BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34520.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1 1554 0.0
> Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1
Length=1000
Score = 1554 bits (841), Expect = 0.0
Identities = 947/1000 (95%), Gaps = 0/1000 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAACTCAAGAGCTTCGTCAAAGTATGGGGTTCTGCAATAATCTCTGTCTCT 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 ATGGAGGAAGAACTCAAGAGCTTCGTCAAAGTATGGGTTTCTGCAATAATCTCTGTGTCT 60
Query 61 TACTGTTACTATATACCATCGAAGATCAAAAGCGGTGTTCATCGATTACTCTCGgttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACTGTTACTATATACCATCGAAGATCAAAAGCGGTGTTCATCGATTACTCTCGGTTCTT 120
Query 121 cctgtctgtgttctgtttcttgttcttcctttgttcttcgtctttacgattttctcttcC 180
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CTTGTCTGTGTTCTGTTTCTTGTTCTTCCTTTGTGCTTCGTCTTTACGATTTTCTCTTCC 180
Query 181 ACCACTGCGTTTTGCCTCTCTATACTTGCTAATTTTAAGCTCATCTTATTTGCCTTCGAC 240
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 181 ACCACTGCGTTTTGCCTCTCTTTACTTGCTAATTTTAAGCTCATCCTATTTGCCTTTGAC 240
Query 241 AAAGGTCCTCTTTTACCACTTCCCGCTAATCTCTTCCGATTCATATGCTTTACTTGCTTG 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGTCCTCTTTTACCACTTCCCACTAATCTCTTCCGATTCATATGCTTTACTTGCTTG 300
Query 301 CCCATCAAGATTCaaaaaaaCCCTAACTCTCAAAATCATCTACCTAAATGGGTTTTCTTT 360
||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 CCCATCAAGCTTCAAAAGAACCCTAACTCTCAAAATCATCCACCTAAATGGGTTTTCTTT 360
Query 361 TGTAAAGCTGCAATTTTTGGGGTGTTGTTAAACGTCCATAACTATAAAAGTTCGTTGCCT 420
|||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 361 AGTAAAGCTGCAATTTTTGGGGTTTTGTTAAACGTTCATAACTATAAAAGTTTGTTGCCA 420
Query 421 CCAATTCTTCTAATATGTCTCTATCCATTGCATCTATACCTTGTGCTTGACGTTCTTTTA 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 CCAATTCTTCTAATATGTCTCTATCCAATGCATCTATACCTTGTGCTTGACGTTCTTTTA 480
Query 481 ACCATCGTCAACGCTTTGCTTACAATCATTCTTGGATGCGACCTGGAGCCACATTTCAAC 540
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 481 ACCATCGTCAACGCTTTGCTTACCATCATTCTCGGGTGCGACCTGGAGCCACATTTCAAC 540
Query 541 GAACCATACTTAGCCACGTCTCTTCAAGACTTTTGGGGTCGCCGTTGGAACCTTATGGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 541 GAACCATACTTAGCCACGTCTCTTCAAGACTTTTGGGGTCGCCGTTGGAACCTCATTGTT 600
Query 601 CCGGCCATTTTCCGGCCAGGCGTCTACCATCCCATGCGTTCGGTATGCCAACCCCAAATG 660
||||| ||||||||||||||||||||| || | || ||||||||||||||| |||||||
Sbjct 601 CCGGCTATTTTCCGGCCAGGCGTCTACTTTCTCGTGAGTTCGGTATGCCAACACCAAATG 660
Query 661 AGGTCTGATTGGGCAAGGTTCATGGGGTGTTGGACCACATTCTTCGTCTCTGGATTGATT 720
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct 661 AGGTCTGATTGGGCAAGGTTCATGGGGTGTTTGACAACATTCTTCGTTTCTGGTTTGATT 720
Query 721 CACGAGCTGGTATACTTCTACATAAACCGTGAGACGCCTACTTGGGAAGTTACTTGGTTC 780
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 CACGAGCTGGTATACTTTTACATAAACCGTGAGACCCCTACTTGGGAAGTTACTTGGTTC 780
Query 781 TTTGTATTACAGGGGGTTTGCACCGCGATGGAAAAAGCCGTGAAGAGGAAGACGCGATGG 840
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 TTTGTATTACATGGGGTTTGCACCGCGATGGAAAAAGCCGTGAAGAGGAAGATTCGATGG 840
Query 841 TCGTTGAGTCCGATGTTGTCACGGTTGATCACGGTGGGGTTTTTGGTTGTCACAGGTTAT 900
||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 841 TCGCTGAGTCCGATGTTGTCACGGTTGATCACAGTGGGTTTTTTGGTTGTCACAGGTGAT 900
Query 901 TTTCttttttttCGTCAGATTGAAAGGAGCAACATGTTGGAGAGACGCGCCACTGAAGCC 960
||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 901 TTTCTGTTTTTCCGTCAGATTGAAAGGAGCAACATGCTGGAGAGACGCGCCAATGAAGCT 960
Query 961 TCACTAATCATTGATTTCGTAAAACACAAGCTTTCCAATT 1000
|| ||| |||||||||||||||||| |||| ||| |||||
Sbjct 961 TCGCTATTCATTGATTTCGTAAAACGCAAGGTTTTCAATT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5