BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G34640.1 Length=603 Score E Sequences producing significant alignments: (Bits) Value Ahg473606 jgi|Araly1|473606|fgenesh2_kg.1__3560__AT1G34640.1 723 0.0 > Ahg473606 jgi|Araly1|473606|fgenesh2_kg.1__3560__AT1G34640.1 Length=555 Score = 723 bits (391), Expect = 0.0 Identities = 433/453 (96%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 15 TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTT-ATAAAGCAACTTCAACT 73 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 2 TCCTACATAATCTGTGAATCTTCTTTCCATGTTTACACTGTTAAAAAAGCAACTTCAACT 61 Query 74 AATCCCGTTTTAAATATAAGCTATCTACTCTCTCTTAGCCAT-AATGGGAAACGAAGCAG 132 |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 62 AATCCCGTTTTAAATACAAGTTATCTACTCTCTCTTAGCCATAAATGGGAAACGAAGCAG 121 Query 133 CACTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGTAGTTG-TATGGTTATGGACA 191 || ||||||||||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct 122 CATTAAGATCATCAATGGTAGGTCTTGCAGTGGTGATGGT-GGTGATATGGTTATGGACA 180 Query 192 CAGTCTTTAAAGAAGACGGTTGTTACTTACGCCGTCGGTATTTCTCTTATTGGCGGCATA 251 ||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||| Sbjct 181 CAGTCTTTAAAGAAGACTGTTGTTACTTACGCCGTCGGTATTTCGCTTATCGGTGGCATA 240 Query 252 CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGCTATCCTGTCACC 311 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 CTTTTGCCGGATTGGGACTTCTTTGATCGGAGTTTCTCTCGGTGGGGATATCCTGTCACC 300 Query 312 GCCGAGGAAAGATCAGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC 371 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCCGAGGAAAGAGCCGCCGCTCTCGCCCGCAAATCTCATCCTTCAAGGTTTAGAGTGTAC 360 Query 372 CCTATGAGGATGGTTTTATACGGCACGGTCTATGGATATGCAGTGTATAGGTGGTGGATG 431 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 361 CCTATGAGGATGGTTTTATACGGTACGGTGTATGGATATGCAGTGTATAGGTGGTGGATG 420 Query 432 TTCGTATCAAATTATTGAAGCCATATTGTATTT 464 ||||| ||||||| ||||||||||||||||||| Sbjct 421 TTCGTGTCAAATTTTTGAAGCCATATTGTATTT 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22092086031 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5