BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34580.1 Length=1918 Score E Sequences producing significant alignments: (Bits) Value Ahg473605 jgi|Araly1|473605|fgenesh2_kg.1__3559__AT1G34580.1 2418 0.0 > Ahg473605 jgi|Araly1|473605|fgenesh2_kg.1__3559__AT1G34580.1 Length=1638 Score = 2418 bits (1309), Expect = 0.0 Identities = 1541/1652 (93%), Gaps = 19/1652 (1%) Strand=Plus/Plus Query 1 AATGTATTCTCTTTGTTCATTTGGTTTTACAACCaaaaaaaaacaaaaaaaaaaCACTTC 60 |||||||| ||||||||||||||||||| || | ||||||| || |||| ||| Sbjct 1 AATGTATTATCTTTGTTCATTTGGTTTT---ACGATTAAAAAAC-----AACAACAATTC 52 Query 61 ATGCGTAAGACATAAGCAAAATGGCCGGT-GGAGGATTGGCTCTTGATGTCTCCAGCGCC 119 || |||||||||||||||||||| | | |||||||||||||||||||||||| ||||| Sbjct 53 ATTTGTAAGACATAAGCAAAATGG-CTATCGGAGGATTGGCTCTTGATGTCTCCGGCGCC 111 Query 120 GGAAACATTGATGCCAAGATCACAGCCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 179 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 112 GGAAACATAGATGCCAAGATCACAACCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 171 Query 180 TGTGGTCTCATTTTTGGCTATGACATCGGAATCTCAGGGGGTGTGACGACTATGAAGCCG 239 |||||||||||||||||||| || |||||||| |||||||||||||| || ||||||||| Sbjct 172 TGTGGTCTCATTTTTGGCTACGATATCGGAATATCAGGGGGTGTGACAACAATGAAGCCG 231 Query 240 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTC 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTG 291 Query 300 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 351 Query 360 TTAGTAGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGAACCACCATG 419 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 352 TTAGTCGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGCACCACCATG 411 Query 420 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCTCTGATCAATGGCTTAGCTGCTAACATC 479 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 412 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCCCTGATCAATGGCTTAGCTGCCAACATC 471 Query 480 GCCATGCTCATCTCCGGTCGGATTTTGCTAGGATTTGGTGTCGGTTTCACCAACCAGGCG 539 |||||||| |||||||||||||||||| ||||||||||||| || ||||| |||||||| Sbjct 472 GCCATGCTTATCTCCGGTCGGATTTTGTTAGGATTTGGTGTTGGCTTCACAAACCAGGCA 531 Query 540 GCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATC-GG 598 |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || || Sbjct 532 GCTCCGGTGTATTTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTTAAC-TCCGG 590 Query 599 CTTTTCA-TGCTTCATCAGTATGGGAGTAGTAGCAGCCAATCTAATAAATTACGGTACCG 657 |||| || | ||||||| || | |||||||||||||||||||||||||| |||||||| | Sbjct 591 CTTT-CAATTCTTCATCGGTGTCGGAGTAGTAGCAGCCAATCTAATAAACTACGGTACGG 649 Query 658 ATAGTCACCGTAACGGCTGGCGTATCTCGCTAGGTCTAGCTGCTGTACCAGCCGCGATCA 717 | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 650 ACAGCCACCGTAACGGCTGGCGTATCTCTTTAGGTCTAGCTGCTGTACCAGCCGCGATCA 709 Query 718 TGACCGTGGGATGTCTATTCATTTCCGACACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 777 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 710 TGACCGTGGGATGTCTATTCATTTCCGATACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 769 Query 778 ACGATGAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 837 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 ACGATCAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 829 Query 838 AAACCGAGCTAGCAGAGTTGGT-TAGGTCAAGCCAGCTAGCCATTGAGGCTAGAGCCGAA 896 ||| ||||||||||||||| | ||| |||||||| |||||||||||||||||||||||| Sbjct 830 AAATTGAGCTAGCAGAGTTG-TCTAGATCAAGCCAACTAGCCATTGAGGCTAGAGCCGAA 888 Query 897 CTGTTTATGAAGACGATATTGCAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGTG 956 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 889 CCGTTTATGAAGACGATATTGGAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGCG 948 Query 957 ATACCATGTTTTCAACAGTTAACTGGAATAACGGTGAACGCGTTCTATGCGCCGGTTCTG 1016 ||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||| Sbjct 949 ATACCATGTTTTCAACAGTTAACCGGGATCACGGTTAATGCGTTCTATGCGCCGGTTCTG 1008 Query 1017 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTCATACTCGGGTTT 1076 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1009 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTGATACTCGGGTTG 1068 Query 1077 GTTAATCTTGGTTCGCTTCTTCTCTCAACAATGGTTATTGACCGGTTTGGTAGACGGTTT 1136 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1069 GTTAATCTTGGTTCGCTTCTTGTCTCAACCATGGTTATTGACCGGTTTGGTAGACGGTTT 1128 Query 1137 TTGTTCATTGCTGGCGGTATTCTGATGCTTCTCTGTCAGATTGCAGTGGCTGTGTTACTA 1196 |||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||| Sbjct 1129 TTGTTCATTGCTGGTGGTATTCAGATGTTTCTCTGCCAGATTGCAGTGGCTGTGTTACTA 1188 Query 1197 GCTGTGACAGTGGGAGCCACCGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1256 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1189 GCAGTGACAGTGGGAGCCAACGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1248 Query 1257 GTGGTGTTACTTTGCATATACGCAGCTGGGTTTGGATGGTCGTGGGGGCCATTAAGCTGG 1316 ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| Sbjct 1249 GTGGTGTTACTTTGCATATACTCGGCTGGGTTTGGATGGTCGTGGGGGCCATTGAGCTGG 1308 Query 1317 CTTGTCCCAAGTGAGATATTCCCACTCAAGATACGACCAGCTGGTCAGAGCTTAAGCGTT 1376 |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 1309 CTTGTCCCGAGTGAGATATTCCCACTCAAGATGCGACCGGCTGGTCAAAGCTTAAGCGTC 1368 Query 1377 GCCGTGAACTTCGCCGCAACGTTTGCTCTCTCTCAAACGTTCTTAGCAACGCTCTGCGAT 1436 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1369 GCCGTGAACTTCGCCGCAACGTTCGCTCTCTCTCAGACGTTCTTAGCAACGCTCTGCGAT 1428 Query 1437 TTCAAGTACGGTGCTTTCTTGTTTTACGGCGGTTGGATCTTTACAATGACGATATTCGTC 1496 |||||||||||||| ||||||||||| |||||||||||||||| |||||| | |||||| Sbjct 1429 TTCAAGTACGGTGCGTTCTTGTTTTATGGCGGTTGGATCTTTAGTATGACGGTGTTCGTC 1488 Query 1497 ATCATGTTCTTGCCCGAGACCAAAGGGATACCTGTGGATTCTATGTATCAAGTTTGGGAG 1556 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1489 ATCATGTTCTTGCCGGAGACCAAAGGGATCCCTGTGGATTCTATGTATCAAGTTTGGGAG 1548 Query 1557 AAGCATTGGTATTGGCAACGGTTTACTAAACCGACGTCAACT-TAAAAGATGCAATATTG 1615 ||||||||||||||||||||||| ||||||| |||||||| | | |||||| |||||||| Sbjct 1549 AAGCATTGGTATTGGCAACGGTTCACTAAACGGACGTCAA-TATGAAAGATACAATATTG 1607 Query 1616 CAATGGGTTCGCATTTTCAATGGATTATGTTT 1647 | |||| || ||||||| ||||||||||||| Sbjct 1608 CTATGGTTTA-CATTTTCCATGGATTATGTTT 1638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72066743540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5