BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34540.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313950 jgi|Araly1|313950|fgenesh1_pm.C_scaffold_1002730 2322 0.0
Ahg324175 jgi|Araly1|324175|fgenesh1_pm.C_scaffold_5001719 2091 0.0
> Ahg313950 jgi|Araly1|313950|fgenesh1_pm.C_scaffold_1002730
Length=1497
Score = 2322 bits (1257), Expect = 0.0
Identities = 1422/1502 (95%), Gaps = 10/1502 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCTCTTAATATTCATCTTCCTCCTCTGTTTCCCTATCTCCATCTTCTTTATCTTC 60
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1 ATGGCGCTCTTAATCTTCATCTTCCTCCTCTGTTTCCCTATCTTCATCTTCTATATCTTC 60
Query 61 TTCACC-AAGAAATCTTCTTCAGAATTTGGTTTCAAGTCGTATCCAATCGTCGGAAGCTT 119
||| || ||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 61 TTC-CCGAAGAATTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTCGGGAGCTT 119
Query 120 TCCTGGTCTTGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTTTCTCG 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 TCCTGGTCTAGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTGTCTCG 179
Query 180 ATGTCCAACCCAAACGGCGATTTTCCGGCGACCAGGGAAGCAACAACTCATCATGACGGC 239
||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 180 ATGTCCAACTCAAACAGCGATTTTCCGGCTACCAGGGAAGAAACAACTCATCATGACGGC 239
Query 240 GAATCCATCTAACGTCGAGTATATGCTCAAGACCAAATTCGAGAGCTTCCCTAAAGGCCA 299
||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct 240 GAATCCATCCAACGTCGAGTATATGCTCAAGACGAAGTTCGAGAGTTTCCCTAAAGGCGA 299
Query 300 ACAGTTTACTTCGGTTCTTGAGGATTTTCTCGGCCACGGGATTTTTAATTCCGATGGTGA 359
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 ACAGTTTACCTCGGTTCTTGAGGATTTTCTCGGCCACGGGATTTTTAATTCCGACGGTGA 359
Query 360 TATGTGGTGGAAACAGAGGAAGACGGCGAGCTACGAATTTAGTACTAAATCTCTCCGTGA 419
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GATGTGGTGGAAACAGAGGAAGACGGCAAGCTACGAATTTAGTACTAAATCTCTCCGTGA 419
Query 420 CTTTGTTATGAGCAACGTCACCGTCGAAATCAACACCAGGCTTGTTCCGGTGTTAGTAGA 479
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 420 CTTTGTTATGAGCAACGTCACCGTCGAAATCAACACTAGGCTCGTTCCGGTGTTAGTAGA 479
Query 480 AGCTGCAACCACC-GGAAAGTTGATAGATCTCCAAGACATATTGGAGCGATTCGCGTTCG 538
||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 480 AGCTGCAACTACCGGGAAA-TTGATAGATCTTCAAGATATATTGGAGCGATTCGCGTTCG 538
Query 539 ATAACATCTGTAAATTAGCTTTCAATGTTGATTGCGCTTGTCTCGGCCACGACGGAGCGG 598
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
Sbjct 539 ATAACATCTGTAAATTAGCTTTCAATGTTGATCCCGCTTGTCTCGGCAAAGACGGAGCCG 598
Query 599 TCGGTGTAAACTTCATGCGGGCCTTCGAAACCGCTGCGACGATTATATCGCAGCGGTTTC 658
||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct 599 CCGGTGTAAACTTCATGCGGGCTTTCGAAACCGCGGCGACGATCATATCGCAACGGTTTC 658
Query 659 GGTCGGTGGCTTCGTGTGCATGGAGGATTAAAAAGAAACTTAACATTGGATCAGAGAGAG 718
|||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 GGTCTGTGGCTTCGTGTTCATGGAAGATTAAAAAGAAACTTAACATTGGATCAGAGAGAG 718
Query 719 TTCTGAGAGAATCAATCGCGACCGTCCATAAATTCGCAGACGAGATCGTGCGTAACAGGA 778
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 719 TCCTGAGAGAATCAATCGCGACAGTCCATAAATTCGCAGACGAGATCGTGCGTAAGAGGA 778
Query 779 TTGATCAAGGAAGATCAAGTGACCACAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGG 838
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 TTGATCAAGGAAAATCAAGTGACCAGAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAGG 838
Query 839 AGGAGATGAATTCGCCGGAGATACTCCGTGACATTGTCATAAGTTTCATCCTCGC-GGGA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 839 AGGAGATGAATTCGCCGGAGATACTCCGTGACATTGTCATAAGTTTCATCCTTGCCGGGA 898
Query 898 CGAGACACGACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAG 957
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 -GAGACACCACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAG 957
Query 958 GTGGAAGATAAGATTCTGCAAGAGCTAAACTCGATTCGCGCACGAACTGGGAAGCGAATC 1017
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 958 GTGGAAGATAAGATTCTACAAGAGCTAAACTCGATTCGAGCACGAACAGGGAAGCGAATC 1017
Query 1018 GGGGAAGTTTACGGGTTTGAACATCTTAAGA-TGATGAATTATCTTCACGCTGCTATAAC 1076
||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||
Sbjct 1018 GGGGAAGTTTACGGGTTTGAAGATCTTAA-ACTGATGAATTATCTTCACGCTGCGATAAC 1076
Query 1077 TGAATCTTTAAGATTGTATCCACCTGTGCCAGTGGACATAAAGAGTTGTGCTGAGGACAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGAATCTTTAAGATTGTATCCACCTGTGCCAGTGGACATAAAGAGTTGTGCTGAGGACAA 1136
Query 1137 TGTATTGCCTGATGGGACATTTGTAGGTAAAGGTTGGGCAATAACCTATAACATATTTGC 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 TGTGTTGCCTGATGGGACATTTGTAGGTAAAGGTTGGGCAATAACCTATAACACGTTTGC 1196
Query 1197 AATGGGAAGGATGGAGAGTATTTGGGGGAAAGATTGTGATCGTTTTGATCCTGAGAGGTG 1256
||||||||||||||||||| |||||| |||||||| ||||| |||||||| ||||||||
Sbjct 1197 CATGGGAAGGATGGAGAGTAGTTGGGGTAAAGATTGCGATCGGTTTGATCCCGAGAGGTG 1256
Query 1257 GATTGATGAAACAAATGGTTG-TTTTAGAGGTGAGGATCCTTCTAAGTTTCCTGCGTTTC 1315
|||| |||||||||||||| | ||||||||||||| |||||| |||||||||||||||||
Sbjct 1257 GATTAATGAAACAAATGGT-GCTTTTAGAGGTGAGAATCCTTATAAGTTTCCTGCGTTTC 1315
Query 1316 ATGCTGGACCAAGGATGTGTGTAGGGAAGGATATGGCTTATATTCAAATGAAATCGATAG 1375
|||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1316 ATGCGGGACCAAGGATTTGTGTAGGGAAGGAGATGGCTTATATTCAGATGAAATCGATAG 1375
Query 1376 TCGCTGCGGTTTTAGAGCGGTTTGTGGTTGAGGTTCCAGGGAAGGAGCGTCCTGAGATTC 1435
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1376 TCGCTGCGGTTTTAGAGCGGTTTGTGGTTGAGGTTCCGGGGAAGGAGCGTCCTGAGATTC 1435
Query 1436 TATTGTCGATGACACTTAGAATCAAAGGAGGTTTGTTTGCGAGGGTACAAGAGAGATCTT 1495
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1436 TATTGTCGATGACACTTAGAATCAGAGGAGGTTTGTTTGCGAGGGTACACGAGAGATCTT 1495
Query 1496 GA 1497
||
Sbjct 1496 GA 1497
> Ahg324175 jgi|Araly1|324175|fgenesh1_pm.C_scaffold_5001719
Length=1500
Score = 2091 bits (1132), Expect = 0.0
Identities = 1384/1506 (92%), Gaps = 15/1506 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCTCTTAATATTCATCTTCCTCCTCTGTTTCCCTATCTCCATCTTCTTTATCTTC 60
|||| ||| || || || ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1 ATGGAGCTTTTCATCTTTATCTTCCTCCTCTGTTTCCCTATCTTCATCTTCTTCATCTTC 60
Query 61 TTCACCAAGAAATCTTCTTCAGAATTTGGTTTCAAGTCGTATCCAATCGTCGGAAGCTTT 120
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTCCCCAAGAATTCTTCTTCAGAATTTGGTTTCAAGTCGTATCCGATCGTCGGAAG-TTT 119
Query 121 -CCTGGTCTTGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTTTCTCG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 ACCTGGTCTTGTGAATAACCGTCACCGATTCCTCGACTGGACGGTGGAGACTCTGTCTCG 179
Query 180 ATGTCCAACCCAAACGGCGATTTTCCGGCGACCAGGGAAGCAACAACTCATCATGACGGC 239
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 180 ATGTCCAACCCAAACGGCGATTTTCCGGCGACCAGGGAAGCAACAGTTCGTCATGACGGC 239
Query 240 GAATCCATCTAACGTCGAGTATATGCTCAAGACCAAATTCGAGAGCTTCCCTAAAGGCCA 299
||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
Sbjct 240 GAATCCAGCTAACGTCGAGTACATGCTCAAGACGAAATTCGAGAGTTTCCCTAAAGGCGA 299
Query 300 ACAGTTTACT-TCGGTTCTTGAGGATTTTCTCGGCCACGGGATTTTTAATTCCGATGGTG 358
| ||||| | ||| ||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 300 GCGGTTTA-TCTCGATTCTTGAGGATTTTCTCGGCCGCGGGATTTTTAACTCCGATGGTG 358
Query 359 ATATGTGGTGGAAACAGAGGAAGACGGCGAGCTACGAATTTAGTACTAAATCTCTCCGTG 418
| ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 359 AGATGTGGTGGAAACAGAGGAAGACTGCGAGTTATGAATTCAGTACTAAATCTCTCCGTG 418
Query 419 ACTTTGTTATGAGCAACGTCACCGTCGAAATCAACACCAGGCTTGTTCCGGTGTTAGTAG 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 419 ACTTTGTTATGAGCAACGTCACCGTCGAAATCAACACAAGGCTTGTTCCGGTGTTAGCAG 478
Query 479 AAGCTGCAACCACCGGAAAGTTGATAGATCTCCAAGACATATTGGAGCGATTCGCGTTCG 538
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 479 AAGCTGCAACCACCGGAAAATTGATAGATCTTCAAGACATATTGGAGCGATTCGCGTTTG 538
Query 539 ATAACATCTGTAAATTAGCTTTCAATGTTGATTGC-GCTTGTCTCGGCCACGACGGAGCG 597
|||||||||| |||||||| ||||| ||||||| | ||||||||||| ||||||||||
Sbjct 539 ATAACATCTGCAAATTAGCCTTCAACGTTGATT-CAGCTTGTCTCGGTGACGACGGAGCC 597
Query 598 GTCGGTGTAAACTTCATGCGGGCCTTCGAAACCGCTGCGACGATTATATCGCAGCGGTTT 657
| ||||||||||||||||| |||||| ||||| || |||||||| || ||||| ||||||
Sbjct 598 GCCGGTGTAAACTTCATGCAGGCCTTTGAAACGGCGGCGACGATCATCTCGCAACGGTTT 657
Query 658 CGGTCGGTGGCTTCGTGTGCATGGAGGATTAAAAAGAAACTTAACATTGGATCAGAGAGA 717
| ||| |||| ||||| | |||||| |||||||||||||||||||||||||||||||| |
Sbjct 658 CAGTCTGTGGTTTCGTATTCATGGAAGATTAAAAAGAAACTTAACATTGGATCAGAGAAA 717
Query 718 GTTCTGAGAGAATCAATCGCGACCGTCCATAAATTCGCAGACGAGATCGTGCGTAACAGG 777
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GTTCTGAGAGAATCAATCGTGACCGTTCATAAATTCGCAGACGAGATCGTGCGTAACAGG 777
Query 778 ATTGATCAAGGAAGATCAAGTGACCACAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAG 837
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 ATTGATCAAGGAAGATTATGTGACCAGAAGGAAGATTTGCTTTCTCGGTTTATCAGCAAG 837
Query 838 GAGGAGATGAATTCGCCGGAGATACTCCGTGACATTGTCATAAGTTTCATCCTCGCGGGA 897
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 838 GAGGAGATGAATTCGCCGGAGATACTTCGTGACATTGTCATAAGCTTCATTCTCGCGGGA 897
Query 898 CGAGACACGACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGAGACACGACTTCCTCTGCTTTGAGCTGGTTCTTTTGGTTACTCTCTATGCATCCAGAG 957
Query 958 GTGGAAGATAAGATTCTGCAAGAGCTAAACTCGATTCGCGCACGAACTGGGAAGCGAATC 1017
|||||| | |||||||| |||||| || |||||||||| |||||||| ||||||||||||
Sbjct 958 GTGGAAAACAAGATTCTACAAGAGTTAGACTCGATTCGAGCACGAACAGGGAAGCGAATC 1017
Query 1018 GGGGAAGTTTACGGGTTTGAACATCTTAAGA-TGATGAATTATCTTCACGCTGCTATAAC 1076
||||||||||||||||||||| ||||||| | ||||||||||||| || || || |||||
Sbjct 1018 GGGGAAGTTTACGGGTTTGAAGATCTTAA-ACTGATGAATTATCTGCATGCGGCGATAAC 1076
Query 1077 TGAATCTTTAAGATTGTATCCACCTGTGCCAGTGGACATAAAGAGTTGTGCTGAGGACAA 1136
||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1077 TGAATCTTTAAGATTGTATCCGCCTGTGCCAGTGGACACAATGAGTTGTGCTGAGGACAA 1136
Query 1137 TGTATTGCCTGATGGGACATTTGTAGGTAAAGGTTGGGCAATAACCTATAACATATTTGC 1196
||| ||||||||||||||||||||||| ||| ||||| |||| ||||||| | |||
Sbjct 1137 TGTGTTGCCTGATGGGACATTTGTAGGGAAATCTTGGGGGATAAGCTATAACGCGTATGC 1196
Query 1197 AATGGGAAGGATGGAGAGTATTTGGGGGAAAGATTGTGATCGTTTTGATCCTGAGAGGTG 1256
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1197 GATGGGAAGGATGGAGAGTATTTGGGGTAAAGATTGTGATCGGTTTGATCCCGAGAGGTG 1256
Query 1257 GATTGATGAAACAAATGGTTGTTTTAGAGGTGAGGATCCTT-CTAAGTTTCCTGCGTTTC 1315
|||| |||||||||||||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct 1257 GATTAATGAAACAAATGGTGGTTTTAGAGGTGAGAATCCTTAC-AAGTTTCCTGCGTTTC 1315
Query 1316 ATGCTGGACCAAGGATGTGTGTAGGGAAGGATATGGCTTATATTCAAATGAAATCGATAG 1375
| || ||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||
Sbjct 1316 ACGCAGGACCAAGGATGTGTTTAGGGAAGGAGATGGCTTATATTCAGATGAAATCAATAG 1375
Query 1376 TCGCTGCGGTTTTAGAGCGGTTTGTGGTTGAGGTTCCAGGGAAG--G-AGCGTCCTGAGA 1432
||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1376 TCGCTGCAGTTTTAGAGCGGTTTGTGGTTGAGGTTCCGGGGAAGAAGGAGCGTCCTGAGA 1435
Query 1433 TTCTATTGTC-GATGACACTTAGAATCAAAGGAGGTTTGTTTGCGAGGGTACAAGAGAGA 1491
|||||||||| | ||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1436 TTCTATTGTCAG-TGACACTTAGAATCAGAGGAGGTTTGTTGGTGAGGGTACAAGAGAGA 1494
Query 1492 TCTTGA 1497
||||||
Sbjct 1495 TCTTGA 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5