BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G34640.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473606 jgi|Araly1|473606|fgenesh2_kg.1__3560__AT1G34640.1         723    0.0  


> Ahg473606 jgi|Araly1|473606|fgenesh2_kg.1__3560__AT1G34640.1
Length=555

 Score =  723 bits (391),  Expect = 0.0
 Identities = 433/453 (96%), Gaps = 4/453 (1%)
 Strand=Plus/Plus

Query  15   TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTT-ATAAAGCAACTTCAACT  73
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  2    TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTTAAAAAAGCAACTTCAACT  61

Query  74   AATCCCGTTTTAAATATAAGCTATCTACTCTCTCTTAGCCAT-AATGGGAAACGAAGCAG  132
            |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  62   AATCCCGTTTTAAATACAAGTTATCTACTCTCTCTTAGCCATAAATGGGAAACGAAGCAG  121

Query  133  CACTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGTAGTTG-TATGGTTATGGACA  191
            || ||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct  122  CATTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGT-GGTGATATGGTTATGGACA  180

Query  192  CAGTCTTTAAAGAAGACGGTTGTTACTTACGCCGTCGGTATTTCTCTTATTGGCGGCATA  251
            ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct  181  CAGTCTTTAAAGAAGACTGTTGTTACTTACGCCGTCGGTATTTCGCTTATCGGTGGCATA  240

Query  252  CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGCTATCCTGTCACC  311
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGATATCCTGTCACC  300

Query  312  GCCGAGGAAAGATCAGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC  371
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCCGAGGAAAGAGCCGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC  360

Query  372  CCTATGAGGATGGTTTTATACGGCACGGTCTATGGATATGCAGTGTATAGGTGGTGGATG  431
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  361  CCTATGAGGATGGTTTTATACGGTACGGTGTATGGATATGCAGTGTATAGGTGGTGGATG  420

Query  432  TTCGTATCAAATTATTGAAGCCATATTGTATTT  464
            ||||| ||||||| |||||||||||||||||||
Sbjct  421  TTCGTGTCAAATTTTTGAAGCCATATTGTATTT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5