BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34575.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg922139 jgi|Araly1|922139|scaffold_103420.1 1583 0.0 Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1 1085 0.0 > Ahg922139 jgi|Araly1|922139|scaffold_103420.1 Length=1638 Score = 1583 bits (857), Expect = 0.0 Identities = 1355/1591 (85%), Gaps = 52/1591 (3%) Strand=Plus/Plus Query 12 AACAACTCAAACCCTAATCTTCA-CAGTTTTTCTCCTTC-TAATTCCAACATCATTCGCA 69 ||||||||||||||||||| ||| || ||||||| | || ||| |||| |||||||||| Sbjct 32 AACAACTCAAACCCTAATCATCACCA-TTTTTCTTC-TCGCAATCCCAAGATCATTCGCA 89 Query 70 GCACCACCAAAACTCAAAGACAG-TTTCACACAATG-TGTAACCG-TTTTCAAACC-T-- 123 |||||||| |||| ||||| | |||| ||||||| | || | | |||| ||||| | Sbjct 90 TCACCACCATCACTCGAAGAC-GTTTTCGCACAATGCT-TAGCTGATTTT-AAACCTTCA 146 Query 124 --TCC---GT-CCCAATCCAAAACTTCA-CATACACGCAACAAAACCCTAACTTCCTCAC 176 ||| | ||||||||||||||||| | ||||| ||||||| |||||| |||||||| Sbjct 147 AATCCAAAATCCCCAATCCAAAACTTCATC-TACACTCAACAAAGCCCTAATTTCCTCAC 205 Query 177 CATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAACCGGT 236 || || ||||| |||||||| ||||| |||||||||||| || ||||||||||| || Sbjct 206 AATCCTTAACAATTACGTCCGTAATCTTCGTTACTTCAACAACACGACACGTAAACCCGT 265 Query 237 AGCGATCGTAGCCGCGGCTCACT-TCACTCATATCCAAGCTACAATCAAC-TGCGCCAAA 294 ||||| ||||| ||||| | | ||||||| ||||| ||||||||| || |||||||| Sbjct 266 CGCGATTGTAGCTGCGGCGGA-TGTCACTCACATCCAGGCTACAATC-ACTTGCGCCAAG 323 Query 295 AAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCTTAT 354 || || |||||||||||||| || || || ||||| ||||||||||| || ||||| ||| Sbjct 324 AATCTCGGCCTCCAGCTCCGGATACGCAGCGGAGGCCATGACTACGACGGTATGTCGTAT 383 Query 355 TTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTAC-GTGCAATTGAGATCGA 413 ||||||||| |||||||||| ||||| |||||||| ||||| | || | || | || || Sbjct 384 TTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGT-CTATCAATATAGA 442 Query 414 TCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC-A 472 ||| ||||| || ||||||||||| ||||||||||| || || ||||||||||||||| Sbjct 443 TCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTACGG 502 Query 473 ACGTTGCCAATAAAAGCAACAACCTCCGTGG-TTTCCCCGCTGGAATCTGTCCC-GGTCT 530 | || ||||| |||||||| | || ||||| ||| || || |||||||| ||| ||| | Sbjct 503 A-GTCGCCAACAAAAGCAATGATCTTCGTGGATTT-CCTGCCGGAATCTG-CCCTGGTTT 559 Query 531 CGGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTT 590 || |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 560 AGGCGCTGGTGGACATTTTAGCGGTGGCGGTTATGGAAACATGATGAGGAAATACGGTTT 619 Query 591 ATCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCG 650 |||||| ||||||||||||||||||||||| ||||| ||||| | ||||||||||||||| Sbjct 620 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTCTTGGACCG 679 Query 651 GAGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTG 710 ||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 680 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCCGCTAGTTTCTG 739 Query 711 TGTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGA-GAAAGTTACAGTCTTTA 769 ||||||||||||||||||||| ||||| ||||| || || || ||||| |||||||| | Sbjct 740 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTGCC-GACTAAAGTCACAGTCTTCA 798 Query 770 ACGTTGAAACAATCGGAAACAGAGG-A--GT-AATCCCT-ACCGATCTTGCAGCGAAATG 824 |||||||||| | ||||||||||| | || || | | || || |||| | | ||||| Sbjct 799 ACGTTGAAACGGTTGGAAACAGAGGAAGTGTGAA--CATCACGGAACTTGTAACCAAATG 856 Query 825 GCAAGAGATCGCCGACAAGATCGATAACGATTTGTTCATAAGATTAACGTTGA-GCTCAA 883 |||||||||||| ||||||||||| |||||| |||||||||||||||| || | |||||| Sbjct 857 GCAAGAGATCGCAGACAAGATCGACAACGATCTGTTCATAAGATTAAC-TTTAGGCTCAA 915 Query 884 GTAACAAGACGGTCAAGGCTTCTTTCATGGGAATGTACTTAGGAAACTCCGAGAAGCTTC 943 | ||||| || || |||||||||||||||||||||||| | |||||||| |||||||| Sbjct 916 GCAACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAAGCTTC 975 Query 944 TAGAGATTATGAACGCCAAATTCCCGGAACTCGGTCTGAACAAAACAGAGTGCATAGAAA 1003 |||| || |||||||| |||||||| || || |||||||||||||||||||| ||||||| Sbjct 976 TAGAAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGAACAAAACAGAGTGTATAGAAA 1035 Query 1004 TGAAATGGATCGAATCAGTTCTGTTCTGGCTTAGTATCCCACCGGGTACAGCACCAACAT 1063 |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| Sbjct 1036 TGAAATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCAGGTACAGCACCAACAA 1095 Query 1064 CG-GTCATGCTAAACCGAATCCCACAAAAGCAAATCTACCTTAAAAGAAAATCCGATTAC 1122 || || ||||||||||| ||||| ||||||||||||||||| || ||||||||||||||| Sbjct 1096 CGAGT-ATGCTAAACCGGATCCCGCAAAAGCAAATCTACCTCAAGAGAAAATCCGATTAC 1154 Query 1123 GTGCAGAAACCGATCTCAA-AACCCGGTCTAGAATCGATATTCAAGATTCTTTCAGAGAA 1181 || || |||||||| |||| || ||||| |||| |||||||||||| | || ||||||| Sbjct 1155 GTCCAAAAACCGATTTCAAGAA-CCGGTTTAGAGTCGATATTCAAGGTCCTGACAGAGAA 1213 Query 1182 CGAGAACGTGTCGATGGCTTGGAACCCATACGGCGGGAGAATGAGCGAGATTCCGGCGAC 1241 |||||||||| | ||||||| ||||| ||||| ||||| |||||||||||||| |||| Sbjct 1214 CGAGAACGTGACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGCGAGATTCCATCGAC 1273 Query 1242 AGAGACGGCGTTT-CCTCACCGAGCAGGGAACATGTTTAAGATTCAGTACTCATCTAACT 1300 ||||| || ||| || ||||||||||| |||||||| |||||||||||| || | |||| Sbjct 1274 CGAGACCGC-TTTCCCGCACCGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACT 1332 Query 1301 GGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGCCAAACGGAAAGAGTGTTCG 1360 ||||||||||||| |||| || ||||| |||||||||||||| |||||||||||||||| Sbjct 1333 GGTTCGTGCCAGGGGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACGGAAAGAGTGTTCG 1392 Query 1361 AGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCGTTTTTGAACTACAGAGATA 1420 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1393 AGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAAGCGTTTTTGAACTATAGAGACG 1452 Query 1421 TTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGTAAAGTGTATGGAGTTAAGT 1480 | |||||||| |||| |||||| || ||||||||||||||||||||||| |||||||| | Sbjct 1453 TCGACATTGGCAAGAGCTTGAATTCGACGTACGAGGAAGGTAAAGTGTACGGAGTTAAAT 1512 Query 1481 ATTTTAAGAATAACTTCGAGAGGTTGGTTCAGGTTAAGA-CTAGAGTTGATCCGGACAAC 1539 |||||||| |||||||||||| |||||| | | |||| | ||||||||||| |||||| Sbjct 1513 ATTTTAAGGATAACTTCGAGAAATTGGTTAATATCAAGAGC-AGAGTTGATCCCGACAAC 1571 Query 1540 ATTTTCCGGTACGAGCAGAGCATTCCAGTGC 1570 |||||||||||||||||||||||||||||| Sbjct 1572 TTTTTCCGGTACGAGCAGAGCATTCCAGTGC 1602 > Ahg473604 jgi|Araly1|473604|fgenesh2_kg.1__3558__AT1G34575.1 Length=1104 Score = 1085 bits (587), Expect = 0.0 Identities = 714/775 (92%), Gaps = 9/775 (1%) Strand=Plus/Plus Query 1 ATGAAATCTTCAACAACTCAAACCCTAATCTTCACAGTTTTTCTCCTTCTAATTCCAACA 60 |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 1 ATGAAATCTTCAACAACTCAAACCATAATCGTCACATTTTTTCTCCTTATAATTCCAACA 60 Query 61 TCATTCGCAGCACCACCAAAACTCAAAGACAGTTTCACACAATGTGTAACCGTTTTCAAA 120 |||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||| Sbjct 61 TCATTCGCAGCACCACCAAAACTCGAAGACAGTTTCACACAATGTCTCACCACTTTCAAA 120 Query 121 CCTT-----CC---G-TCCCAATCCAAAACTTCACATACACGCAACAAAACCCTAACTTC 171 |||| || | ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 CCTTCCGACCCAAAGTTCCCAATCCAAAACTTCACATACACGCAAGAAAACCCTAACTTC 180 Query 172 CTCACCATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAA 231 |||| ||||||||||||||||||||| || ||||||||||||||||||| |||||||||| Sbjct 181 CTCATCATTCTCAACAACTACGTCCGTAACCTCCGTTACTTCAACGGTATTACACGTAAA 240 Query 232 CCGGTAGCGATCGTAGCCGCGGCTCACTTCACTCATATCCAAGCTACAATCAACTGCGCC 291 ||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 CCGGTGGCGATCGTGGCTGCGGCTCACTTCACTCATATCCAAGCTACAATAAACTGCGCC 300 Query 292 AAAAAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCT 351 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 301 AAAAAACTTGGCCTCCAGCTTCGAATCCGTAGTGGAGGACACGACTACGATGGAATGTCT 360 Query 352 TATTTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTACGTGCAATTGAGATC 411 |||||||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 361 TATTTATCCACCGTCGATTTCGTCGTCCTCGACATGTTTAATCTACGTTCAATCGAGATT 420 Query 412 GATCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC 471 ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 421 GATCCTAAACTGGATACCGCGTGTGTCCAATCGGGTGCCACCCTAGGAGAGATCTACTAC 480 Query 472 AACGTTGCCAATAAAAGCAACAACCTCCGTGGTTTCCCCGCTGGAATCTGTCCCGGTCTC 531 ||||||||||| ||||||||||||||||| || ||||| || |||||||| ||||||||| Sbjct 481 AACGTTGCCAACAAAAGCAACAACCTCCGAGGGTTCCCTGCAGGAATCTGCCCCGGTCTC 540 Query 532 GGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 591 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GGTGCTCGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTA 600 Query 592 TCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCGG 651 || |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 601 TCTATTGATAACAATATAGACGCTAAGACTGTTGATGCTAACGCAAGAGTATTGGACCGG 660 Query 652 AGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTGT 711 || || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 661 AGCTCAATGGGAGAAGATCTTTTCTGGGCCATACGAGGCGGTGGAGCCGCTAGTTTCTGT 720 Query 712 GTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGAGAAAGTTACAGTCT 766 ||||||||||| ||||||||||| || ||||| || ||||||||||||||||||| Sbjct 721 GTTGTCTTAGCCTGGAAGATCAAACTTGTTCCGGTGCCGGAGAAAGTTACAGTCT 775 Score = 300 bits (162), Expect = 2e-80 Identities = 176/183 (96%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1282 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 ATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGC 906 Query 1342 CAAACGGAAAGAGTGTTCGAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 1401 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 907 CAGACGGAAAGAGTGTTCAAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCG 966 Query 1402 TTTTTGAACTACAGAGATATTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGT 1461 ||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 967 TTTTTGAACTATAGAGACGTTGACATTGGGAAGAACTTGAATTCGACGTACGAGGAAGGT 1026 Query 1462 AAA 1464 ||| Sbjct 1027 AAA 1029 Score = 113 bits (61), Expect = 3e-24 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1503 GTTGGTTCAGGTTAAGACTAGAGTTGATCCGGACAACATTTTCCGGTACGAGCAGAGCAT 1562 ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct 1031 GTTGGTTCAGGTTAAGACTAGAGTTAATCCCGACAACTTTTTCCGGTACGAGCAGAGCAT 1090 Query 1563 TCCAGTGCAC 1572 |||||||||| Sbjct 1091 TCCAGTGCAC 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5