BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G34580.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473605 jgi|Araly1|473605|fgenesh2_kg.1__3559__AT1G34580.1 2418 0.0
> Ahg473605 jgi|Araly1|473605|fgenesh2_kg.1__3559__AT1G34580.1
Length=1638
Score = 2418 bits (1309), Expect = 0.0
Identities = 1541/1652 (93%), Gaps = 19/1652 (1%)
Strand=Plus/Plus
Query 1 AATGTATTCTCTTTGTTCATTTGGTTTTACAACCaaaaaaaaacaaaaaaaaaaCACTTC 60
|||||||| ||||||||||||||||||| || | ||||||| || |||| |||
Sbjct 1 AATGTATTATCTTTGTTCATTTGGTTTT---ACGATTAAAAAAC-----AACAACAATTC 52
Query 61 ATGCGTAAGACATAAGCAAAATGGCCGGT-GGAGGATTGGCTCTTGATGTCTCCAGCGCC 119
|| |||||||||||||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 53 ATTTGTAAGACATAAGCAAAATGG-CTATCGGAGGATTGGCTCTTGATGTCTCCGGCGCC 111
Query 120 GGAAACATTGATGCCAAGATCACAGCCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 179
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 GGAAACATAGATGCCAAGATCACAACCGCAGTTGTCATGAGTTGCATTGTGGCTGCCTCA 171
Query 180 TGTGGTCTCATTTTTGGCTATGACATCGGAATCTCAGGGGGTGTGACGACTATGAAGCCG 239
|||||||||||||||||||| || |||||||| |||||||||||||| || |||||||||
Sbjct 172 TGTGGTCTCATTTTTGGCTACGATATCGGAATATCAGGGGGTGTGACAACAATGAAGCCG 231
Query 240 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTG 291
Query 300 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TACTGCGTCTACGACAGCCAACTTCTTACGGCCTTCACATCTAGCCTTTATGTTGCCGGC 351
Query 360 TTAGTAGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGAACCACCATG 419
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 TTAGTCGCTTCCTTAGTGGCTAGCCGTCTCACAGCGGCTTATGGTCGCCGCACCACCATG 411
Query 420 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCTCTGATCAATGGCTTAGCTGCTAACATC 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 412 ATCCTTGGCGGTTTCACTTTCCTCTTTGGTGCCCTGATCAATGGCTTAGCTGCCAACATC 471
Query 480 GCCATGCTCATCTCCGGTCGGATTTTGCTAGGATTTGGTGTCGGTTTCACCAACCAGGCG 539
|||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||
Sbjct 472 GCCATGCTTATCTCCGGTCGGATTTTGTTAGGATTTGGTGTTGGCTTCACAAACCAGGCA 531
Query 540 GCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATC-GG 598
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 532 GCTCCGGTGTATTTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTTAAC-TCCGG 590
Query 599 CTTTTCA-TGCTTCATCAGTATGGGAGTAGTAGCAGCCAATCTAATAAATTACGGTACCG 657
|||| || | ||||||| || | |||||||||||||||||||||||||| |||||||| |
Sbjct 591 CTTT-CAATTCTTCATCGGTGTCGGAGTAGTAGCAGCCAATCTAATAAACTACGGTACGG 649
Query 658 ATAGTCACCGTAACGGCTGGCGTATCTCGCTAGGTCTAGCTGCTGTACCAGCCGCGATCA 717
| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 650 ACAGCCACCGTAACGGCTGGCGTATCTCTTTAGGTCTAGCTGCTGTACCAGCCGCGATCA 709
Query 718 TGACCGTGGGATGTCTATTCATTTCCGACACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 TGACCGTGGGATGTCTATTCATTTCCGATACACCTTCTAGCCTCTTGGCGCGTGGGAAAC 769
Query 778 ACGATGAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 837
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ACGATCAAGCTCACACGTCGCTGCTTAAGCTACGTGGCGTCGAAAACATAGCTGACGTGG 829
Query 838 AAACCGAGCTAGCAGAGTTGGT-TAGGTCAAGCCAGCTAGCCATTGAGGCTAGAGCCGAA 896
||| ||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||
Sbjct 830 AAATTGAGCTAGCAGAGTTG-TCTAGATCAAGCCAACTAGCCATTGAGGCTAGAGCCGAA 888
Query 897 CTGTTTATGAAGACGATATTGCAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGTG 956
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 889 CCGTTTATGAAGACGATATTGGAGAGACGGTATAGGCCTCATCTTGTGGTTGCTGTGGCG 948
Query 957 ATACCATGTTTTCAACAGTTAACTGGAATAACGGTGAACGCGTTCTATGCGCCGGTTCTG 1016
||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||
Sbjct 949 ATACCATGTTTTCAACAGTTAACCGGGATCACGGTTAATGCGTTCTATGCGCCGGTTCTG 1008
Query 1017 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTCATACTCGGGTTT 1076
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1009 TTTCGATCGGTTGGGTTTGGTTCTGGTCCGGCTCTTATTGCGACGTTGATACTCGGGTTG 1068
Query 1077 GTTAATCTTGGTTCGCTTCTTCTCTCAACAATGGTTATTGACCGGTTTGGTAGACGGTTT 1136
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1069 GTTAATCTTGGTTCGCTTCTTGTCTCAACCATGGTTATTGACCGGTTTGGTAGACGGTTT 1128
Query 1137 TTGTTCATTGCTGGCGGTATTCTGATGCTTCTCTGTCAGATTGCAGTGGCTGTGTTACTA 1196
|||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1129 TTGTTCATTGCTGGTGGTATTCAGATGTTTCTCTGCCAGATTGCAGTGGCTGTGTTACTA 1188
Query 1197 GCTGTGACAGTGGGAGCCACCGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1256
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GCAGTGACAGTGGGAGCCAACGGGGACGGAGAGATGAAGAAGGGTTACGCCGTGACGGTG 1248
Query 1257 GTGGTGTTACTTTGCATATACGCAGCTGGGTTTGGATGGTCGTGGGGGCCATTAAGCTGG 1316
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1249 GTGGTGTTACTTTGCATATACTCGGCTGGGTTTGGATGGTCGTGGGGGCCATTGAGCTGG 1308
Query 1317 CTTGTCCCAAGTGAGATATTCCCACTCAAGATACGACCAGCTGGTCAGAGCTTAAGCGTT 1376
|||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1309 CTTGTCCCGAGTGAGATATTCCCACTCAAGATGCGACCGGCTGGTCAAAGCTTAAGCGTC 1368
Query 1377 GCCGTGAACTTCGCCGCAACGTTTGCTCTCTCTCAAACGTTCTTAGCAACGCTCTGCGAT 1436
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1369 GCCGTGAACTTCGCCGCAACGTTCGCTCTCTCTCAGACGTTCTTAGCAACGCTCTGCGAT 1428
Query 1437 TTCAAGTACGGTGCTTTCTTGTTTTACGGCGGTTGGATCTTTACAATGACGATATTCGTC 1496
|||||||||||||| ||||||||||| |||||||||||||||| |||||| | ||||||
Sbjct 1429 TTCAAGTACGGTGCGTTCTTGTTTTATGGCGGTTGGATCTTTAGTATGACGGTGTTCGTC 1488
Query 1497 ATCATGTTCTTGCCCGAGACCAAAGGGATACCTGTGGATTCTATGTATCAAGTTTGGGAG 1556
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1489 ATCATGTTCTTGCCGGAGACCAAAGGGATCCCTGTGGATTCTATGTATCAAGTTTGGGAG 1548
Query 1557 AAGCATTGGTATTGGCAACGGTTTACTAAACCGACGTCAACT-TAAAAGATGCAATATTG 1615
||||||||||||||||||||||| ||||||| |||||||| | | |||||| ||||||||
Sbjct 1549 AAGCATTGGTATTGGCAACGGTTCACTAAACGGACGTCAA-TATGAAAGATACAATATTG 1607
Query 1616 CAATGGGTTCGCATTTTCAATGGATTATGTTT 1647
| |||| || ||||||| |||||||||||||
Sbjct 1608 CTATGGTTTA-CATTTTCCATGGATTATGTTT 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5