BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34575.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922139 jgi|Araly1|922139|scaffold_103420.1 1583 0.0
Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1 1085 0.0
> Ahg922139 jgi|Araly1|922139|scaffold_103420.1
Length=1638
Score = 1583 bits (857), Expect = 0.0
Identities = 1355/1591 (85%), Gaps = 52/1591 (3%)
Strand=Plus/Plus
Query 12 AACAACTCAAACCCTAATCTTCA-CAGTTTTTCTCCTTC-TAATTCCAACATCATTCGCA 69
||||||||||||||||||| ||| || ||||||| | || ||| |||| ||||||||||
Sbjct 32 AACAACTCAAACCCTAATCATCACCA-TTTTTCTTC-TCGCAATCCCAAGATCATTCGCA 89
Query 70 GCACCACCAAAACTCAAAGACAG-TTTCACACAATG-TGTAACCG-TTTTCAAACC-T-- 123
|||||||| |||| ||||| | |||| ||||||| | || | | |||| ||||| |
Sbjct 90 TCACCACCATCACTCGAAGAC-GTTTTCGCACAATGCT-TAGCTGATTTT-AAACCTTCA 146
Query 124 --TCC---GT-CCCAATCCAAAACTTCA-CATACACGCAACAAAACCCTAACTTCCTCAC 176
||| | ||||||||||||||||| | ||||| ||||||| |||||| ||||||||
Sbjct 147 AATCCAAAATCCCCAATCCAAAACTTCATC-TACACTCAACAAAGCCCTAATTTCCTCAC 205
Query 177 CATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAACCGGT 236
|| || ||||| |||||||| ||||| |||||||||||| || ||||||||||| ||
Sbjct 206 AATCCTTAACAATTACGTCCGTAATCTTCGTTACTTCAACAACACGACACGTAAACCCGT 265
Query 237 AGCGATCGTAGCCGCGGCTCACT-TCACTCATATCCAAGCTACAATCAAC-TGCGCCAAA 294
||||| ||||| ||||| | | ||||||| ||||| ||||||||| || ||||||||
Sbjct 266 CGCGATTGTAGCTGCGGCGGA-TGTCACTCACATCCAGGCTACAATC-ACTTGCGCCAAG 323
Query 295 AAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCTTAT 354
|| || |||||||||||||| || || || ||||| ||||||||||| || ||||| |||
Sbjct 324 AATCTCGGCCTCCAGCTCCGGATACGCAGCGGAGGCCATGACTACGACGGTATGTCGTAT 383
Query 355 TTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTAC-GTGCAATTGAGATCGA 413
||||||||| |||||||||| ||||| |||||||| ||||| | || | || | || ||
Sbjct 384 TTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGT-CTATCAATATAGA 442
Query 414 TCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC-A 472
||| ||||| || ||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 443 TCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTACGG 502
Query 473 ACGTTGCCAATAAAAGCAACAACCTCCGTGG-TTTCCCCGCTGGAATCTGTCCC-GGTCT 530
| || ||||| |||||||| | || ||||| ||| || || |||||||| ||| ||| |
Sbjct 503 A-GTCGCCAACAAAAGCAATGATCTTCGTGGATTT-CCTGCCGGAATCTG-CCCTGGTTT 559
Query 531 CGGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTT 590
|| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 560 AGGCGCTGGTGGACATTTTAGCGGTGGCGGTTATGGAAACATGATGAGGAAATACGGTTT 619
Query 591 ATCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCG 650
|||||| ||||||||||||||||||||||| ||||| ||||| | |||||||||||||||
Sbjct 620 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTCTTGGACCG 679
Query 651 GAGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTG 710
||| || ||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 680 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCCGCTAGTTTCTG 739
Query 711 TGTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGA-GAAAGTTACAGTCTTTA 769
||||||||||||||||||||| ||||| ||||| || || || ||||| |||||||| |
Sbjct 740 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTGCC-GACTAAAGTCACAGTCTTCA 798
Query 770 ACGTTGAAACAATCGGAAACAGAGG-A--GT-AATCCCT-ACCGATCTTGCAGCGAAATG 824
|||||||||| | ||||||||||| | || || | | || || |||| | | |||||
Sbjct 799 ACGTTGAAACGGTTGGAAACAGAGGAAGTGTGAA--CATCACGGAACTTGTAACCAAATG 856
Query 825 GCAAGAGATCGCCGACAAGATCGATAACGATTTGTTCATAAGATTAACGTTGA-GCTCAA 883
|||||||||||| ||||||||||| |||||| |||||||||||||||| || | ||||||
Sbjct 857 GCAAGAGATCGCAGACAAGATCGACAACGATCTGTTCATAAGATTAAC-TTTAGGCTCAA 915
Query 884 GTAACAAGACGGTCAAGGCTTCTTTCATGGGAATGTACTTAGGAAACTCCGAGAAGCTTC 943
| ||||| || || |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 916 GCAACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAAGCTTC 975
Query 944 TAGAGATTATGAACGCCAAATTCCCGGAACTCGGTCTGAACAAAACAGAGTGCATAGAAA 1003
|||| || |||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct 976 TAGAAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGAACAAAACAGAGTGTATAGAAA 1035
Query 1004 TGAAATGGATCGAATCAGTTCTGTTCTGGCTTAGTATCCCACCGGGTACAGCACCAACAT 1063
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1036 TGAAATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCAGGTACAGCACCAACAA 1095
Query 1064 CG-GTCATGCTAAACCGAATCCCACAAAAGCAAATCTACCTTAAAAGAAAATCCGATTAC 1122
|| || ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1096 CGAGT-ATGCTAAACCGGATCCCGCAAAAGCAAATCTACCTCAAGAGAAAATCCGATTAC 1154
Query 1123 GTGCAGAAACCGATCTCAA-AACCCGGTCTAGAATCGATATTCAAGATTCTTTCAGAGAA 1181
|| || |||||||| |||| || ||||| |||| |||||||||||| | || |||||||
Sbjct 1155 GTCCAAAAACCGATTTCAAGAA-CCGGTTTAGAGTCGATATTCAAGGTCCTGACAGAGAA 1213
Query 1182 CGAGAACGTGTCGATGGCTTGGAACCCATACGGCGGGAGAATGAGCGAGATTCCGGCGAC 1241
|||||||||| | ||||||| ||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1214 CGAGAACGTGACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGCGAGATTCCATCGAC 1273
Query 1242 AGAGACGGCGTTT-CCTCACCGAGCAGGGAACATGTTTAAGATTCAGTACTCATCTAACT 1300
||||| || ||| || ||||||||||| |||||||| |||||||||||| || | ||||
Sbjct 1274 CGAGACCGC-TTTCCCGCACCGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACT 1332
Query 1301 GGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGCCAAACGGAAAGAGTGTTCG 1360
||||||||||||| |||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1333 GGTTCGTGCCAGGGGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACGGAAAGAGTGTTCG 1392
Query 1361 AGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCGTTTTTGAACTACAGAGATA 1420
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1393 AGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAAGCGTTTTTGAACTATAGAGACG 1452
Query 1421 TTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGTAAAGTGTATGGAGTTAAGT 1480
| |||||||| |||| |||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 1453 TCGACATTGGCAAGAGCTTGAATTCGACGTACGAGGAAGGTAAAGTGTACGGAGTTAAAT 1512
Query 1481 ATTTTAAGAATAACTTCGAGAGGTTGGTTCAGGTTAAGA-CTAGAGTTGATCCGGACAAC 1539
|||||||| |||||||||||| |||||| | | |||| | ||||||||||| ||||||
Sbjct 1513 ATTTTAAGGATAACTTCGAGAAATTGGTTAATATCAAGAGC-AGAGTTGATCCCGACAAC 1571
Query 1540 ATTTTCCGGTACGAGCAGAGCATTCCAGTGC 1570
||||||||||||||||||||||||||||||
Sbjct 1572 TTTTTCCGGTACGAGCAGAGCATTCCAGTGC 1602
> Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1
Length=1104
Score = 1085 bits (587), Expect = 0.0
Identities = 714/775 (92%), Gaps = 9/775 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCTTCAACAACTCAAACCCTAATCTTCACAGTTTTTCTCCTTCTAATTCCAACA 60
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 1 ATGAAATCTTCAACAACTCAAACCATAATCGTCACATTTTTTCTCCTTATAATTCCAACA 60
Query 61 TCATTCGCAGCACCACCAAAACTCAAAGACAGTTTCACACAATGTGTAACCGTTTTCAAA 120
|||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct 61 TCATTCGCAGCACCACCAAAACTCGAAGACAGTTTCACACAATGTCTCACCACTTTCAAA 120
Query 121 CCTT-----CC---G-TCCCAATCCAAAACTTCACATACACGCAACAAAACCCTAACTTC 171
|||| || | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAAGAAAACCCTAACTTC 180
Query 172 CTCACCATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAA 231
|||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||
Sbjct 181 CTCATCATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTACACGTAAA 240
Query 232 CCGGTAGCGATCGTAGCCGCGGCTCACTTCACTCATATCCAAGCTACAATCAACTGCGCC 291
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCGGTGGCGATCGTGGCTGCGGCTCACTTCACTCATATCCAAGCTACAATAAACTGCGCC 300
Query 292 AAAAAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCT 351
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGATGGAATGTCT 360
Query 352 TATTTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTACGTGCAATTGAGATC 411
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 361 TATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCAATCGAGATT 420
Query 412 GATCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC 471
||||| ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 421 GATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAGATCTACTAC 480
Query 472 AACGTTGCCAATAAAAGCAACAACCTCCGTGGTTTCCCCGCTGGAATCTGTCCCGGTCTC 531
||||||||||| ||||||||||||||||| || ||||| || |||||||| |||||||||
Sbjct 481 AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTGCCCCGGTCTC 540
Query 532 GGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 591
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 600
Query 592 TCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCGG 651
|| |||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 601 TCTATTGATAACAATATAGACGCTAAGACTGTTGATGCTAACGCAAGAGTATTGGACCGG 660
Query 652 AGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTGT 711
|| || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 661 AGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCGCTAGTTTCTGT 720
Query 712 GTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGAGAAAGTTACAGTCT 766
||||||||||| ||||||||||| || ||||| || |||||||||||||||||||
Sbjct 721 GTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTACAGTCT 775
Score = 300 bits (162), Expect = 2e-80
Identities = 176/183 (96%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1282 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906
Query 1342 CAAACGGAAAGAGTGTTCGAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 1401
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966
Query 1402 TTTTTGAACTACAGAGATATTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGT 1461
||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026
Query 1462 AAA 1464
|||
Sbjct 1027 AAA 1029
Score = 113 bits (61), Expect = 3e-24
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1503 GTTGGTTCAGGTTAAGACTAGAGTTGATCCGGACAACATTTTCCGGTACGAGCAGAGCAT 1562
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1031 GTTGGTTCAGGTTAAGACTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGAGCAT 1090
Query 1563 TCCAGTGCAC 1572
||||||||||
Sbjct 1091 TCCAGTGCAC 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5