BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34560.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336605 jgi|Araly1|336605|fgenesh1_pg.C_scaffold_1003170 436 6e-122
Ahg922684 jgi|Araly1|922684|scaffold_103965.1 213 1e-54
Ahg922689 jgi|Araly1|922689|scaffold_103970.1 193 1e-48
> Ahg336605 jgi|Araly1|336605|fgenesh1_pg.C_scaffold_1003170
Length=753
Score = 436 bits (236), Expect = 6e-122
Identities = 322/363 (89%), Gaps = 7/363 (2%)
Strand=Plus/Plus
Query 184 TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTAT-AAGGATGGTGGCAAGTC 242
|||||||||| |||||||| ||||| ||||||||||||||| || ||||||||||| ||
Sbjct 331 TATGTGTTTGTGACATATATAAAACCAAAGAATGGAGTCTATCAA-GATGGTGGCAAATC 389
Query 243 GAGCCAATGGGAACAGTTCAAAACGTTTTCCTATCAATTTT-CTTTTGGAGTCAGAGTTT 301
|| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 390 GATTCAATGGGAACAGTTCAAAACGTCTTCCTATC-ATTTTGCTTTTGGAGTCAGAGTTT 448
Query 302 TGGCTCGCATTGTTTCAATTCTTGAAATCGGTGGCTTAGTGAAACCGTCTGGTTTTAAAC 361
|||||||||||||||| ||||| ||||| |||||| |||||||||||||||||||| |||
Sbjct 449 TGGCTCGCATTGTTTCGATTCTCGAAATGGGTGGCCTAGTGAAACCGTCTGGTTTTGAAC 508
Query 362 ACTACAACCAAGAGCTTAAGAAGCTAGAGGAGCATTTGA-GATCTGTCAAGGATGTATCG 420
|||||| ||||| ||||||| ||||||||| |||||| | |||||||||||||| ||
Sbjct 509 GCTACAAACAAGAAATTAAGAATCTAGAGGAGAATTTGAAG-TCTGTCAAGGATGTTTCA 567
Query 421 GAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTAGCATTTTTCACTTGTGGAAGTCT 480
| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 568 GCGGCGAATGGGTTTTCTAGAGAAGCTATAGAGTCTAACATTTTTCACTTGTGGAAGTCT 627
Query 481 CTGTTTGAAGCAACACCAGAAATGATACACCCTAGTAAGACTAAAGTTCTTGAGCTGTTT 540
|| |||||| ||||||| ||||||||| |||||| ||||| || |||| ||||| | |||
Sbjct 628 CTCTTTGAAACAACACCGGAAATGATAAACCCTACTAAGAGTATAGTTATTGAGAT-TTT 686
Query 541 TAG 543
|||
Sbjct 687 TAG 689
> Ahg922684 jgi|Araly1|922684|scaffold_103965.1
Length=808
Score = 213 bits (115), Expect = 1e-54
Identities = 243/304 (80%), Gaps = 12/304 (4%)
Strand=Plus/Plus
Query 176 ATGCATACTATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATAAGGATGGTG 235
|||| || |||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 363 ATGC-TA-TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGATG 420
Query 236 GCAAGTCGAGC-CAATGGGAACAGTTCAAAACGTTTTCCTATCAATTTT-CTTTTGGAGT 293
|||| || | | |||| ||| | | ||||| ||| | || | || |||| ||| |||||
Sbjct 421 GCAAATCAA-CTCAATTGGAGCTGATCAAATCGTCTACCGAGCA-TTTTGCTTACGGAGT 478
Query 294 CAG-AGTTTTGGCTCGCATTGTTTCAATTCTTGA-AATCGGTGGCTTAGTGAAACCGTCT 351
||| | ||| || |||||| ||| |||| | ||| |||||| || || || ||||
Sbjct 479 CAGGAATTT-GGAGCGCATTATTTTGGTTCTCAATAAT-GGTGGCCTAATGCCACAGTCT 536
Query 352 GGTTTTAAACACTACAACCAAGAGCTTAAGAAGCTAGAGGAGCATTTGAGATCTGTC-AA 410
| |||| |||||| |||| ||||||| ||||||||||||||| | || || ||| || ||
Sbjct 537 GATTTTGAACACTTCAACAAAGAGCTGAAGAAGCTAGAGGAGAAGTTCAGGTCT-TCCAA 595
Query 411 GGATGTATCGGAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTAGCATTTTTCACTT 470
||||| || ||||||||||| ||||||||||| || ||| |||||| |||| |||| ||
Sbjct 596 AGATGTTTCAGAGGCGAATGGATTTGCGAGAGATGCGATAAAGTCTAACATTCTTCATTT 655
Query 471 GTGG 474
||||
Sbjct 656 GTGG 659
> Ahg922689 jgi|Araly1|922689|scaffold_103970.1
Length=769
Score = 193 bits (104), Expect = 1e-48
Identities = 262/333 (79%), Gaps = 32/333 (10%)
Strand=Plus/Plus
Query 180 ATACTATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATAAGGATGGTGGCAA 239
||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 303 ATA-TATGTGTTTGAAACATATATCAAACCCAAGAATGGAGTCTATCAGGCTGGTGGCAA 361
Query 240 GTCGAGCCAATGGGAACAGT-TCA-AAACGTTTT-CCTATCAATTTTCTTTT-GGAGTCA 295
|||| |||||||||| | || |||| | | || | |||||| |||| ||| ||
Sbjct 362 ATCGAAACAATGGGAACT-TATCGTAAAC-TCTAGCC-AG-AATTTTGTTTTTGGAATCG 417
Query 296 GAGTTTTGGCTCGCATTGTTTCAATTCTT-G-AA-A--------TC----GGTG-GCTTA 339
||| |||| ||||||||||| |||||| | || | || |||| | |||
Sbjct 418 GAGAATTGGATCGCATTGTTTTGATTCTTAGGAAGAGAGAAAGCTCTTTTGGTGAG-TTA 476
Query 340 GTGAAACCGTCTGG-TTTTAAACACTACAACCAAGAGCTTAAGAAGCTAGAGGAG-CATT 397
|||||| | || || |||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct 477 GTGAAAACATC-GGATTTTGAACACTACAACCAAGAGCTGAAAAAGCTAGAGGAGACGTT 535
Query 398 TGAGATCTGTCAAGGATGTATCGGAGGCGAATGGGTTTGCGAGAGAAGCTATAGAGTCTA 457
||| |||| ||| |||| || |||||| |||| ||| |||||||||| ||| ||||||
Sbjct 536 -GAGGTCTGCCAAAAATGTTTCAGAGGCGTATGGATTTTCGAGAGAAGCGATAAAGTCTA 594
Query 458 GCATT-TTTCACTTGTGGAAGTCTCTGTTTGAA 489
|||| ||| | ||||||||| |||| ||||||
Sbjct 595 ACATTCTTT-ATTTGTGGAAGCCTCTCTTTGAA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5