGTATGGAATCTTGCGACAGAACC 744
|| |||||||||||||| |||||||||||| || |||| ||||||||||| ||||||||
Sbjct 640 GCCCCTCAAGAACAAGAAATTGATTCTGTGATTG-AAGTTTGGAATCTTGCAACAGAACC 698
Query 745 TGCTTTTCTTCT-CTACGCTGCAG-CAG-TAGTAGGAGCAGCC--ATTATACTCAT-AGT 798
|| || | | | ||| || | || | | || | || || || ||| | ||||| | |
Sbjct 699 AGCCTT-CATGTTCTATGC-G-AGTCTGGTAATTGGGGCTGCTGTATT-T-CTCATTA-T 752
Query 799 TCAGTTT-GTACCAC-AGTACGGTCAGTCACATGTCATGGTATATATCGGGGTTTGTTCT 856
| |||| | || | | || || || || | || ||||| ||||| || |||| ||
Sbjct 753 CC-GTTTTGCCCCCCTA-TATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCG 810
Query 857 CTTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTTACG 916
||||| |||||||| ||||||||||| || ||||| || || |||||||||||||| ||
Sbjct 811 CTTGTGGGATCATTATCGGTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACA 870
Query 917 TTTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCACGCT-GATAGTTCT 975
|||||||||| ||||||||| |||| ||||| |||||| | ||||| || | | || ||
Sbjct 871 TTTTCAGGAACAAATCAGTTATTTTATCCTCAAACATGGATATTCAC-CTTGGTCGTACT 929
Query 976 CACCTGCGTGATAACCCAAATGAACTATCT-AAACAAGGCGCTTGACACTTTCAACACGG 1034
||||| |||||||||||| ||||||| || ||||||||| ||||| || ||||| || |
Sbjct 930 TACCTGTGTGATAACCCAATTGAACTA-CTTAAACAAGGCTCTTGATACATTCAATACAG 988
Query 1035 CTGTAGTTTCACCTATATACTATGTTATGTTCACATCAT-TGACCATCCTAGCTAGTGTC 1093
|| |||| || |||||||||||||| ||||| ||||| | | || || | || ||||||
Sbjct 989 CTATAGTATCTCCTATATACTATGTGATGTTTACATC-TCT-ACTATTTTGGCCAGTGTC 1046
Query 1094 ATCATGTTTAAG--G-A-------CTGGGATCGACAGGACGGAACTCAGATAGTGACGGA 1143
|||||||||||| | | |||||||||||| |||| ||||| || || || ||
Sbjct 1047 ATCATGTTTAAGTTGTATGAGGGACTGGGATCGACAAAACGGTACTCAAATTGTTACAGA 1106
Query 1144 GTTGTGTGGGTTTGTGACAATCCTTTCAGGAACCTTT-TTGCTTCACAAAACAAAGGATA 1202
||||||| ||||| ||||| |||||||| || ||| || || |||| |||||||||||
Sbjct 1107 AATGTGTGGATTTGTTACAATACTTTCAGGCACTTTTCTT-CTCCACAGAACAAAGGATA 1165
Query 1203 TGGTTGATGGTTCTTCG 1219
|||| || ||||| |||
Sbjct 1166 TGGTCGAGGGTTCATCG 1182
> Ahg316160 jgi|Araly1|316160|fgenesh1_pm.C_scaffold_2001193
Length=1017
Score = 479 bits (259), Expect = 3e-134
Identities = 742/968 (77%), Gaps = 61/968 (6%)
Strand=Plus/Plus
Query 275 ATGGC-GAGTTTGAGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATAT 333
||||| || | || |||| || ||| ||||| | |||||||||||||| || ||||| ||
Sbjct 1 ATGGCGGAATCTG-GTGGAAGCTGGCGAGATTCTTATAAAGGAATGTCGTCTGATAACAT 59
Query 334 AAAGGGTTTAGTATTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAA 393
|||||||| || || || || ||||| || || ||||||||||||||||||||||||||
Sbjct 60 CAAGGGTTTGGTTTTAGCATTGTCTTCTAGTTTGTTCATTGGTGCTAGTTTCATTGTTAA 119
Query 394 GAAGAAAGGTCTCAAGAGAGCTG-GTGCTTCTGGT-CTCAGAGCAGGT-TCTGGAGGTTA 450
||||||||| || |||| ||||| | || |||| || || |||||| | ||| || ||
Sbjct 120 GAAGAAAGGGCTTAAGAAAGCTGCGAGCA-CTGGCACT-AGGGCAGGTGT-TGGTGGGTA 176
Query 451 TTCTTACCTGCTT-GAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTG-TAGGGGAA 508
|||||| || || ||||| || |||||| | ||||||| || ||| || | || |||
Sbjct 177 TTCTTATCT-CTACGAGCCCCTTTGGTGGATCGGCATGACGACAATG-TTACTTGGTGAA 234
Query 509 ATTGCCAATTTTGCTGCTTATGCCTTTGCGCCTGCCATT-TTAGTAACTCCTCTTGGTGC 567
||||||||||| ||||||||||| |||||||| || || || || |||||||| |||||
Sbjct 235 ATTGCCAATTTCGCTGCTTATGCATTTGCGCCGGCTATACTT-GTCACTCCTCTAGGTGC 293
Query 568 TCTCAGCATAATTATCAGTGCTGCTCTT-GCTCATGTCATCCTACACGAAAAGTTGCATA 626
| |||| || ||||||||||||| |||| |||||| | || ||| ||||| | || |
Sbjct 294 TGTCAGTATCATTATCAGTGCTG-TCTTAGCTCATATTATATTACGGGAAAAACTACACA 352
Query 627 -CTTTCGGGCTTCTTGGTTGTGTCTTATGTGTTGTTGGTTCGATAACTATTGTCTTACAT 685
|||| || ||||||| |||| |||||||||||| ||||| | ||||||||||||||||
Sbjct 353 TCTTT-GGAATTCTTGGCTGTGCCTTATGTGTTGTGGGTTCCACAACTATTGTCTTACAT 411
Query 686 GCTCCTCAAGAACAAGAGATTGATTCTGTG-TTACAAGTATGGAATCTTGCGACAGAACC 744
|| |||||||||||||| |||||||||||| || |||| ||||||||||| ||||||||
Sbjct 412 GCCCCTCAAGAACAAGAAATTGATTCTGTGATTG-AAGTTTGGAATCTTGCAACAGAACC 470
Query 745 TGCTTTTCTTCT-CTACGCTGCAG-CAG-TAGTAGGAGCAGCC--ATTATACTCAT-AGT 798
|| || | | | ||| || | || | | || | || || || ||| | ||||| | |
Sbjct 471 AGCCTT-CATGTTCTATGC-G-AGTCTGGTAATTGGGGCTGCTGTATT-T-CTCATTA-T 524
Query 799 TCAGTTT-GTACCAC-AGTACGGTCAGTCACATGTCATGGTATATATCGGGGTTTGTTCT 856
| |||| | || | | || || || || | || ||||| ||||| || |||| ||
Sbjct 525 CC-GTTTTGCCCCCCTA-TATGGGCAAACAAACGTAATGGTTTATATTGGTATTTGCTCG 582
Query 857 CTTGTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATTAAAGCTTACG 916
||||| |||||||| ||||||||||| || ||||| || || |||||||||||||| ||
Sbjct 583 CTTGTGGGATCATTATCGGTCATGAGTGTAAAAGCACTTGGAATAGCATTAAAGCTGACA 642
Query 917 TTTTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCACGCTGATAGTTCTC 976
||||| |||| ||||| |||| | || | ||||| || || | || ||
Sbjct 643 TTTTCTGGAACAAATCA---AATTCA---TC-G---TGGGTATTTTT--TGTT-GT-CTA 688
Query 977 ACCTGCGTGA-TAACCCAAATGAACTATC--TAAACAAGGCGCTTGACACTTTCAACACG 1033
|| | || | ||| || || | | || | | || ||| ||||| || ||||| ||
Sbjct 689 ACTTT-GTTACTAAAGGAATTGCATT-TCACTTA-CA-GGCTCTTGATACATTCAATACA 744
Query 1034 GCTGTAGTTTCACCTATATACTATGTTATGTTCACATCAT-TGACCATCCTAGCTAGTGT 1092
||| |||| || ||||||||||| || ||||| ||||| | | || || | || |||||
Sbjct 745 GCTATAGTATCTCCTATATACTACGTGATGTTTACATC-TCTAACTATTTTGGCCAGTGT 803
Query 1093 CATCATGTTTAAGGACTGGGATCGACAGGACGGAACTCAGATAGTGACGGAGTTGTGTGG 1152
||||||||||||||||||||||||||| |||| ||||| || || || || |||||||
Sbjct 804 CATCATGTTTAAGGACTGGGATCGACAAAACGGTACTCAAATTGTTACAGAAATGTGTGG 863
Query 1153 GTTTGTGACAATCCTTTCAGGAACCTTT-TTGCTTCACAAAACAAAGGATATGGTTGATG 1211
||||| ||||| |||||||| || ||| || || |||| ||||||||||||||| || |
Sbjct 864 ATTTGTTACAATACTTTCAGGCACTTTTCTT-CTCCACAGAACAAAGGATATGGTCGAGG 922
Query 1212 GTTCTTCG 1219
|||| |||
Sbjct 923 GTTCATCG 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5